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Search of human proteins with 239755934
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755934 PREDICTED: hypothetical protein [Homo sapiens]
(133 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755934 PREDICTED: hypothetical protein [Homo sapiens] 286 4e-78
gi|239750471 PREDICTED: hypothetical protein [Homo sapiens] 286 4e-78
gi|239744764 PREDICTED: hypothetical protein XP_002343268 [Homo ... 286 4e-78
gi|239743834 PREDICTED: similar to Putative uncharacterized prot... 51 2e-07
gi|33624896 ADAM metallopeptidase with thrombospondin type 1 mot... 29 1.3
gi|148833508 notch1 preproprotein [Homo sapiens] 28 2.8
gi|239756595 PREDICTED: hypothetical protein [Homo sapiens] 28 2.8
gi|239753480 PREDICTED: hypothetical protein [Homo sapiens] 28 2.8
gi|33598931 scavenger receptor class F, member 1 isoform 3 precu... 27 3.7
gi|52426745 Cas-Br-M (murine) ecotropic retroviral transforming ... 27 4.8
gi|38570062 hypothetical protein LOC51608 [Homo sapiens] 27 4.8
gi|169163744 PREDICTED: similar to ACR [Homo sapiens] 27 6.3
gi|169163027 PREDICTED: similar to Putative acrosin-like proteas... 27 6.3
gi|54144631 phosphatase and actin regulator 1 [Homo sapiens] 27 6.3
gi|148613878 acrosin precursor [Homo sapiens] 27 6.3
gi|34485720 echinoderm microtubule associated protein like 5 [Ho... 27 6.3
gi|239755545 PREDICTED: otogelin isoform 1 [Homo sapiens] 26 8.2
gi|239755543 PREDICTED: otogelin isoform 2 [Homo sapiens] 26 8.2
gi|239749989 PREDICTED: otogelin isoform 2 [Homo sapiens] 26 8.2
gi|239749987 PREDICTED: otogelin isoform 1 [Homo sapiens] 26 8.2
gi|239744300 PREDICTED: otogelin isoform 2 [Homo sapiens] 26 8.2
gi|239744298 PREDICTED: otogelin isoform 1 [Homo sapiens] 26 8.2
gi|239743198 PREDICTED: hypothetical protein XP_002342772 [Homo ... 26 8.2
gi|239508872 PREDICTED: similar to Putative uncharacterized prot... 26 8.2
gi|24586688 ankyrin repeat and SOCS box-containing protein 16 [H... 26 8.2
>gi|239755934 PREDICTED: hypothetical protein [Homo sapiens]
Length = 133
Score = 286 bits (731), Expect = 4e-78
Identities = 133/133 (100%), Positives = 133/133 (100%)
Query: 1 MQTLVKVKHSTRVRAMRTCLPNRLTLTHSAEKKSKEHHYYILWEQGPNCLIVGTSSQHLP 60
MQTLVKVKHSTRVRAMRTCLPNRLTLTHSAEKKSKEHHYYILWEQGPNCLIVGTSSQHLP
Sbjct: 1 MQTLVKVKHSTRVRAMRTCLPNRLTLTHSAEKKSKEHHYYILWEQGPNCLIVGTSSQHLP 60
Query: 61 WQHAILPRPLPAIPTSIPACKQWWALALSWSSTSAGLPGHKYLHLLLSRPLALCVSLTLT 120
WQHAILPRPLPAIPTSIPACKQWWALALSWSSTSAGLPGHKYLHLLLSRPLALCVSLTLT
Sbjct: 61 WQHAILPRPLPAIPTSIPACKQWWALALSWSSTSAGLPGHKYLHLLLSRPLALCVSLTLT 120
Query: 121 FPWKPNKKQEPGR 133
FPWKPNKKQEPGR
Sbjct: 121 FPWKPNKKQEPGR 133
>gi|239750471 PREDICTED: hypothetical protein [Homo sapiens]
Length = 133
Score = 286 bits (731), Expect = 4e-78
Identities = 133/133 (100%), Positives = 133/133 (100%)
Query: 1 MQTLVKVKHSTRVRAMRTCLPNRLTLTHSAEKKSKEHHYYILWEQGPNCLIVGTSSQHLP 60
MQTLVKVKHSTRVRAMRTCLPNRLTLTHSAEKKSKEHHYYILWEQGPNCLIVGTSSQHLP
Sbjct: 1 MQTLVKVKHSTRVRAMRTCLPNRLTLTHSAEKKSKEHHYYILWEQGPNCLIVGTSSQHLP 60
Query: 61 WQHAILPRPLPAIPTSIPACKQWWALALSWSSTSAGLPGHKYLHLLLSRPLALCVSLTLT 120
WQHAILPRPLPAIPTSIPACKQWWALALSWSSTSAGLPGHKYLHLLLSRPLALCVSLTLT
Sbjct: 61 WQHAILPRPLPAIPTSIPACKQWWALALSWSSTSAGLPGHKYLHLLLSRPLALCVSLTLT 120
Query: 121 FPWKPNKKQEPGR 133
FPWKPNKKQEPGR
Sbjct: 121 FPWKPNKKQEPGR 133
>gi|239744764 PREDICTED: hypothetical protein XP_002343268 [Homo
sapiens]
Length = 133
Score = 286 bits (731), Expect = 4e-78
Identities = 133/133 (100%), Positives = 133/133 (100%)
Query: 1 MQTLVKVKHSTRVRAMRTCLPNRLTLTHSAEKKSKEHHYYILWEQGPNCLIVGTSSQHLP 60
MQTLVKVKHSTRVRAMRTCLPNRLTLTHSAEKKSKEHHYYILWEQGPNCLIVGTSSQHLP
Sbjct: 1 MQTLVKVKHSTRVRAMRTCLPNRLTLTHSAEKKSKEHHYYILWEQGPNCLIVGTSSQHLP 60
Query: 61 WQHAILPRPLPAIPTSIPACKQWWALALSWSSTSAGLPGHKYLHLLLSRPLALCVSLTLT 120
WQHAILPRPLPAIPTSIPACKQWWALALSWSSTSAGLPGHKYLHLLLSRPLALCVSLTLT
Sbjct: 61 WQHAILPRPLPAIPTSIPACKQWWALALSWSSTSAGLPGHKYLHLLLSRPLALCVSLTLT 120
Query: 121 FPWKPNKKQEPGR 133
FPWKPNKKQEPGR
Sbjct: 121 FPWKPNKKQEPGR 133
>gi|239743834 PREDICTED: similar to Putative uncharacterized protein
C21orf15 [Homo sapiens]
Length = 109
Score = 51.2 bits (121), Expect = 2e-07
Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 9/95 (9%)
Query: 7 VKHSTRVRAMRTCLPNRLTLTHSAEKKSKEHHYYILWEQGPNCLIVGTSSQHLPWQHAIL 66
+KHS RA+R+ LP+ LT+ S Q PN L GTS + Q A+
Sbjct: 1 MKHSLGTRAVRSILPDHLTVETSLSHPPG---------QRPNSLTAGTSLPYPAGQQALP 51
Query: 67 PRPLPAIPTSIPACKQWWALALSWSSTSAGLPGHK 101
P PL P PAC++ LA+SW G +K
Sbjct: 52 PTPLLPSPMITPACERQLVLAVSWFPPLQGFASNK 86
>gi|33624896 ADAM metallopeptidase with thrombospondin type 1 motif, 9
preproprotein [Homo sapiens]
Length = 1935
Score = 28.9 bits (63), Expect = 1.3
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 64 AILPRPLPAIPTSIPACKQWWALALSWSSTS 94
A LPRP+ S+ C QW AL WSS S
Sbjct: 1223 ATLPRPVAKEECSVTPCGQW--KALDWSSCS 1251
>gi|148833508 notch1 preproprotein [Homo sapiens]
Length = 2555
Score = 27.7 bits (60), Expect = 2.8
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 63 HAILPRPLPAIPTSIPA 79
H ILP+ PA+PTS+P+
Sbjct: 2454 HTILPQESPALPTSLPS 2470
>gi|239756595 PREDICTED: hypothetical protein [Homo sapiens]
Length = 211
Score = 27.7 bits (60), Expect = 2.8
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 61 WQHAILPRPLPAIPTSIPACKQWWALALSWSSTSAG---LPGHKYLHLLLS 108
W A+ P +P++ P C LA SW T G L G H ++S
Sbjct: 39 WTPALAPFTWTRLPSTCPVCVVRMGLAESWPPTLGGGEALRGAHEFHAVIS 89
>gi|239753480 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1344
Score = 27.7 bits (60), Expect = 2.8
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 83 WWALALSW--SSTSAGLPGHKYLHLLLSRPLALCVSLTLTFPWKP 125
W L W + G+ G K LSRPLAL +T P++P
Sbjct: 800 WHVRILVWFLHNVLLGMLGEKLWESSLSRPLALSAVMTTRDPYQP 844
>gi|33598931 scavenger receptor class F, member 1 isoform 3
precursor [Homo sapiens]
Length = 569
Score = 27.3 bits (59), Expect = 3.7
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 55 SSQHLPWQHAILPRPLPAIPTSIPA 79
SS LPW A RPLPA P P+
Sbjct: 487 SSHKLPWVTASSSRPLPAGPLMTPS 511
>gi|52426745 Cas-Br-M (murine) ecotropic retroviral transforming
sequence [Homo sapiens]
Length = 906
Score = 26.9 bits (58), Expect = 4.8
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 66 LPRPLPAIPTSIPACKQWW 84
LPRP+P +P S P+ W
Sbjct: 591 LPRPIPKVPVSAPSSSDPW 609
>gi|38570062 hypothetical protein LOC51608 [Homo sapiens]
Length = 327
Score = 26.9 bits (58), Expect = 4.8
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 87 ALSWSSTSAGLPGHKYLHLLLSRPL 111
AL WSS +G GH LH LL+ L
Sbjct: 129 ALKWSSGGSGKLGHPRLHQLLALTL 153
>gi|169163744 PREDICTED: similar to ACR [Homo sapiens]
Length = 299
Score = 26.6 bits (57), Expect = 6.3
Identities = 11/19 (57%), Positives = 11/19 (57%)
Query: 56 SQHLPWQHAILPRPLPAIP 74
S HLPW PRPLP P
Sbjct: 255 SAHLPWYFQPPPRPLPPRP 273
>gi|169163027 PREDICTED: similar to Putative acrosin-like protease
[Homo sapiens]
Length = 355
Score = 26.6 bits (57), Expect = 6.3
Identities = 11/19 (57%), Positives = 11/19 (57%)
Query: 56 SQHLPWQHAILPRPLPAIP 74
S HLPW PRPLP P
Sbjct: 255 SAHLPWYFQPPPRPLPPRP 273
>gi|54144631 phosphatase and actin regulator 1 [Homo sapiens]
Length = 580
Score = 26.6 bits (57), Expect = 6.3
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 21 PNRLTLTHSAEKKSKE----HHYYILWEQGPNCLIVGTSSQHLPWQHAILP 67
P+ ++++A+K ++ HH+ +L Q + L G+ QHLP LP
Sbjct: 254 PDLSLVSYTAQKSGQQGVAQHHHTVLPSQIQHQLQYGSHGQHLPSTTGSLP 304
>gi|148613878 acrosin precursor [Homo sapiens]
Length = 421
Score = 26.6 bits (57), Expect = 6.3
Identities = 11/19 (57%), Positives = 11/19 (57%)
Query: 56 SQHLPWQHAILPRPLPAIP 74
S HLPW PRPLP P
Sbjct: 321 SAHLPWYFQPPPRPLPPRP 339
>gi|34485720 echinoderm microtubule associated protein like 5 [Homo
sapiens]
Length = 1977
Score = 26.6 bits (57), Expect = 6.3
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 4 LVKVKHSTRVRAMRTCLPNRLTLTHSAEKKSKEHHYYILWEQ 45
+V H+ V AM T L + L +T E+ SKE LW+Q
Sbjct: 1604 IVARAHNGPVFAMYTTLRDGLIVTGGKERPSKEGGAVKLWDQ 1645
>gi|239755545 PREDICTED: otogelin isoform 1 [Homo sapiens]
Length = 2852
Score = 26.2 bits (56), Expect = 8.2
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 7/58 (12%)
Query: 60 PWQHAILPRPLPAIPTSIPACKQWWALALSWSSTSAGLPGHKYLHLLLSRPLALCVSL 117
P QH + PA+P PA A S S+ + GL ++ L +RP L L
Sbjct: 1691 PAQHTTMATRSPALPPETPA-------AASLSTATDGLAATPFMSLESTRPSQLLSGL 1741
>gi|239755543 PREDICTED: otogelin isoform 2 [Homo sapiens]
Length = 2924
Score = 26.2 bits (56), Expect = 8.2
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 7/58 (12%)
Query: 60 PWQHAILPRPLPAIPTSIPACKQWWALALSWSSTSAGLPGHKYLHLLLSRPLALCVSL 117
P QH + PA+P PA A S S+ + GL ++ L +RP L L
Sbjct: 1763 PAQHTTMATRSPALPPETPA-------AASLSTATDGLAATPFMSLESTRPSQLLSGL 1813
>gi|239749989 PREDICTED: otogelin isoform 2 [Homo sapiens]
Length = 2852
Score = 26.2 bits (56), Expect = 8.2
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 7/58 (12%)
Query: 60 PWQHAILPRPLPAIPTSIPACKQWWALALSWSSTSAGLPGHKYLHLLLSRPLALCVSL 117
P QH + PA+P PA A S S+ + GL ++ L +RP L L
Sbjct: 1691 PAQHTTMATRSPALPPETPA-------AASLSTATDGLAATPFMSLESTRPSQLLSGL 1741
>gi|239749987 PREDICTED: otogelin isoform 1 [Homo sapiens]
Length = 2924
Score = 26.2 bits (56), Expect = 8.2
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 7/58 (12%)
Query: 60 PWQHAILPRPLPAIPTSIPACKQWWALALSWSSTSAGLPGHKYLHLLLSRPLALCVSL 117
P QH + PA+P PA A S S+ + GL ++ L +RP L L
Sbjct: 1763 PAQHTTMATRSPALPPETPA-------AASLSTATDGLAATPFMSLESTRPSQLLSGL 1813
>gi|239744300 PREDICTED: otogelin isoform 2 [Homo sapiens]
Length = 2852
Score = 26.2 bits (56), Expect = 8.2
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 7/58 (12%)
Query: 60 PWQHAILPRPLPAIPTSIPACKQWWALALSWSSTSAGLPGHKYLHLLLSRPLALCVSL 117
P QH + PA+P PA A S S+ + GL ++ L +RP L L
Sbjct: 1691 PAQHTTMATRSPALPPETPA-------AASLSTATDGLAATPFMSLESTRPSQLLSGL 1741
>gi|239744298 PREDICTED: otogelin isoform 1 [Homo sapiens]
Length = 2924
Score = 26.2 bits (56), Expect = 8.2
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 7/58 (12%)
Query: 60 PWQHAILPRPLPAIPTSIPACKQWWALALSWSSTSAGLPGHKYLHLLLSRPLALCVSL 117
P QH + PA+P PA A S S+ + GL ++ L +RP L L
Sbjct: 1763 PAQHTTMATRSPALPPETPA-------AASLSTATDGLAATPFMSLESTRPSQLLSGL 1813
>gi|239743198 PREDICTED: hypothetical protein XP_002342772 [Homo
sapiens]
Length = 203
Score = 26.2 bits (56), Expect = 8.2
Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 11/70 (15%)
Query: 46 GPNCLIVGTSSQHLPWQHAILPRPLPAIPTSIPACKQWWALALSWSSTSAGLPGHKYLHL 105
GP+CL VG S + LP TS+ + L S SA P K +
Sbjct: 124 GPDCLQVGLSKDS-----SCLPE------TSVGPSRPQVGLPRPSSGLSAASPSAKVPRV 172
Query: 106 LLSRPLALCV 115
LSRP + C+
Sbjct: 173 SLSRPRSSCL 182
>gi|239508872 PREDICTED: similar to Putative uncharacterized protein
FLJ46348 [Homo sapiens]
Length = 203
Score = 26.2 bits (56), Expect = 8.2
Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 11/70 (15%)
Query: 46 GPNCLIVGTSSQHLPWQHAILPRPLPAIPTSIPACKQWWALALSWSSTSAGLPGHKYLHL 105
GP+CL VG S + LP TS+ + L S SA P K +
Sbjct: 124 GPDCLQVGLSKDS-----SCLPE------TSVGPSRPQVGLPRPSSGLSAASPSAKVPRV 172
Query: 106 LLSRPLALCV 115
LSRP + C+
Sbjct: 173 SLSRPRSSCL 182
>gi|24586688 ankyrin repeat and SOCS box-containing protein 16 [Homo
sapiens]
Length = 453
Score = 26.2 bits (56), Expect = 8.2
Identities = 25/92 (27%), Positives = 34/92 (36%), Gaps = 9/92 (9%)
Query: 50 LIVGTSSQHLPWQH-----AILPRPLPAIPTSIPACKQWWALAL----SWSSTSAGLPGH 100
+IV T S L W + P+ P +I + + A + A + G
Sbjct: 85 MIVETVSNQLAWSAEQGFWVLTPKTKQTAPLAIATARGYTDCARHLIRQGAELDARVGGR 144
Query: 101 KYLHLLLSRPLALCVSLTLTFPWKPNKKQEPG 132
LH +R CV L LTF K N E G
Sbjct: 145 AALHEACARAQFDCVRLLLTFGAKANVLTEEG 176
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.132 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,153,322
Number of Sequences: 37866
Number of extensions: 282649
Number of successful extensions: 709
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 685
Number of HSP's gapped (non-prelim): 32
length of query: 133
length of database: 18,247,518
effective HSP length: 91
effective length of query: 42
effective length of database: 14,801,712
effective search space: 621671904
effective search space used: 621671904
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.