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Search of human proteins with 239756063
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756063 PREDICTED: hypothetical protein [Homo sapiens]
(358 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756063 PREDICTED: hypothetical protein [Homo sapiens] 728 0.0
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 35 0.079
gi|13994236 cat eye syndrome chromosome region, candidate 6 isof... 35 0.079
gi|56606142 complement component 1, q subcomponent-like 4 [Homo ... 35 0.079
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 35 0.079
gi|116235472 SH3-domain GRB2-like (endophilin) interacting prote... 35 0.10
gi|157041215 SPR1 protein [Homo sapiens] 35 0.10
gi|48255889 protein kinase C substrate 80K-H isoform 1 [Homo sap... 35 0.14
gi|169177031 PREDICTED: similar to hCG30082, partial [Homo sapiens] 34 0.18
gi|40807471 transcription termination factor, RNA polymerase II ... 34 0.18
gi|24308547 hypothetical protein LOC196500 [Homo sapiens] 34 0.18
gi|16950645 neurotrophic factor artemin isoform 2 [Homo sapiens] 33 0.30
gi|209954778 neurotrophic factor artemin isoform 3 precursor [Ho... 33 0.30
gi|209977029 neurotrophic factor artemin isoform 3 precursor [Ho... 33 0.30
gi|56549696 E1A binding protein p400 [Homo sapiens] 33 0.30
gi|50959191 rho guanine nucleotide exchange factor 5 [Homo sapiens] 33 0.30
gi|153281158 dual specificity phosphatase 8 [Homo sapiens] 33 0.30
gi|40789265 beta 1,4-N-acetylgalactosaminyltransferase-transfera... 33 0.39
gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens] 33 0.39
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 33 0.51
gi|169202233 PREDICTED: hypothetical protein [Homo sapiens] 33 0.51
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 33 0.51
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 33 0.51
gi|150170670 piccolo isoform 2 [Homo sapiens] 33 0.51
gi|150378539 piccolo isoform 1 [Homo sapiens] 33 0.51
gi|223468693 hypothetical protein LOC100130361 [Homo sapiens] 32 0.67
gi|223468690 hypothetical protein LOC100132994 [Homo sapiens] 32 0.67
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 32 0.67
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 32 0.67
gi|239750101 PREDICTED: hypothetical protein [Homo sapiens] 32 0.67
>gi|239756063 PREDICTED: hypothetical protein [Homo sapiens]
Length = 358
Score = 728 bits (1879), Expect = 0.0
Identities = 358/358 (100%), Positives = 358/358 (100%)
Query: 1 MTLPDPVTAALGVQRPRVEGNQQHHLPLQQSALQTHPTARKSTPTTPQPVRFSCSPMLAS 60
MTLPDPVTAALGVQRPRVEGNQQHHLPLQQSALQTHPTARKSTPTTPQPVRFSCSPMLAS
Sbjct: 1 MTLPDPVTAALGVQRPRVEGNQQHHLPLQQSALQTHPTARKSTPTTPQPVRFSCSPMLAS 60
Query: 61 RQVPLVPLTLYLSTEGLLGTGEGEGLGGAGGAVVGEGLSCSQRRPTSPAEAAVGKVRLDG 120
RQVPLVPLTLYLSTEGLLGTGEGEGLGGAGGAVVGEGLSCSQRRPTSPAEAAVGKVRLDG
Sbjct: 61 RQVPLVPLTLYLSTEGLLGTGEGEGLGGAGGAVVGEGLSCSQRRPTSPAEAAVGKVRLDG 120
Query: 121 GIMERYGHVVHVDLGATNTSFTEKAAEKLAIMHAVPLPFFTINIAADAQCMRPVNSREDG 180
GIMERYGHVVHVDLGATNTSFTEKAAEKLAIMHAVPLPFFTINIAADAQCMRPVNSREDG
Sbjct: 121 GIMERYGHVVHVDLGATNTSFTEKAAEKLAIMHAVPLPFFTINIAADAQCMRPVNSREDG 180
Query: 181 DHQKLSRKYDRRISVRRGALKAQLTHLQKSMGEAAGSFTVVLTCYLTSGGESAKASGLSE 240
DHQKLSRKYDRRISVRRGALKAQLTHLQKSMGEAAGSFTVVLTCYLTSGGESAKASGLSE
Sbjct: 181 DHQKLSRKYDRRISVRRGALKAQLTHLQKSMGEAAGSFTVVLTCYLTSGGESAKASGLSE 240
Query: 241 QLSIWCPALTPALMSAVIKHLHRKTEFSETDLRGARSWDETSWSPKHLPLSSAPTLRPRE 300
QLSIWCPALTPALMSAVIKHLHRKTEFSETDLRGARSWDETSWSPKHLPLSSAPTLRPRE
Sbjct: 241 QLSIWCPALTPALMSAVIKHLHRKTEFSETDLRGARSWDETSWSPKHLPLSSAPTLRPRE 300
Query: 301 KHPPAGRAGRDQEQWVRGDPRDNDPAVPRPQDPGTSAPPGPAAPRPRLDPLTEQQQQQ 358
KHPPAGRAGRDQEQWVRGDPRDNDPAVPRPQDPGTSAPPGPAAPRPRLDPLTEQQQQQ
Sbjct: 301 KHPPAGRAGRDQEQWVRGDPRDNDPAVPRPQDPGTSAPPGPAAPRPRLDPLTEQQQQQ 358
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 35.4 bits (80), Expect = 0.079
Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 304 PAGRAGRDQEQWVRGDPRDNDPAVPR-----PQDPGTSAPPGPAAPR 345
P G AG+ EQ V GD P+ R P + G PPGPA PR
Sbjct: 651 PPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPR 697
Score = 34.3 bits (77), Expect = 0.18
Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 290 LSSAPTLRPREKHPPA-GRAGRDQEQWVRGDPRDNDPAVPRPQDPGTSAPPGPAAP 344
L+ P RE P A G GRD +GD + PA P P PG PGP P
Sbjct: 1005 LAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGP-PGAPGAPGAPGPVGP 1059
Score = 29.6 bits (65), Expect = 4.4
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 7/49 (14%)
Query: 303 PPA--GRAGRDQEQWVRGDPRDNDPAVPRPQ-----DPGTSAPPGPAAP 344
PP G AG+D E +G P PA R + PG PGPA P
Sbjct: 603 PPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGP 651
Score = 28.9 bits (63), Expect = 7.4
Identities = 19/44 (43%), Positives = 20/44 (45%), Gaps = 10/44 (22%)
Query: 298 PREKHPPAGRAGRDQEQWVRGDPRDNDPAVPRPQDPGTSAPPGP 341
PR PAG GRD G P P +P P PG PPGP
Sbjct: 119 PRGPRGPAGPPGRD------GIP--GQPGLPGP--PGPPGPPGP 152
Score = 28.5 bits (62), Expect = 9.7
Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 298 PREKHPPAGRAGRDQEQWVRGDPRDNDPAVPRPQ--DPGTSAPPGPAAP 344
P P G AG + + G P P PR + D G PPGP P
Sbjct: 1137 PAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGP 1185
>gi|13994236 cat eye syndrome chromosome region, candidate 6 isoform
a [Homo sapiens]
Length = 578
Score = 35.4 bits (80), Expect = 0.079
Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 7/100 (7%)
Query: 8 TAALGVQRPRVEGNQQHHLPLQQSALQTHPTARKSTPTTPQPVRFSCSPMLASR-QVPLV 66
+++ G +R + + PL +A P A+ P P PV FS S +S P
Sbjct: 69 SSSTGAEREDDDESLSVSKPLVPNAALLGPPAQVGAPAGPAPVAFSSSAATSSSTSTPTS 128
Query: 67 PLTLYLS------TEGLLGTGEGEGLGGAGGAVVGEGLSC 100
++ + G +G GGAGG G G SC
Sbjct: 129 SCSMTAADFGGGAAAGAVGGPGSRSAGGAGGTGTGSGASC 168
>gi|56606142 complement component 1, q subcomponent-like 4 [Homo
sapiens]
Length = 238
Score = 35.4 bits (80), Expect = 0.079
Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 291 SSAPTLRPREKHPPAGRAGRDQEQWVRGDPRDNDPAVPRPQDPGTSAPPGPAAPRP 346
+S P P K G GR + +RG P P P P +PG PPGP P P
Sbjct: 47 ASVPPFPPGAK----GEVGRRGKAGLRGPPGPPGPRGP-PGEPGRPGPPGPPGPGP 97
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 35.4 bits (80), Expect = 0.079
Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
Query: 285 PKHLPLSSAPTLRPREKHPPAGRAGRDQEQWVRGDPRDNDPAVPRPQD-----PGTSAPP 339
P+ PLS P P P A R E P ++ PA P P+D P +P
Sbjct: 666 PEESPLSPPPEESPTSPPPEASRLSPPPEDSPTSPPPEDSPASPPPEDSLMSLPLEESPL 725
Query: 340 GPAAPRPRLDPLTE 353
P P+L P +E
Sbjct: 726 LPLPEEPQLCPRSE 739
Score = 33.5 bits (75), Expect = 0.30
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Query: 285 PKHLPLSSAPTLRPREKHPPAGRAGRDQEQWVRGDPRDNDPAVPRPQDPGTSAPP--GPA 342
P+ P+S P P P A R E+ P + P P P+ S PP P
Sbjct: 576 PEESPMSPPPEESPMSPPPEASRLFPPFEESPLSPPPEESPLSPPPEASRLSPPPEDSPM 635
Query: 343 APRPRLDPLT 352
+P P P++
Sbjct: 636 SPPPEESPMS 645
Score = 31.6 bits (70), Expect = 1.1
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 11/71 (15%)
Query: 295 TLRPREKHP------PAGRAGRDQEQWVRGDPRDNDPAVPRPQDPGTSAPP--GPAAPRP 346
+++P+E P P G+AG E + + P +P P++ S PP P +P P
Sbjct: 403 SMQPKEPGPLQCEAKPLGKAGVQLEPQLEAPLNEEMPLLPPPEESPLSPPPEESPTSPPP 462
Query: 347 ---RLDPLTEQ 354
RL P E+
Sbjct: 463 EASRLSPPPEE 473
Score = 30.0 bits (66), Expect = 3.3
Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 2/68 (2%)
Query: 285 PKHLPLSSAPTLRPREKHPPAGRAGRDQEQWVRGDPRDNDPAVPRPQDPGTSAPP--GPA 342
P+ P+S P + P R E+ P + P P P+ S PP P
Sbjct: 639 PEESPMSPPPEVSRLSPLPVVSRLSPPPEESPLSPPPEESPTSPPPEASRLSPPPEDSPT 698
Query: 343 APRPRLDP 350
+P P P
Sbjct: 699 SPPPEDSP 706
Score = 29.3 bits (64), Expect = 5.7
Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 2/66 (3%)
Query: 289 PLSSAPTLRPREKHPPAGRAGRDQEQWVRGDPRDNDPAVPRPQDPGTSAP--PGPAAPRP 346
PLS P P P A R E+ P + P P P+ P P +P P
Sbjct: 553 PLSPPPEELPTSPPPEASRLSPPPEESPMSPPPEESPMSPPPEASRLFPPFEESPLSPPP 612
Query: 347 RLDPLT 352
PL+
Sbjct: 613 EESPLS 618
>gi|116235472 SH3-domain GRB2-like (endophilin) interacting protein
1 [Homo sapiens]
Length = 828
Score = 35.0 bits (79), Expect = 0.10
Identities = 38/128 (29%), Positives = 54/128 (42%), Gaps = 33/128 (25%)
Query: 234 KASGLSEQLSIWCPALTPALMSAVIKHLHRKTEFSETDLRGARSWDETSWSPKHLPLSSA 293
K +++ SI+ P L+P S + + FS+T SP+H+
Sbjct: 284 KLPSINDLDSIFGPVLSPK--SVAVNAEEKWVHFSDT-------------SPEHV----T 324
Query: 294 PTLRPREK--HPPAGRAGRDQEQWVRGDPRDNDPAVPRPQDPGTSAPPG-PAAPRPRLDP 350
P L PREK PPA +P D+ PA PG + PPG P PR L P
Sbjct: 325 PELTPREKVVSPPA----------TPDNPADS-PAPGPLGPPGPTGPPGPPGPPRNVLSP 373
Query: 351 LTEQQQQQ 358
L ++ Q+
Sbjct: 374 LNLEEVQK 381
>gi|157041215 SPR1 protein [Homo sapiens]
Length = 136
Score = 35.0 bits (79), Expect = 0.10
Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 6/71 (8%)
Query: 294 PTLRPREKHPPAGRAGRDQEQ------WVRGDPRDNDPAVPRPQDPGTSAPPGPAAPRPR 347
P P + PP R R W+ PR + P PRP DP + P P P P
Sbjct: 55 PGAPPLFEDPPPTRPSRPWRDLPETGVWLPEPPRTDPPQPPRPDDPWPAGPQPPENPWPP 114
Query: 348 LDPLTEQQQQQ 358
+ + Q++
Sbjct: 115 APEVDNRPQEE 125
>gi|48255889 protein kinase C substrate 80K-H isoform 1 [Homo
sapiens]
Length = 528
Score = 34.7 bits (78), Expect = 0.14
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Query: 285 PKHLPLSSAPTL-RPREKHPPAGRAGRDQEQWVRGDPRDNDPAVPRPQD----PGTSAPP 339
P LP SAP L P+E+ PP + ++E+ + + +D P +PP
Sbjct: 286 PTDLPAPSAPDLTEPKEEQPPVPSSPTEEEEEEEEEEEEEAEEEEEEEDSEEAPPPLSPP 345
Query: 340 GPAAP--RPRLDPLTEQQQ 356
PA+P ++ P EQ Q
Sbjct: 346 QPASPAEEDKMPPYDEQTQ 364
>gi|169177031 PREDICTED: similar to hCG30082, partial [Homo sapiens]
Length = 299
Score = 34.3 bits (77), Expect = 0.18
Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 3/103 (2%)
Query: 246 CPALTPALMSAVIKHLHRKTE-FSETDLRGARSWDETSWSPKHLPLSSAPTLRPREKHPP 304
CPA++PAL+ + + + + DL SW +S + T RPR+ P
Sbjct: 26 CPAVSPALLLPRPERVKQCCQPCPRRDLLA--SWPCRLFSSETPRPRDCETPRPRDCDTP 83
Query: 305 AGRAGRDQEQWVRGDPRDNDPAVPRPQDPGTSAPPGPAAPRPR 347
R PR D PRP+D T P PRPR
Sbjct: 84 RPRDCETPRPRDCDTPRPRDCETPRPRDCDTPRPRDCETPRPR 126
Score = 30.8 bits (68), Expect = 2.0
Identities = 19/53 (35%), Positives = 21/53 (39%)
Query: 295 TLRPREKHPPAGRAGRDQEQWVRGDPRDNDPAVPRPQDPGTSAPPGPAAPRPR 347
T RPR+ P R PR D PRP+D T P PRPR
Sbjct: 90 TPRPRDCDTPRPRDCETPRPRDCDTPRPRDCETPRPRDCDTPRPRDCETPRPR 142
Score = 30.4 bits (67), Expect = 2.6
Identities = 19/53 (35%), Positives = 21/53 (39%)
Query: 295 TLRPREKHPPAGRAGRDQEQWVRGDPRDNDPAVPRPQDPGTSAPPGPAAPRPR 347
T RPR+ P R PR D PRP+D T P PRPR
Sbjct: 130 TPRPRDCETPRPRDCETPRPRDCDTPRPRDCDTPRPRDCDTPRPRDCDTPRPR 182
Score = 29.6 bits (65), Expect = 4.4
Identities = 19/53 (35%), Positives = 21/53 (39%)
Query: 295 TLRPREKHPPAGRAGRDQEQWVRGDPRDNDPAVPRPQDPGTSAPPGPAAPRPR 347
T RPR+ P R PR D PRP+D T P PRPR
Sbjct: 114 TPRPRDCETPRPRDCDTPRPRDCETPRPRDCETPRPRDCDTPRPRDCDTPRPR 166
Score = 29.6 bits (65), Expect = 4.4
Identities = 19/53 (35%), Positives = 21/53 (39%)
Query: 295 TLRPREKHPPAGRAGRDQEQWVRGDPRDNDPAVPRPQDPGTSAPPGPAAPRPR 347
T RPR+ P R PR D PRP+D T P PRPR
Sbjct: 122 TPRPRDCDTPRPRDCETPRPRDCETPRPRDCDTPRPRDCDTPRPRDCDTPRPR 174
Score = 29.6 bits (65), Expect = 4.4
Identities = 19/53 (35%), Positives = 21/53 (39%)
Query: 295 TLRPREKHPPAGRAGRDQEQWVRGDPRDNDPAVPRPQDPGTSAPPGPAAPRPR 347
T RPR+ P R PR D PRP+D T P PRPR
Sbjct: 138 TPRPRDCETPRPRDCDTPRPRDCDTPRPRDCDTPRPRDCDTPRPRDCDTPRPR 190
Score = 29.3 bits (64), Expect = 5.7
Identities = 19/53 (35%), Positives = 21/53 (39%)
Query: 295 TLRPREKHPPAGRAGRDQEQWVRGDPRDNDPAVPRPQDPGTSAPPGPAAPRPR 347
T RPR+ P R PR D PRP+D T P PRPR
Sbjct: 146 TPRPRDCDTPRPRDCDTPRPRDCDTPRPRDCDTPRPRDCDTPRPRDCDTPRPR 198
>gi|40807471 transcription termination factor, RNA polymerase II
[Homo sapiens]
Length = 1162
Score = 34.3 bits (77), Expect = 0.18
Identities = 26/117 (22%), Positives = 43/117 (36%), Gaps = 12/117 (10%)
Query: 228 SGGESAKASGLSEQLSIWCPALTPALMSAVIKHLHRKTEFSETDLRGARSWDETSWSPKH 287
S K+SG S+ + L + + +++H S+ G + + T+W K
Sbjct: 233 SASSQEKSSGKSQDVQRESEPLREKVTQLLPQNVHSHNSISKPQKGGPLNKEYTNWEAKE 292
Query: 288 LPLSSAPTLRPREKHPPAGRAGRDQEQWVRGDPRDNDPAVPRPQDPGTSAPPGPAAP 344
P+++ +K P G R +VP P P A PAAP
Sbjct: 293 TKAKDGPSIQATQKSLPQGHF----------QERPETHSVPAPGGPAAQA--APAAP 337
>gi|24308547 hypothetical protein LOC196500 [Homo sapiens]
Length = 282
Score = 34.3 bits (77), Expect = 0.18
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
Query: 291 SSAPTLRPREKHPPAGRAGRDQEQ----WVRGDPRDNDPAVPRPQD---PGTSAPPGPA 342
SS+P P PP R G + W R P P VPR + PGT+ P P+
Sbjct: 33 SSSPRTPPAPARPPCARGGPSAPRHVCVWERAPPPSRSPRVPRSRRQVLPGTAPPATPS 91
>gi|16950645 neurotrophic factor artemin isoform 2 [Homo sapiens]
Length = 237
Score = 33.5 bits (75), Expect = 0.30
Identities = 34/111 (30%), Positives = 42/111 (37%), Gaps = 25/111 (22%)
Query: 237 GLSEQLSIWCPALTPALMSAVIKHLHRKTEFSETDLRGARSWDETSWSPKHLPLSSAPTL 296
GLS Q ++W AL+S+V +E L A S +P+ P P L
Sbjct: 33 GLSAQPALWPTLAALALLSSV----------AEASLGSA----PRSPAPREGP---PPVL 75
Query: 297 RPREKHPPAGRAGRDQEQWVRGDPRDNDPAVPRPQDPGTSAPPGPAAPRPR 347
H P GR R W G R P RP P PP P + PR
Sbjct: 76 ASPAGHLPGGRTAR----WCSGRARRPPPQPSRPAPP----PPAPPSALPR 118
>gi|209954778 neurotrophic factor artemin isoform 3 precursor [Homo
sapiens]
Length = 228
Score = 33.5 bits (75), Expect = 0.30
Identities = 34/111 (30%), Positives = 42/111 (37%), Gaps = 25/111 (22%)
Query: 237 GLSEQLSIWCPALTPALMSAVIKHLHRKTEFSETDLRGARSWDETSWSPKHLPLSSAPTL 296
GLS Q ++W AL+S+V +E L A S +P+ P P L
Sbjct: 24 GLSAQPALWPTLAALALLSSV----------AEASLGSA----PRSPAPREGP---PPVL 66
Query: 297 RPREKHPPAGRAGRDQEQWVRGDPRDNDPAVPRPQDPGTSAPPGPAAPRPR 347
H P GR R W G R P RP P PP P + PR
Sbjct: 67 ASPAGHLPGGRTAR----WCSGRARRPPPQPSRPAPP----PPAPPSALPR 109
>gi|209977029 neurotrophic factor artemin isoform 3 precursor [Homo
sapiens]
Length = 228
Score = 33.5 bits (75), Expect = 0.30
Identities = 34/111 (30%), Positives = 42/111 (37%), Gaps = 25/111 (22%)
Query: 237 GLSEQLSIWCPALTPALMSAVIKHLHRKTEFSETDLRGARSWDETSWSPKHLPLSSAPTL 296
GLS Q ++W AL+S+V +E L A S +P+ P P L
Sbjct: 24 GLSAQPALWPTLAALALLSSV----------AEASLGSA----PRSPAPREGP---PPVL 66
Query: 297 RPREKHPPAGRAGRDQEQWVRGDPRDNDPAVPRPQDPGTSAPPGPAAPRPR 347
H P GR R W G R P RP P PP P + PR
Sbjct: 67 ASPAGHLPGGRTAR----WCSGRARRPPPQPSRPAPP----PPAPPSALPR 109
>gi|56549696 E1A binding protein p400 [Homo sapiens]
Length = 3122
Score = 33.5 bits (75), Expect = 0.30
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 320 PRDNDPAVPRPQDPGTSAPPGPAAPRPRLDPLTEQQQQ 357
P+ P +P+PQ G+ P GP A +P+ P + Q Q
Sbjct: 2517 PQQPPPPLPQPQAAGSQPPAGPPAVQPQPQPQPQTQPQ 2554
>gi|50959191 rho guanine nucleotide exchange factor 5 [Homo sapiens]
Length = 1597
Score = 33.5 bits (75), Expect = 0.30
Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 9/75 (12%)
Query: 288 LPLSSAPTL----RPREKHPPAGRAGRDQEQWVRGDPRDNDPAVPRPQDPGTSAPPG--- 340
LP +S P + RP P + + +W P P +P+P P SAP
Sbjct: 776 LPQASDPAVARQHRPLPSTPDSSHHAQATPRWRYNKPLPPTPDLPQPHLPPISAPGSSRI 835
Query: 341 --PAAPRPRLDPLTE 353
P P P +DP TE
Sbjct: 836 YRPLPPLPIIDPPTE 850
>gi|153281158 dual specificity phosphatase 8 [Homo sapiens]
Length = 625
Score = 33.5 bits (75), Expect = 0.30
Identities = 26/77 (33%), Positives = 30/77 (38%), Gaps = 11/77 (14%)
Query: 284 SPKHLPLSSAPTLRPREKH---PPAGRAGRDQEQWV--------RGDPRDNDPAVPRPQD 332
SP +AP RPR + PPAG R + R PR A+ P
Sbjct: 437 SPSPDSPDAAPEARPRPRRRPRPPAGSPARSPAHSLGLNFGDAARQTPRHGLSALSAPGL 496
Query: 333 PGTSAPPGPAAPRPRLD 349
PG P GP A P LD
Sbjct: 497 PGPGQPAGPGAWAPPLD 513
>gi|40789265 beta 1,4-N-acetylgalactosaminyltransferase-transferase
4 [Homo sapiens]
Length = 1039
Score = 33.1 bits (74), Expect = 0.39
Identities = 26/79 (32%), Positives = 28/79 (35%), Gaps = 7/79 (8%)
Query: 275 ARSWDETSWSPKHLPLSSAPTLRPREKHPPAGRAGRDQEQWVRGDPRDNDPAVPRPQDPG 334
A SW + P L L AP RP + PP R PR P P P PG
Sbjct: 493 ALSWAARAARPLPLFLGRAPPPRPAVEQPPPKVYVTRVRPGQRASPRAPAPRAPWPPFPG 552
Query: 335 TSAPPGP-------AAPRP 346
P P A PRP
Sbjct: 553 VFLHPRPLPRVQLRAPPRP 571
>gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens]
Length = 1714
Score = 33.1 bits (74), Expect = 0.39
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 304 PAGRAGRDQEQWVRGDPRDNDPAVPRPQDPGTSAPPGPAAPRPRLD 349
P GR G E+ RG+ P PR Q PG PPG PR ++D
Sbjct: 1442 PTGRTGPRGEKGFRGE---TGPQGPRGQ-PGPPGPPGAPGPRKQMD 1483
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 32.7 bits (73), Expect = 0.51
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 288 LPLSSAPTLRPREKHPPAGRAGRDQEQWVRGDPRDNDPAVPRPQDPGTSAPPG-PAAPR- 345
L ++A + P+ P G + VR P PA P P ++PPG PA+PR
Sbjct: 730 LQQAAAMSFCPQVARPLVGPLALGSPRLVRRPPPGPAPAAASPGPPPPASPPGAPASPRA 789
Query: 346 PRLDP 350
PR P
Sbjct: 790 PRTSP 794
>gi|169202233 PREDICTED: hypothetical protein [Homo sapiens]
Length = 381
Score = 32.7 bits (73), Expect = 0.51
Identities = 18/56 (32%), Positives = 23/56 (41%)
Query: 292 SAPTLRPREKHPPAGRAGRDQEQWVRGDPRDNDPAVPRPQDPGTSAPPGPAAPRPR 347
+A T RP+ A + RG+PR +P P P PP AP PR
Sbjct: 279 AATTTRPQTTPAAASPDLPQPAERSRGEPRPAEPRAPPRPPPAARRPPPATAPSPR 334
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 32.7 bits (73), Expect = 0.51
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Query: 284 SPKHLPLSSAPTLRPREKHPPAGRAGRDQEQWVRGDPRDNDPAVPR----PQDPGTSAPP 339
S + PLSS+ R PP D + P N P++ R P P + PP
Sbjct: 234 SIRQSPLSSSSPFSNRPPLPPTPSRALDDKPPPPPPPVGNRPSIHREAVPPPPPQNNKPP 293
Query: 340 GPAAPRP 346
P+ PRP
Sbjct: 294 VPSTPRP 300
Score = 30.4 bits (67), Expect = 2.6
Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 4/59 (6%)
Query: 297 RPREKHPPAGRAGRDQEQWVRGDPRDND----PAVPRPQDPGTSAPPGPAAPRPRLDPL 351
+P PP G + V P N+ P+ PRP + PP P RP PL
Sbjct: 263 KPPPPPPPVGNRPSIHREAVPPPPPQNNKPPVPSTPRPSASSQAPPPPPPPSRPGPPPL 321
>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 32.7 bits (73), Expect = 0.51
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Query: 284 SPKHLPLSSAPTLRPREKHPPAGRAGRDQEQWVRGDPRDNDPAVPR----PQDPGTSAPP 339
S + PLSS+ R PP D + P N P++ R P P + PP
Sbjct: 234 SIRQSPLSSSSPFSNRPPLPPTPSRALDDKPPPPPPPVGNRPSIHREAVPPPPPQNNKPP 293
Query: 340 GPAAPRP 346
P+ PRP
Sbjct: 294 VPSTPRP 300
Score = 30.4 bits (67), Expect = 2.6
Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 4/59 (6%)
Query: 297 RPREKHPPAGRAGRDQEQWVRGDPRDND----PAVPRPQDPGTSAPPGPAAPRPRLDPL 351
+P PP G + V P N+ P+ PRP + PP P RP PL
Sbjct: 263 KPPPPPPPVGNRPSIHREAVPPPPPQNNKPPVPSTPRPSASSQAPPPPPPPSRPGPPPL 321
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 32.7 bits (73), Expect = 0.51
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 285 PKHLPLSSAPTLRPREKHPPAGRAGRDQEQWVRGDPRDNDPAVPRPQDPGTSAPPG--PA 342
P P +P + P + + Q + P+ PA P PQ PG++ PP P
Sbjct: 476 PAKPPPQQPGPAKPPPQQPGSAKPPSQQPGSTKPPPQQPGPAKPSPQQPGSTKPPSQQPG 535
Query: 343 APRP 346
+ +P
Sbjct: 536 SAKP 539
Score = 31.2 bits (69), Expect = 1.5
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 9/69 (13%)
Query: 294 PTLRPREKHPPAGRAGRDQEQWVRGDPRDNDPAVPRPQDPGTSAP----PGPAAPRPRLD 349
P+ P PP + G + P+ A P Q PG++ P PGPA P P+
Sbjct: 470 PSQLPGPAKPPPQQPGP-----AKPPPQQPGSAKPPSQQPGSTKPPPQQPGPAKPSPQQP 524
Query: 350 PLTEQQQQQ 358
T+ QQ
Sbjct: 525 GSTKPPSQQ 533
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 32.7 bits (73), Expect = 0.51
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 285 PKHLPLSSAPTLRPREKHPPAGRAGRDQEQWVRGDPRDNDPAVPRPQDPGTSAPPG--PA 342
P P +P + P + + Q + P+ PA P PQ PG++ PP P
Sbjct: 476 PAKPPPQQPGPAKPPPQQPGSAKPPSQQPGSTKPPPQQPGPAKPSPQQPGSTKPPSQQPG 535
Query: 343 APRP 346
+ +P
Sbjct: 536 SAKP 539
Score = 31.2 bits (69), Expect = 1.5
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 9/69 (13%)
Query: 294 PTLRPREKHPPAGRAGRDQEQWVRGDPRDNDPAVPRPQDPGTSAP----PGPAAPRPRLD 349
P+ P PP + G + P+ A P Q PG++ P PGPA P P+
Sbjct: 470 PSQLPGPAKPPPQQPGP-----AKPPPQQPGSAKPPSQQPGSTKPPPQQPGPAKPSPQQP 524
Query: 350 PLTEQQQQQ 358
T+ QQ
Sbjct: 525 GSTKPPSQQ 533
>gi|223468693 hypothetical protein LOC100130361 [Homo sapiens]
Length = 514
Score = 32.3 bits (72), Expect = 0.67
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 13/68 (19%)
Query: 304 PAGRAGRDQEQWVRGDPRDNDPAVPRPQDPGTSAP----PGPAAPR---------PRLDP 350
P R G + RG+ +DP + PQ PGTS P PG PR P + P
Sbjct: 410 PTHRPGLPRLSVRRGEFSSSDPNIRAPQLPGTSEPSAYSPGGLVPRRHAPSGNQQPPVHP 469
Query: 351 LTEQQQQQ 358
++QQQ
Sbjct: 470 PRPERQQQ 477
>gi|223468690 hypothetical protein LOC100132994 [Homo sapiens]
Length = 514
Score = 32.3 bits (72), Expect = 0.67
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 13/68 (19%)
Query: 304 PAGRAGRDQEQWVRGDPRDNDPAVPRPQDPGTSAP----PGPAAPR---------PRLDP 350
P R G + RG+ +DP + PQ PGTS P PG PR P + P
Sbjct: 410 PTHRPGLPRLSVRRGEFSSSDPNIRAPQLPGTSEPSAYSPGGLVPRRHAPSGNQQPPVHP 469
Query: 351 LTEQQQQQ 358
++QQQ
Sbjct: 470 PRPERQQQ 477
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 32.3 bits (72), Expect = 0.67
Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 8/55 (14%)
Query: 298 PREKHPPAGRAGRDQEQWVRGD--------PRDNDPAVPRPQDPGTSAPPGPAAP 344
P+ P G AG + RGD PR D P +PG PPGP P
Sbjct: 118 PKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGP 172
Score = 31.2 bits (69), Expect = 1.5
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 10/56 (17%)
Query: 298 PREKHPPAGRAGRDQEQWV---------RGDPRDNDPAVPRPQDPGTSAPPGPAAP 344
PR P G +G+D + RG + PA P P +PG PPGP P
Sbjct: 1162 PRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGP-PGNPGPPGPPGPPGP 1216
Score = 28.9 bits (63), Expect = 7.4
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 7/47 (14%)
Query: 298 PREKHPPAGRAGRDQEQWVRGDPRDNDPAVPRPQDPGTSAPPGPAAP 344
P P G AG Q +G+P + P +PG S P GP P
Sbjct: 205 PMGPRGPPGPAGAPGPQGFQGNPGE-------PGEPGVSGPMGPRGP 244
Score = 28.5 bits (62), Expect = 9.7
Identities = 18/52 (34%), Positives = 19/52 (36%), Gaps = 11/52 (21%)
Query: 304 PAGRAGRDQEQWVRGDP-----------RDNDPAVPRPQDPGTSAPPGPAAP 344
PAG GR+ G P R AV P PG PGPA P
Sbjct: 1030 PAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGP 1081
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 32.3 bits (72), Expect = 0.67
Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 8/55 (14%)
Query: 298 PREKHPPAGRAGRDQEQWVRGD--------PRDNDPAVPRPQDPGTSAPPGPAAP 344
P+ P G AG + RGD PR D P +PG PPGP P
Sbjct: 49 PKGPPGPQGPAGEQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGP 103
Score = 31.2 bits (69), Expect = 1.5
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 10/56 (17%)
Query: 298 PREKHPPAGRAGRDQEQWV---------RGDPRDNDPAVPRPQDPGTSAPPGPAAP 344
PR P G +G+D + RG + PA P P +PG PPGP P
Sbjct: 1093 PRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGP-PGNPGPPGPPGPPGP 1147
Score = 28.9 bits (63), Expect = 7.4
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 7/47 (14%)
Query: 298 PREKHPPAGRAGRDQEQWVRGDPRDNDPAVPRPQDPGTSAPPGPAAP 344
P P G AG Q +G+P + P +PG S P GP P
Sbjct: 136 PMGPRGPPGPAGAPGPQGFQGNPGE-------PGEPGVSGPMGPRGP 175
Score = 28.5 bits (62), Expect = 9.7
Identities = 18/52 (34%), Positives = 19/52 (36%), Gaps = 11/52 (21%)
Query: 304 PAGRAGRDQEQWVRGDP-----------RDNDPAVPRPQDPGTSAPPGPAAP 344
PAG GR+ G P R AV P PG PGPA P
Sbjct: 961 PAGEPGREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGP 1012
>gi|239750101 PREDICTED: hypothetical protein [Homo sapiens]
Length = 365
Score = 32.3 bits (72), Expect = 0.67
Identities = 19/60 (31%), Positives = 24/60 (40%)
Query: 292 SAPTLRPREKHPPAGRAGRDQEQWVRGDPRDNDPAVPRPQDPGTSAPPGPAAPRPRLDPL 351
+A T RP+ A + RG+PR +P P P PP P AP PL
Sbjct: 279 AATTTRPQTTPAAASPDLPQPAERSRGEPRPAEPRAPPRPPPAARRPPPPPAPGAPARPL 338
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.131 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,720,274
Number of Sequences: 37866
Number of extensions: 946352
Number of successful extensions: 7036
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 242
Number of HSP's that attempted gapping in prelim test: 5999
Number of HSP's gapped (non-prelim): 1326
length of query: 358
length of database: 18,247,518
effective HSP length: 103
effective length of query: 255
effective length of database: 14,347,320
effective search space: 3658566600
effective search space used: 3658566600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.