Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100131509 Sequence: fasta or formatted (534aa) NCBI GI: 239757991
Description:

PREDICTED: similar to inward rectifying K+ channel negative regulator Kir2.2v isoform 2

Not currently referenced in the text

Other entries for this name:
alt prot {432aa} PREDICTED: similar to inward rectifying K+ channel negative regul...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         45           2
 C cysteine            2.8         15           1
 D aspartate           4.5         24           2
 E glutamate           6.0         32           2
 F phenylalanine       5.2         28           1
 G glycine             6.7         36           3
 H histidine           3.2         17           1
 I isoleucine          5.8         31           2
 K lysine              4.3         23           2
 L leucine             8.6         46           2
 M methionine          2.6         14           1
 N asparagine          3.0         16           1
 P proline             6.2         33           2
 Q glutamine           4.7         25           1
 R arginine            7.1         38           3
 S serine              7.1         38           2
 T threonine           3.7         20           2
 V valine              6.4         34           2
 W tryptophan          1.5          8           1
 Y tyrosine            2.1         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to inward rectifying K+ channel ... 
LOC100131509          0.796   PREDICTED: similar to inward rectifying K+ channel ...
LOC100290070          0.796   PREDICTED: hypothetical protein XP_002347768 
KCNJ12                0.757   potassium inwardly-rectifying channel, subfamily J, ...
LOC100134444          0.743   PREDICTED: similar to thyrotoxic periodic paralysis...
KCNJ2                 0.532   potassium inwardly-rectifying channel J2 
KCNJ4                 0.467   potassium inwardly-rectifying channel J4 
KCNJ4                 0.467   potassium inwardly-rectifying channel J4 
KCNJ14                0.410   potassium inwardly-rectifying channel J14 
KCNJ14                0.410   potassium inwardly-rectifying channel J14 
KCNJ9                 0.331   potassium inwardly-rectifying channel subfamily J9 [...
KCNJ5                 0.324   potassium inwardly-rectifying channel J5 
KCNJ6                 0.319   potassium inwardly-rectifying channel J6 
KCNJ3                 0.308   potassium inwardly-rectifying channel J3 
KCNJ11                0.284   potassium inwardly-rectifying channel J11 
KCNJ8                 0.276   potassium inwardly-rectifying channel J8 
KCNJ1                 0.275   potassium inwardly-rectifying channel J1 isoform b [...
KCNJ1                 0.275   potassium inwardly-rectifying channel J1 isoform b [...
KCNJ1                 0.275   potassium inwardly-rectifying channel J1 isoform a [H...
KCNJ1                 0.275   potassium inwardly-rectifying channel J1 isoform b ...
KCNJ1                 0.275   potassium inwardly-rectifying channel J1 isoform b [...
KCNJ16                0.260   potassium inwardly-rectifying channel J16 
KCNJ16                0.260   potassium inwardly-rectifying channel J16 
KCNJ16                0.260   potassium inwardly-rectifying channel J16 
KCNJ15                0.231   potassium inwardly-rectifying channel J15 
KCNJ15                0.231   potassium inwardly-rectifying channel J15 
KCNJ15                0.231   potassium inwardly-rectifying channel J15 
KCNJ10                0.229   potassium inwardly-rectifying channel, subfamily J, ...
LOC100131960          0.151   PREDICTED: hypothetical protein 
KCNJ13                0.143   potassium inwardly-rectifying channel J13 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press