Guide to the Human Genome
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Name: LOC100131061 Sequence: fasta or formatted (97aa) NCBI GI: 169208321
Description:

PREDICTED: similar to golgi autoantigen, golgin subfamily a, 2, partial

Referenced in:

ER, Golgi, and the Secretory Pathway

Other entries for this name:
alt mRNA [97aa] PREDICTED: similar to golgi autoantigen, golgin subfamily a, 2, p...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.3         10           2
 C cysteine            1.0          1           1
 D aspartate           2.1          2           1
 E glutamate          13.4         13           4
 F phenylalanine       0.0          0           0
 G glycine             7.2          7           2
 H histidine           4.1          4           2
 I isoleucine          0.0          0           0
 K lysine              4.1          4           1
 L leucine            12.4         12           3
 M methionine          4.1          4           1
 N asparagine          1.0          1           1
 P proline             2.1          2           1
 Q glutamine          21.6         21           3
 R arginine            3.1          3           1
 S serine              5.2          5           1
 T threonine           5.2          5           1
 V valine              2.1          2           1
 W tryptophan          0.0          0           0
 Y tyrosine            1.0          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to golgi autoantigen, golgin sub... 
LOC390638             1.000   PREDICTED: similar to hCG32587 
LOC100131061          1.000   PREDICTED: similar to golgi autoantigen, golgin sub...
GOLGA2                0.677   Golgi autoantigen, golgin subfamily a, 2 
LOC728477             0.263   PREDICTED: similar to hCG27445 
LOC728477             0.263   PREDICTED: similar to hCG27445 
GOLGA6B               0.198   golgi autoantigen, golgin subfamily a, 6B 
LOC653125             0.192   PREDICTED: similar to Golgin subfamily A member 8-l...
GOLGA6D               0.186   golgi autoantigen, golgin subfamily a, 6D 
GOLGA6C               0.186   PREDICTED: golgi autoantigen, golgin subfamily a, 6C...
LOC728080             0.186   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728047             0.186   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC390561             0.186   PREDICTED: similar to hect domain and RLD 2 
LOC653073             0.186   PREDICTED: Golgin subfamily A member 8-like protein...
LOC653061             0.186   PREDICTED: similar to Golgin subfamily A member 8-l...
GOLGA8E               0.186   golgi autoantigen, golgin subfamily a, 8E 
GOLGA6                0.186   golgi autoantigen, golgin subfamily a, 6 
LOC653720             0.180   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC727909             0.180   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC728498             0.180   PREDICTED: similar to Golgin subfamily A member 8-l...
LOC643699             0.180   PREDICTED: similar to golgi autoantigen, golgin sub...
LOC653073             0.174   PREDICTED: Golgin subfamily A member 8-like protein...
GOLGA8G               0.174   golgi autoantigen, golgin subfamily a, 8G 
LOC653061             0.162   PREDICTED: similar to Golgin subfamily A member 8-l...
ZNF853                0.114   zinc finger protein 853 
MYH11                 0.114   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.114   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.114   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.114   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
MED15                 0.108   mediator complex subunit 15 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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