Guide to the Human Genome
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Name: C15orf56 Sequence: fasta or formatted (161aa) NCBI GI: 90017700
Description:

hypothetical protein LOC644809

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.7         22           2
 C cysteine            3.1          5           1
 D aspartate           0.6          1           1
 E glutamate           3.7          6           2
 F phenylalanine       1.9          3           1
 G glycine            13.0         21           2
 H histidine           0.0          0           0
 I isoleucine          0.6          1           1
 K lysine              1.2          2           1
 L leucine             7.5         12           2
 M methionine          0.6          1           1
 N asparagine          1.2          2           1
 P proline            15.5         25           2
 Q glutamine           3.1          5           1
 R arginine           14.3         23           3
 S serine              6.8         11           2
 T threonine           5.0          8           1
 V valine              3.7          6           1
 W tryptophan          4.3          7           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC644809 
LOC100292541          0.074   PREDICTED: hypothetical protein 
CTDP1                 0.046   CTD (carboxy-terminal domain, RNA polymerase II, pol...
CTDP1                 0.046   CTD (carboxy-terminal domain, RNA polymerase II, pol...
LOC100130360          0.046   PREDICTED: hypothetical protein 
AKNA                  0.043   AT-hook transcription factor 
LOC100290265          0.037   PREDICTED: hypothetical protein XP_002346787 
LMTK3                 0.034   lemur tyrosine kinase 3 
SYN1                  0.034   synapsin I isoform Ia 
SYN1                  0.034   synapsin I isoform Ib 
LOC649238             0.031   PREDICTED: similar to hCG1645335 
NACA                  0.028   nascent polypeptide-associated complex alpha subuni...
LOC100293818          0.028   PREDICTED: hypothetical protein 
LOC100288796          0.028   PREDICTED: hypothetical protein 
LOC100288796          0.028   PREDICTED: hypothetical protein XP_002343710 
LOC100293848          0.025   PREDICTED: hypothetical protein 
LOC100290829          0.025   PREDICTED: hypothetical protein XP_002346522 
LOC100288535          0.025   PREDICTED: hypothetical protein XP_002342360 
LOC649238             0.025   PREDICTED: similar to hCG1645335 
LOC100287104          0.025   PREDICTED: hypothetical protein XP_002343630 
ASCL5                 0.025   PREDICTED: achaete-scute complex homolog 5 (Drosoph...
LOC100289316          0.025   PREDICTED: hypothetical protein 
LOC100289917          0.025   PREDICTED: hypothetical protein XP_002347096 
ASCL5                 0.025   PREDICTED: achaete-scute complex homolog 5 (Drosoph...
LOC100289316          0.025   PREDICTED: hypothetical protein XP_002343619 
ASCL5                 0.025   PREDICTED: achaete-scute complex homolog 5 
LOC100130982          0.022   PREDICTED: hypothetical protein 
LOC100130982          0.022   PREDICTED: hypothetical protein 
LOC100130982          0.022   PREDICTED: hypothetical protein 
C14orf104             0.022   kintoun isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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