Guide to the Human Genome
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Name: C7orf20 Sequence: fasta or formatted (327aa) NCBI GI: 38570062
Description:

hypothetical protein LOC51608

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         24           5
 C cysteine            1.2          4           1
 D aspartate           4.0         13           1
 E glutamate           8.6         28           2
 F phenylalanine       5.2         17           2
 G glycine             8.0         26           2
 H histidine           2.4          8           1
 I isoleucine          1.2          4           1
 K lysine              4.0         13           1
 L leucine            12.5         41           3
 M methionine          3.4         11           1
 N asparagine          3.4         11           1
 P proline             4.0         13           2
 Q glutamine           4.9         16           2
 R arginine            5.2         17           2
 S serine             10.1         33           2
 T threonine           3.7         12           2
 V valine              6.1         20           2
 W tryptophan          0.9          3           1
 Y tyrosine            4.0         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC51608 
MAN1B1                0.011   alpha 1,2-mannosidase 
LOC100292202          0.010   PREDICTED: similar to solute carrier family 25, mem...
SLC25A25              0.010   solute carrier family 25, member 25 isoform b 
ZMYND12               0.008   zinc finger, MYND-type containing 12 isoform 2 [Hom...
ZMYND12               0.008   zinc finger, MYND-type containing 12 isoform 1 [Hom...
C1orf163              0.008   hypothetical protein LOC65260 
LOC100293478          0.005   PREDICTED: similar to pleckstrin homology domain co...
LOC100293333          0.005   PREDICTED: similar to hCG1802898 
LOC100291232          0.005   PREDICTED: hypothetical protein XP_002347841 
TTC30B                0.005   tetratricopeptide repeat domain 30B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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