Guide to the Human Genome
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Name: OR13C8 Sequence: fasta or formatted (320aa) NCBI GI: 52218864
Description:

olfactory receptor, family 13, subfamily C, member 8

Referenced in:

Olfactory Receptors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         25           2
 C cysteine            3.1         10           1
 D aspartate           3.1         10           1
 E glutamate           2.5          8           1
 F phenylalanine       6.9         22           2
 G glycine             4.7         15           1
 H histidine           1.9          6           1
 I isoleucine         10.0         32           2
 K lysine              5.0         16           3
 L leucine            11.2         36           2
 M methionine          5.0         16           1
 N asparagine          3.8         12           2
 P proline             3.4         11           1
 Q glutamine           1.2          4           1
 R arginine            1.9          6           1
 S serine              9.4         30           3
 T threonine           5.3         17           1
 V valine              9.4         30           2
 W tryptophan          0.6          2           1
 Y tyrosine            3.8         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   olfactory receptor, family 13, subfamily C, member 8... 
OR2S2                 0.661   olfactory receptor, family 2, subfamily S, member 2...
OR13C3                0.657   olfactory receptor, family 13, subfamily C, member 3...
OR13C4                0.647   olfactory receptor, family 13, subfamily C, member 4...
OR13C2                0.642   olfactory receptor, family 13, subfamily C, member 2...
OR13C9                0.642   olfactory receptor, family 13, subfamily C, member 9...
OR13C5                0.624   olfactory receptor, family 13, subfamily C, member 5...
OR13D1                0.571   olfactory receptor, family 13, subfamily D, member 1...
OR2K2                 0.510   olfactory receptor, family 2, subfamily K, member 2 ...
OR13F1                0.500   olfactory receptor, family 13, subfamily F, member 1...
OR2G3                 0.485   olfactory receptor, family 2, subfamily G, member 3 ...
OR2G6                 0.464   olfactory receptor, family 2, subfamily G, member 6 ...
OR13J1                0.459   olfactory receptor, family 13, subfamily J, member 1...
OR2C3                 0.457   olfactory receptor, family 2, subfamily C, member 3...
OR2F1                 0.444   olfactory receptor, family 2, subfamily F, member 1 ...
OR5V1                 0.442   olfactory receptor, family 5, subfamily V, member 1 ...
OR2B2                 0.440   olfactory receptor, family 2, subfamily B, member 2 ...
OR2B6                 0.432   olfactory receptor, family 2, subfamily B, member 6 ...
OR2B3                 0.430   olfactory receptor, family 2, subfamily B, member 3 ...
OR2F2                 0.427   olfactory receptor, family 2, subfamily F, member 2 ...
OR2H2                 0.427   olfactory receptor, family 2, subfamily H, member 2 ...
OR2J3                 0.424   olfactory receptor, family 2, subfamily J, member 3...
OR2D2                 0.424   olfactory receptor, family 2, subfamily D, member 2 ...
OR2C1                 0.422   olfactory receptor, family 2, subfamily C, member 1...
OR2G2                 0.422   olfactory receptor, family 2, subfamily G, member 2 ...
OR2D3                 0.422   olfactory receptor, family 2, subfamily D, member 3 ...
OR5AR1                0.421   olfactory receptor, family 5, subfamily AR, member 1...
OR1L4                 0.421   olfactory receptor, family 1, subfamily L, member 4 ...
OR2J2                 0.419   olfactory receptor, family 2, subfamily J, member 2...
OR10Q1                0.419   olfactory receptor, family 10, subfamily Q, member 1...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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