Guide to the Human Genome
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Name: LOC100288701 Sequence: fasta or formatted (133aa) NCBI GI: 239744764
Description:

PREDICTED: hypothetical protein XP_002343268

Not currently referenced in the text

Other entries for this name:
alt mRNA {133aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8          9           1
 C cysteine            3.0          4           1
 D aspartate           0.0          0           0
 E glutamate           3.0          4           1
 F phenylalanine       0.8          1           1
 G glycine             3.8          5           1
 H histidine           6.0          8           2
 I isoleucine          3.8          5           1
 K lysine              7.5         10           2
 L leucine            15.0         20           3
 M methionine          1.5          2           1
 N asparagine          2.3          3           1
 P proline             9.8         13           1
 Q glutamine           4.5          6           1
 R arginine            5.3          7           1
 S serine              9.0         12           2
 T threonine           7.5         10           1
 V valine              3.8          5           1
 W tryptophan          4.5          6           2
 Y tyrosine            2.3          3           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343268 
LOC100293671          1.000   PREDICTED: hypothetical protein 
LOC100288701          1.000   PREDICTED: hypothetical protein 
LOC100132955          0.100   PREDICTED: similar to Putative uncharacterized prot...
ADAMTS9               0.015   ADAM metallopeptidase with thrombospondin type 1 mot...
NOTCH1                0.011   notch1 preproprotein 
LOC100292519          0.011   PREDICTED: hypothetical protein 
LOC100293485          0.011   PREDICTED: hypothetical protein 
SCARF1                0.008   scavenger receptor class F, member 1 isoform 3 precu...
CBL                   0.008   Cas-Br-M (murine) ecotropic retroviral transforming ...
C7orf20               0.008   hypothetical protein LOC51608 
LOC645529             0.008   PREDICTED: similar to ACR 
LOC645529             0.008   PREDICTED: similar to Putative acrosin-like proteas...
PHACTR1               0.008   phosphatase and actin regulator 1 
ACR                   0.008   acrosin precursor 
EML5                  0.008   echinoderm microtubule associated protein like 5 [Ho...
OTOG                  0.004   PREDICTED: otogelin isoform 1 
OTOG                  0.004   PREDICTED: otogelin isoform 2 
OTOG                  0.004   PREDICTED: otogelin isoform 2 
OTOG                  0.004   PREDICTED: otogelin isoform 1 
OTOG                  0.004   PREDICTED: otogelin isoform 2 
OTOG                  0.004   PREDICTED: otogelin isoform 1 
LOC100287930          0.004   PREDICTED: hypothetical protein XP_002342772 
LOC100287930          0.004   PREDICTED: similar to Putative uncharacterized prot...
ASB16                 0.004   ankyrin repeat and SOCS box-containing protein 16 [H...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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