Guide to the Human Genome
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Name: PADI1 Sequence: fasta or formatted (663aa) NCBI GI: 122056685
Description:

peptidylarginine deiminase type I

Referenced in:

Additional Protein Modifications

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5         30           2
 C cysteine            2.1         14           2
 D aspartate           6.6         44           2
 E glutamate           6.0         40           2
 F phenylalanine       5.1         34           2
 G glycine             7.5         50           2
 H histidine           2.3         15           1
 I isoleucine          3.5         23           2
 K lysine              5.9         39           2
 L leucine            10.3         68           3
 M methionine          2.6         17           1
 N asparagine          3.6         24           1
 P proline             6.6         44           2
 Q glutamine           3.8         25           2
 R arginine            5.6         37           2
 S serine              6.9         46           2
 T threonine           3.8         25           1
 V valine              8.7         58           2
 W tryptophan          1.5         10           2
 Y tyrosine            3.0         20           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   peptidylarginine deiminase type I 
PADI4                 0.550   peptidyl arginine deiminase, type IV 
PADI3                 0.544   peptidyl arginine deiminase, type III 
PADI2                 0.482   peptidyl arginine deiminase, type II 
PADI6                 0.397   peptidylarginine deiminase type 6 
RABL5                 0.005   RAB, member RAS oncogene family-like 5 isoform c [H...
RABL5                 0.005   RAB, member RAS oncogene family-like 5 isoform c [H...
RABL5                 0.005   RAB, member RAS oncogene family-like 5 isoform b [H...
RABL5                 0.005   RAB, member RAS oncogene family-like 5 isoform a [Ho...
CELSR3                0.004   cadherin EGF LAG seven-pass G-type receptor 3 [Homo...
SEZ6L2                0.004   seizure related 6 homolog (mouse)-like 2 isoform 4 ...
SEZ6L2                0.004   seizure related 6 homolog (mouse)-like 2 isoform 3 ...
SEZ6L2                0.004   seizure related 6 homolog (mouse)-like 2 isoform 2 ...
SEZ6L2                0.004   seizure related 6 homolog (mouse)-like 2 isoform 1 [H...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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