Guide to the Human Genome
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Name: LOC390638 Sequence: fasta or formatted (306aa) NCBI GI: 239756399
Description:

PREDICTED: similar to hCG32587

Not currently referenced in the text

Other entries for this name:
alt prot {233aa} PREDICTED: similar to hCG32587
alt prot {233aa} PREDICTED: similar to hCG32587
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.2         28           2
 C cysteine            0.7          2           1
 D aspartate           3.9         12           2
 E glutamate          11.4         35           4
 F phenylalanine       0.3          1           1
 G glycine             6.5         20           2
 H histidine           4.2         13           2
 I isoleucine          1.0          3           1
 K lysine              4.9         15           1
 L leucine            10.5         32           3
 M methionine          2.9          9           1
 N asparagine          1.6          5           1
 P proline             4.6         14           2
 Q glutamine          12.7         39           3
 R arginine            5.6         17           2
 S serine              7.5         23           2
 T threonine           5.9         18           2
 V valine              4.6         14           1
 W tryptophan          0.7          2           1
 Y tyrosine            1.3          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG32587 
LOC390638             0.673   PREDICTED: similar to hCG32587 
LOC390638             0.673   PREDICTED: similar to hCG32587 
GOLGA2                0.346   Golgi autoantigen, golgin subfamily a, 2 
LOC100131061          0.287   PREDICTED: similar to golgi autoantigen, golgin sub...
LOC100131061          0.287   PREDICTED: similar to golgi autoantigen, golgin sub...
GOLGA8G               0.141   golgi autoantigen, golgin subfamily a, 8G 
LOC728080             0.138   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728047             0.138   PREDICTED: similar to Golgin subfamily A member 8-l...
GOLGA6D               0.136   golgi autoantigen, golgin subfamily a, 6D 
GOLGA6C               0.136   PREDICTED: golgi autoantigen, golgin subfamily a, 6C...
GOLGA6                0.136   golgi autoantigen, golgin subfamily a, 6 
LOC727909             0.134   PREDICTED: similar to Golgin subfamily A member 8-l...
GOLGA8E               0.134   golgi autoantigen, golgin subfamily a, 8E 
GOLGA6B               0.134   golgi autoantigen, golgin subfamily a, 6B 
LOC643699             0.134   PREDICTED: similar to golgi autoantigen, golgin sub...
LOC653125             0.129   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653073             0.129   PREDICTED: Golgin subfamily A member 8-like protein...
LOC653720             0.129   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC390561             0.127   PREDICTED: similar to hect domain and RLD 2 
LOC728498             0.127   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653061             0.127   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653061             0.120   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC100133220          0.119   PREDICTED: hypothetical protein 
LOC647042             0.112   PREDICTED: hypothetical protein isoform 1 
LOC728636             0.107   PREDICTED: similar to golgi autoantigen, golgin sub...
LOC440295             0.107   hypothetical protein LOC440295 
LOC647042             0.105   PREDICTED: hypothetical protein isoform 2 
LOC100289289          0.102   PREDICTED: hypothetical protein XP_002343409 
LOC653073             0.090   PREDICTED: Golgin subfamily A member 8-like protein...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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