Guide to the Human Genome
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Name: LOC100290070 Sequence: fasta or formatted (432aa) NCBI GI: 239751249
Description:

PREDICTED: hypothetical protein XP_002347768

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         33           2
 C cysteine            2.3         10           1
 D aspartate           5.6         24           2
 E glutamate           6.7         29           2
 F phenylalanine       6.0         26           1
 G glycine             6.5         28           3
 H histidine           3.2         14           1
 I isoleucine          7.2         31           2
 K lysine              4.4         19           2
 L leucine             8.6         37           2
 M methionine          3.0         13           1
 N asparagine          3.7         16           1
 P proline             3.5         15           1
 Q glutamine           3.7         16           1
 R arginine            7.2         31           3
 S serine              6.0         26           2
 T threonine           3.9         17           2
 V valine              7.2         31           2
 W tryptophan          1.2          5           1
 Y tyrosine            2.5         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347768 
LOC100131509          1.000   PREDICTED: similar to inward rectifying K+ channel ...
LOC100131509          1.000   PREDICTED: similar to inward rectifying K+ channel ...
KCNJ12                0.951   potassium inwardly-rectifying channel, subfamily J, ...
LOC100134444          0.933   PREDICTED: similar to thyrotoxic periodic paralysis...
KCNJ2                 0.668   potassium inwardly-rectifying channel J2 
KCNJ4                 0.587   potassium inwardly-rectifying channel J4 
KCNJ4                 0.587   potassium inwardly-rectifying channel J4 
KCNJ14                0.515   potassium inwardly-rectifying channel J14 
KCNJ14                0.515   potassium inwardly-rectifying channel J14 
KCNJ9                 0.416   potassium inwardly-rectifying channel subfamily J9 [...
KCNJ5                 0.407   potassium inwardly-rectifying channel J5 
KCNJ6                 0.401   potassium inwardly-rectifying channel J6 
KCNJ3                 0.387   potassium inwardly-rectifying channel J3 
KCNJ11                0.356   potassium inwardly-rectifying channel J11 
KCNJ8                 0.347   potassium inwardly-rectifying channel J8 
KCNJ1                 0.346   potassium inwardly-rectifying channel J1 isoform b [...
KCNJ1                 0.346   potassium inwardly-rectifying channel J1 isoform b [...
KCNJ1                 0.346   potassium inwardly-rectifying channel J1 isoform a [H...
KCNJ1                 0.346   potassium inwardly-rectifying channel J1 isoform b ...
KCNJ1                 0.346   potassium inwardly-rectifying channel J1 isoform b [...
KCNJ16                0.327   potassium inwardly-rectifying channel J16 
KCNJ16                0.327   potassium inwardly-rectifying channel J16 
KCNJ16                0.327   potassium inwardly-rectifying channel J16 
KCNJ15                0.291   potassium inwardly-rectifying channel J15 
KCNJ15                0.291   potassium inwardly-rectifying channel J15 
KCNJ15                0.291   potassium inwardly-rectifying channel J15 
KCNJ10                0.288   potassium inwardly-rectifying channel, subfamily J, ...
KCNJ13                0.180   potassium inwardly-rectifying channel J13 
OR10T2                0.009   olfactory receptor, family 10, subfamily T, member 2...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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