Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC390638 Sequence: fasta or formatted (233aa) NCBI GI: 239745324
Description:

PREDICTED: similar to hCG32587

Not currently referenced in the text

Other entries for this name:
alt mRNA {233aa} PREDICTED: similar to hCG32587
alt prot {306aa} PREDICTED: similar to hCG32587
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.6         20           2
 C cysteine            0.4          1           1
 D aspartate           4.3         10           2
 E glutamate          10.3         24           2
 F phenylalanine       0.4          1           1
 G glycine             6.4         15           1
 H histidine           4.3         10           1
 I isoleucine          1.3          3           1
 K lysine              4.3         10           1
 L leucine            10.3         24           2
 M methionine          1.7          4           1
 N asparagine          1.7          4           1
 P proline             5.6         13           2
 Q glutamine           9.9         23           2
 R arginine            7.3         17           2
 S serine              8.6         20           2
 T threonine           6.0         14           2
 V valine              5.6         13           1
 W tryptophan          0.9          2           1
 Y tyrosine            2.1          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG32587 
LOC390638             1.000   PREDICTED: similar to hCG32587 
LOC390638             0.889   PREDICTED: similar to hCG32587 
GOLGA2                0.273   Golgi autoantigen, golgin subfamily a, 2 
LOC100289289          0.134   PREDICTED: hypothetical protein XP_002343409 
LOC647042             0.116   PREDICTED: hypothetical protein isoform 2 
LOC100133220          0.114   PREDICTED: hypothetical protein 
LOC647042             0.114   PREDICTED: hypothetical protein isoform 1 
LOC728636             0.114   PREDICTED: similar to golgi autoantigen, golgin sub...
LOC440295             0.114   hypothetical protein LOC440295 
LOC653061             0.102   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653061             0.102   PREDICTED: similar to Golgin subfamily A member 8-l...
GOLGA8E               0.100   golgi autoantigen, golgin subfamily a, 8E 
LOC653073             0.100   PREDICTED: Golgin subfamily A member 8-like protein...
GOLGA8G               0.100   golgi autoantigen, golgin subfamily a, 8G 
LOC653061             0.098   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC643699             0.095   PREDICTED: similar to golgi autoantigen, golgin sub...
LOC653073             0.095   PREDICTED: Golgin subfamily A member 8-like protein...
LOC653720             0.095   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653061             0.095   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728080             0.093   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728080             0.093   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728047             0.093   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728047             0.093   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC727909             0.093   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC727909             0.093   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC643699             0.093   PREDICTED: similar to golgi autoantigen, golgin sub...
LOC653073             0.093   PREDICTED: Golgin subfamily A member 8-like protein...
LOC653720             0.093   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC653125             0.091   PREDICTED: similar to Golgin subfamily A member 8-l...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press