Guide to the Human Genome
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Name: LOC100132955 Sequence: fasta or formatted (109aa) NCBI GI: 239743834
Description:

PREDICTED: similar to Putative uncharacterized protein C21orf15

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.2         10           1
 C cysteine            2.8          3           1
 D aspartate           0.9          1           1
 E glutamate           2.8          3           1
 F phenylalanine       4.6          5           2
 G glycine             5.5          6           1
 H histidine           2.8          3           1
 I isoleucine          2.8          3           1
 K lysine              2.8          3           1
 L leucine            12.8         14           2
 M methionine          1.8          2           1
 N asparagine          3.7          4           1
 P proline            13.8         15           2
 Q glutamine           4.6          5           2
 R arginine            3.7          4           1
 S serine             10.1         11           1
 T threonine           6.4          7           1
 V valine              7.3          8           1
 W tryptophan          0.9          1           1
 Y tyrosine            0.9          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to Putative uncharacterized prot... 
LOC100293671          0.130   PREDICTED: hypothetical protein 
LOC100288701          0.130   PREDICTED: hypothetical protein 
LOC100288701          0.130   PREDICTED: hypothetical protein XP_002343268 
HEG1                  0.050   HEG homolog 1 
ATXN7L2               0.040   ataxin 7-like 2 
GNAS                  0.040   GNAS complex locus alex 
CACNA1B               0.040   calcium channel, voltage-dependent, N type, alpha 1B ...
LOC100293036          0.035   PREDICTED: hypothetical protein 
LOC100291660          0.035   PREDICTED: hypothetical protein XP_002345223 
LOC100289147          0.035   PREDICTED: hypothetical protein 
LOC100289147          0.035   PREDICTED: hypothetical protein XP_002343718 
INPP5D                0.030   SH2 containing inositol phosphatase isoform b 
INPP5D                0.030   SH2 containing inositol phosphatase isoform a 
ZNF474                0.025   zinc finger protein 474 
CYTSA                 0.025   cytospin A 
CYTSA                 0.025   cytospin A 
SRCAP                 0.025   Snf2-related CBP activator protein 
TP63                  0.025   tumor protein p63 isoform 5 
TP63                  0.025   tumor protein p63 isoform 4 
TP63                  0.025   tumor protein p63 isoform 2 
TP63                  0.025   tumor protein p63 isoform 1 
LOC100131880          0.025   PREDICTED: hypothetical protein 
STRC                  0.025   stereocilin 
C19orf34              0.025   chromosome 19 open reading frame 34 
GRLF1                 0.020   glucocorticoid receptor DNA binding factor 1 
LOC100289065          0.020   PREDICTED: hypothetical protein 
LOC100132839          0.020   PREDICTED: hypothetical protein 
LOC100289065          0.020   PREDICTED: hypothetical protein XP_002343789 
LOC100132839          0.020   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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