Guide to the Human Genome
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Name: LOC100287930 Sequence: fasta or formatted (203aa) NCBI GI: 239508872
Description:

PREDICTED: similar to Putative uncharacterized protein FLJ46348

Not currently referenced in the text

Other entries for this name:
alt mRNA {203aa} PREDICTED: hypothetical protein XP_002342772
alt prot {178aa} PREDICTED: similar to Putative uncharacterized protein FLJ46348, ...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.3         23           2
 C cysteine            3.9          8           1
 D aspartate           2.0          4           1
 E glutamate           1.0          2           1
 F phenylalanine       2.5          5           1
 G glycine             9.9         20           2
 H histidine           2.0          4           1
 I isoleucine          0.0          0           0
 K lysine              1.0          2           1
 L leucine            13.3         27           3
 M methionine          1.5          3           1
 N asparagine          0.0          0           0
 P proline            16.3         33           2
 Q glutamine           4.9         10           2
 R arginine            8.4         17           2
 S serine             15.3         31           3
 T threonine           1.5          3           1
 V valine              3.9          8           1
 W tryptophan          1.5          3           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to Putative uncharacterized prot... 
LOC100287930          1.000   PREDICTED: hypothetical protein XP_002342772 
LOC100287930          0.826   PREDICTED: similar to Putative uncharacterized prot...
LOC729660             0.240   PREDICTED: similar to Putative uncharacterized prot...
LOC731275             0.207   PREDICTED: similar to Putative uncharacterized prot...
LOC729660             0.162   PREDICTED: similar to Putative uncharacterized prot...
LOC100292804          0.116   PREDICTED: similar to hCG1739112 
LOC100289693          0.116   PREDICTED: hypothetical protein XP_002347909 
LOC100131871          0.106   PREDICTED: similar to hCG1779533 
LOC100293878          0.091   PREDICTED: similar to hCG1779533 
LOC100131871          0.091   PREDICTED: similar to hCG1779533 
LOC100131871          0.091   PREDICTED: similar to hCG1779533 
LOC100287093          0.086   PREDICTED: hypothetical protein XP_002342765 
LOC100287093          0.086   PREDICTED: similar to Putative uncharacterized prot...
LOC100288360          0.081   PREDICTED: hypothetical protein XP_002342802 
LOC729737             0.081   PREDICTED: hypothetical protein 
LOC100288360          0.081   PREDICTED: similar to Putative uncharacterized prot...
LOC728417             0.071   PREDICTED: hypothetical protein 
LOC728417             0.071   PREDICTED: hypothetical protein 
LOC728417             0.071   PREDICTED: hypothetical protein isoform 1 
LOC728417             0.068   PREDICTED: hypothetical protein isoform 2 
LOC100134105          0.068   PREDICTED: similar to hCG1793472 
LOC729218             0.066   PREDICTED: hypothetical protein 
LOC100129904          0.061   PREDICTED: hypothetical protein 
LOC100129904          0.061   PREDICTED: hypothetical protein 
LOC100129904          0.061   PREDICTED: hypothetical protein 
LOC100129904          0.061   PREDICTED: hypothetical protein 
LOC100292470          0.061   PREDICTED: similar to hCG1779533 
LOC100132050          0.058   PREDICTED: similar to hCG1779533 
LOC100132050          0.058   PREDICTED: similar to hCG1779533 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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