Guide to the Human Genome
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Name: PHACTR1 Sequence: fasta or formatted (580aa) NCBI GI: 54144631
Description:

phosphatase and actin regulator 1

Referenced in:

Serine / Threonine Protein Phosphatases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         32           2
 C cysteine            1.4          8           1
 D aspartate           6.0         35           3
 E glutamate          10.2         59           7
 F phenylalanine       1.7         10           2
 G glycine             4.0         23           2
 H histidine           2.8         16           3
 I isoleucine          4.0         23           1
 K lysine              6.4         37           3
 L leucine            10.0         58           3
 M methionine          2.9         17           1
 N asparagine          2.1         12           1
 P proline             7.2         42           2
 Q glutamine           4.8         28           2
 R arginine            9.1         53           3
 S serine              9.8         57           3
 T threonine           4.7         27           2
 V valine              4.5         26           2
 W tryptophan          0.5          3           1
 Y tyrosine            2.4         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   phosphatase and actin regulator 1 
PHACTR3               0.302   phosphatase and actin regulator 3 isoform 1 
PHACTR3               0.299   phosphatase and actin regulator 3 isoform 3 
PHACTR3               0.294   phosphatase and actin regulator 3 isoform 2 
PHACTR2               0.216   phosphatase and actin regulator 2 isoform 4 
PHACTR2               0.216   phosphatase and actin regulator 2 isoform 3 
PHACTR2               0.216   phosphatase and actin regulator 2 isoform 2 
PHACTR2               0.216   phosphatase and actin regulator 2 isoform 1 
PHACTR4               0.208   phosphatase and actin regulator 4 isoform 2 
PHACTR4               0.208   phosphatase and actin regulator 4 isoform 1 
MAP4K4                0.028   mitogen-activated protein kinase kinase kinase kinas...
MAP4K4                0.026   mitogen-activated protein kinase kinase kinase kinas...
MAP4K4                0.026   mitogen-activated protein kinase kinase kinase kinas...
TNIK                  0.024   TRAF2 and NCK interacting kinase isoform 8 
TNIK                  0.024   TRAF2 and NCK interacting kinase isoform 7 
TNIK                  0.024   TRAF2 and NCK interacting kinase isoform 6 
TNIK                  0.024   TRAF2 and NCK interacting kinase isoform 5 
TNIK                  0.024   TRAF2 and NCK interacting kinase isoform 4 
TNIK                  0.024   TRAF2 and NCK interacting kinase isoform 3 
TNIK                  0.024   TRAF2 and NCK interacting kinase isoform 2 
TNIK                  0.024   TRAF2 and NCK interacting kinase isoform 1 
TCHH                  0.021   trichohyalin 
CDC2L1                0.019   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.019   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CCDC34                0.019   coiled-coil domain containing 34 isoform 1 
CDC2L2                0.019   cell division cycle 2-like 2 isoform 4 
GIGYF2                0.018   GRB10 interacting GYF protein 2 isoform c 
GIGYF2                0.018   GRB10 interacting GYF protein 2 isoform a 
GIGYF2                0.018   GRB10 interacting GYF protein 2 isoform b 
GIGYF2                0.018   GRB10 interacting GYF protein 2 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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