Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239755812
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755812 PREDICTED: similar to spectrin, beta,
non-erythrocytic 2 [Homo sapiens]
(158 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755812 PREDICTED: similar to spectrin, beta, non-erythrocy... 324 2e-89
gi|105990514 filamin B, beta (actin binding protein 278) [Homo s... 218 2e-57
gi|188595687 gamma filamin isoform b [Homo sapiens] 192 8e-50
gi|116805322 gamma filamin isoform a [Homo sapiens] 192 8e-50
gi|160420317 filamin A, alpha isoform 2 [Homo sapiens] 191 2e-49
gi|116063573 filamin A, alpha isoform 1 [Homo sapiens] 191 2e-49
gi|115430237 spectrin, beta, non-erythrocytic 4 isoform sigma1 [... 76 1e-14
gi|67782321 spectrin beta isoform a [Homo sapiens] 75 2e-14
gi|67782319 spectrin beta isoform b [Homo sapiens] 75 2e-14
gi|112382252 spectrin, beta, non-erythrocytic 1 isoform 2 [Homo ... 75 3e-14
gi|112382250 spectrin, beta, non-erythrocytic 1 isoform 1 [Homo ... 75 3e-14
gi|5902122 spectrin, beta, non-erythrocytic 2 [Homo sapiens] 74 4e-14
gi|4557241 actinin, alpha 3 [Homo sapiens] 74 5e-14
gi|12025678 actinin, alpha 4 [Homo sapiens] 73 9e-14
gi|33188445 microfilament and actin filament cross-linker protei... 73 1e-13
gi|194097352 actinin, alpha 1 isoform c [Homo sapiens] 72 3e-13
gi|194097350 actinin, alpha 1 isoform a [Homo sapiens] 72 3e-13
gi|4501891 actinin, alpha 1 isoform b [Homo sapiens] 72 3e-13
gi|4501893 actinin, alpha 2 [Homo sapiens] 71 3e-13
gi|221316624 dystonin isoform 4 [Homo sapiens] 71 4e-13
gi|221316622 dystonin isoform 3 [Homo sapiens] 71 4e-13
gi|221316618 dystonin isoform 2 [Homo sapiens] 71 4e-13
gi|34577047 dystonin isoform 1 [Homo sapiens] 71 4e-13
gi|169218211 PREDICTED: similar to plectin 1, partial [Homo sapi... 69 2e-12
gi|41322923 plectin 1 isoform 11 [Homo sapiens] 69 2e-12
gi|41322914 plectin 1 isoform 10 [Homo sapiens] 69 2e-12
gi|41322919 plectin 1 isoform 8 [Homo sapiens] 69 2e-12
gi|41322910 plectin 1 isoform 7 [Homo sapiens] 69 2e-12
gi|41322916 plectin 1 isoform 6 [Homo sapiens] 69 2e-12
gi|41322908 plectin 1 isoform 3 [Homo sapiens] 69 2e-12
>gi|239755812 PREDICTED: similar to spectrin, beta, non-erythrocytic
2 [Homo sapiens]
Length = 158
Score = 324 bits (830), Expect = 2e-89
Identities = 158/158 (100%), Positives = 158/158 (100%)
Query: 1 MYLKYHQRPTFRQMQLKNVSVALEFLDRDSIKLVSIDSKATVDGNLKLILGLVWTLILRY 60
MYLKYHQRPTFRQMQLKNVSVALEFLDRDSIKLVSIDSKATVDGNLKLILGLVWTLILRY
Sbjct: 1 MYLKYHQRPTFRQMQLKNVSVALEFLDRDSIKLVSIDSKATVDGNLKLILGLVWTLILRY 60
Query: 61 SISTPVCEDEGDDDAKKQMRKQRLLGWIQNKVPYLPITNFSQNWQDSKALRALVDSCAPG 120
SISTPVCEDEGDDDAKKQMRKQRLLGWIQNKVPYLPITNFSQNWQDSKALRALVDSCAPG
Sbjct: 61 SISTPVCEDEGDDDAKKQMRKQRLLGWIQNKVPYLPITNFSQNWQDSKALRALVDSCAPG 120
Query: 121 PPRLESKARPLGEADVGGPARVRASDPGAAGGWEGSPP 158
PPRLESKARPLGEADVGGPARVRASDPGAAGGWEGSPP
Sbjct: 121 PPRLESKARPLGEADVGGPARVRASDPGAAGGWEGSPP 158
>gi|105990514 filamin B, beta (actin binding protein 278) [Homo
sapiens]
Length = 2602
Score = 218 bits (554), Expect = 2e-57
Identities = 107/120 (89%), Positives = 111/120 (92%)
Query: 1 MYLKYHQRPTFRQMQLKNVSVALEFLDRDSIKLVSIDSKATVDGNLKLILGLVWTLILRY 60
MY KYHQRPTFRQMQL+NVSVALEFLDR+SIKLVSIDSKA VDGNLKLILGLVWTLIL Y
Sbjct: 62 MYRKYHQRPTFRQMQLENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLILHY 121
Query: 61 SISTPVCEDEGDDDAKKQMRKQRLLGWIQNKVPYLPITNFSQNWQDSKALRALVDSCAPG 120
SIS PV EDEGDDDAKKQ KQRLLGWIQNK+PYLPITNF+QNWQD KAL ALVDSCAPG
Sbjct: 122 SISMPVWEDEGDDDAKKQTPKQRLLGWIQNKIPYLPITNFNQNWQDGKALGALVDSCAPG 181
>gi|188595687 gamma filamin isoform b [Homo sapiens]
Length = 2692
Score = 192 bits (489), Expect = 8e-50
Identities = 93/120 (77%), Positives = 106/120 (88%)
Query: 1 MYLKYHQRPTFRQMQLKNVSVALEFLDRDSIKLVSIDSKATVDGNLKLILGLVWTLILRY 60
MY K+H RP FRQM+L+NVSVALEFL+R+ IKLVSIDSKA VDGNLKLILGL+WTLIL Y
Sbjct: 82 MYRKFHPRPNFRQMKLENVSVALEFLEREHIKLVSIDSKAIVDGNLKLILGLIWTLILHY 141
Query: 61 SISTPVCEDEGDDDAKKQMRKQRLLGWIQNKVPYLPITNFSQNWQDSKALRALVDSCAPG 120
SIS P+ EDE D+DA+KQ KQRLLGWIQNKVP LPITNF+++WQD KAL ALVD+CAPG
Sbjct: 142 SISMPMWEDEDDEDARKQTPKQRLLGWIQNKVPQLPITNFNRDWQDGKALGALVDNCAPG 201
>gi|116805322 gamma filamin isoform a [Homo sapiens]
Length = 2725
Score = 192 bits (489), Expect = 8e-50
Identities = 93/120 (77%), Positives = 106/120 (88%)
Query: 1 MYLKYHQRPTFRQMQLKNVSVALEFLDRDSIKLVSIDSKATVDGNLKLILGLVWTLILRY 60
MY K+H RP FRQM+L+NVSVALEFL+R+ IKLVSIDSKA VDGNLKLILGL+WTLIL Y
Sbjct: 82 MYRKFHPRPNFRQMKLENVSVALEFLEREHIKLVSIDSKAIVDGNLKLILGLIWTLILHY 141
Query: 61 SISTPVCEDEGDDDAKKQMRKQRLLGWIQNKVPYLPITNFSQNWQDSKALRALVDSCAPG 120
SIS P+ EDE D+DA+KQ KQRLLGWIQNKVP LPITNF+++WQD KAL ALVD+CAPG
Sbjct: 142 SISMPMWEDEDDEDARKQTPKQRLLGWIQNKVPQLPITNFNRDWQDGKALGALVDNCAPG 201
>gi|160420317 filamin A, alpha isoform 2 [Homo sapiens]
Length = 2647
Score = 191 bits (485), Expect = 2e-49
Identities = 93/120 (77%), Positives = 108/120 (90%)
Query: 1 MYLKYHQRPTFRQMQLKNVSVALEFLDRDSIKLVSIDSKATVDGNLKLILGLVWTLILRY 60
M+ K++QRPTFRQMQL+NVSVALEFLDR+SIKLVSIDSKA VDGNLKLILGL+WTLIL Y
Sbjct: 89 MHRKHNQRPTFRQMQLENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLIWTLILHY 148
Query: 61 SISTPVCEDEGDDDAKKQMRKQRLLGWIQNKVPYLPITNFSQNWQDSKALRALVDSCAPG 120
SIS P+ ++E D++AKKQ KQRLLGWIQNK+P LPITNFS++WQ +AL ALVDSCAPG
Sbjct: 149 SISMPMWDEEEDEEAKKQTPKQRLLGWIQNKLPQLPITNFSRDWQSGRALGALVDSCAPG 208
>gi|116063573 filamin A, alpha isoform 1 [Homo sapiens]
Length = 2639
Score = 191 bits (485), Expect = 2e-49
Identities = 93/120 (77%), Positives = 108/120 (90%)
Query: 1 MYLKYHQRPTFRQMQLKNVSVALEFLDRDSIKLVSIDSKATVDGNLKLILGLVWTLILRY 60
M+ K++QRPTFRQMQL+NVSVALEFLDR+SIKLVSIDSKA VDGNLKLILGL+WTLIL Y
Sbjct: 89 MHRKHNQRPTFRQMQLENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLIWTLILHY 148
Query: 61 SISTPVCEDEGDDDAKKQMRKQRLLGWIQNKVPYLPITNFSQNWQDSKALRALVDSCAPG 120
SIS P+ ++E D++AKKQ KQRLLGWIQNK+P LPITNFS++WQ +AL ALVDSCAPG
Sbjct: 149 SISMPMWDEEEDEEAKKQTPKQRLLGWIQNKLPQLPITNFSRDWQSGRALGALVDSCAPG 208
>gi|115430237 spectrin, beta, non-erythrocytic 4 isoform sigma1
[Homo sapiens]
Length = 2564
Score = 75.9 bits (185), Expect = 1e-14
Identities = 47/118 (39%), Positives = 67/118 (56%), Gaps = 8/118 (6%)
Query: 8 RPTFRQMQ---LKNVSVALEFLDRDSIKLVSIDSKATVDGNLKLILGLVWTLILRYSIST 64
RPT +M+ L+NV AL+FL + L ++ S VDGN +L LGLVWT+ILR+ I
Sbjct: 109 RPTRGRMRIHSLENVDKALQFLKEQRVHLENVGSHDIVDGNHRLTLGLVWTIILRFQIQ- 167
Query: 65 PVCEDEGDDDAKKQMRKQRLLGWIQNKV---PYLPITNFSQNWQDSKALRALVDSCAP 119
V + E +D+ + + K LL W Q K P + I NF+ +W+D A AL+ P
Sbjct: 168 -VIKIETEDNRETRSAKDALLLWCQMKTAGYPEVNIQNFTTSWRDGLAFNALIHRHRP 224
>gi|67782321 spectrin beta isoform a [Homo sapiens]
Length = 2328
Score = 75.5 bits (184), Expect = 2e-14
Identities = 43/118 (36%), Positives = 68/118 (57%), Gaps = 8/118 (6%)
Query: 8 RPTFRQMQ---LKNVSVALEFLDRDSIKLVSIDSKATVDGNLKLILGLVWTLILRYSIST 64
+PT +M+ L+NV AL+FL + L ++ S VDGN +L+LGL+WT+ILR+ I
Sbjct: 102 KPTKGKMRIHCLENVDKALQFLKEQRVHLENMGSHDIVDGNHRLVLGLIWTIILRFQIQD 161
Query: 65 PVCEDEGDDDAKKQMRKQRLLGWIQNKV---PYLPITNFSQNWQDSKALRALVDSCAP 119
V + + + + + K LL W Q K P++ +TNF+ +W+D A AL+ P
Sbjct: 162 IVVQTQ--EGRETRSAKDALLLWCQMKTAGYPHVNVTNFTSSWKDGLAFNALIHKHRP 217
>gi|67782319 spectrin beta isoform b [Homo sapiens]
Length = 2137
Score = 75.5 bits (184), Expect = 2e-14
Identities = 43/118 (36%), Positives = 68/118 (57%), Gaps = 8/118 (6%)
Query: 8 RPTFRQMQ---LKNVSVALEFLDRDSIKLVSIDSKATVDGNLKLILGLVWTLILRYSIST 64
+PT +M+ L+NV AL+FL + L ++ S VDGN +L+LGL+WT+ILR+ I
Sbjct: 102 KPTKGKMRIHCLENVDKALQFLKEQRVHLENMGSHDIVDGNHRLVLGLIWTIILRFQIQD 161
Query: 65 PVCEDEGDDDAKKQMRKQRLLGWIQNKV---PYLPITNFSQNWQDSKALRALVDSCAP 119
V + + + + + K LL W Q K P++ +TNF+ +W+D A AL+ P
Sbjct: 162 IVVQTQ--EGRETRSAKDALLLWCQMKTAGYPHVNVTNFTSSWKDGLAFNALIHKHRP 217
>gi|112382252 spectrin, beta, non-erythrocytic 1 isoform 2 [Homo
sapiens]
Length = 2155
Score = 74.7 bits (182), Expect = 3e-14
Identities = 46/118 (38%), Positives = 66/118 (55%), Gaps = 8/118 (6%)
Query: 8 RPTFRQMQ---LKNVSVALEFLDRDSIKLVSIDSKATVDGNLKLILGLVWTLILRYSIST 64
+PT +M+ L+NV AL+FL + L ++ S VDGN +L LGL+WT+ILR+ I
Sbjct: 89 KPTKGRMRIHCLENVDKALQFLKEQRVHLENMGSHDIVDGNHRLTLGLIWTIILRFQIQD 148
Query: 65 PVCEDEGDDDAKKQMRKQRLLGWIQNKV---PYLPITNFSQNWQDSKALRALVDSCAP 119
E E D+ +K+ K LL W Q K P + I NF+ +W+D A AL+ P
Sbjct: 149 ISVETE--DNKEKKSAKDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRP 204
>gi|112382250 spectrin, beta, non-erythrocytic 1 isoform 1 [Homo
sapiens]
Length = 2364
Score = 74.7 bits (182), Expect = 3e-14
Identities = 46/118 (38%), Positives = 66/118 (55%), Gaps = 8/118 (6%)
Query: 8 RPTFRQMQ---LKNVSVALEFLDRDSIKLVSIDSKATVDGNLKLILGLVWTLILRYSIST 64
+PT +M+ L+NV AL+FL + L ++ S VDGN +L LGL+WT+ILR+ I
Sbjct: 102 KPTKGRMRIHCLENVDKALQFLKEQRVHLENMGSHDIVDGNHRLTLGLIWTIILRFQIQD 161
Query: 65 PVCEDEGDDDAKKQMRKQRLLGWIQNKV---PYLPITNFSQNWQDSKALRALVDSCAP 119
E E D+ +K+ K LL W Q K P + I NF+ +W+D A AL+ P
Sbjct: 162 ISVETE--DNKEKKSAKDALLLWCQMKTAGYPNVNIHNFTTSWRDGMAFNALIHKHRP 217
>gi|5902122 spectrin, beta, non-erythrocytic 2 [Homo sapiens]
Length = 2390
Score = 74.3 bits (181), Expect = 4e-14
Identities = 46/118 (38%), Positives = 66/118 (55%), Gaps = 8/118 (6%)
Query: 8 RPTFRQMQ---LKNVSVALEFLDRDSIKLVSIDSKATVDGNLKLILGLVWTLILRYSIST 64
+PT +M+ L+NV AL+FL + L ++ S VDGN +L LGLVWT+ILR+ I
Sbjct: 105 KPTKGRMRIHCLENVDKALQFLKEQKVHLENMGSHDIVDGNHRLTLGLVWTIILRFQIQD 164
Query: 65 PVCEDEGDDDAKKQMRKQRLLGWIQNKV---PYLPITNFSQNWQDSKALRALVDSCAP 119
E E D+ +K+ K LL W Q K P + + NF+ +W+D A A+V P
Sbjct: 165 ISVETE--DNKEKKSAKDALLLWCQMKTAGYPNVNVHNFTTSWRDGLAFNAIVHKHRP 220
>gi|4557241 actinin, alpha 3 [Homo sapiens]
Length = 901
Score = 73.9 bits (180), Expect = 5e-14
Identities = 42/108 (38%), Positives = 64/108 (59%), Gaps = 11/108 (10%)
Query: 15 QLKNVSVALEFLDRDSIKLVSIDSKATVDGNLKLILGLVWTLILRYSISTPVCEDEGDDD 74
++ NV+ AL+F+ +KLVSI ++ VDGNLK+ LG++WT+ILR++I D
Sbjct: 103 KIANVNKALDFIASKGVKLVSIGAEEIVDGNLKMTLGMIWTIILRFAIQ--------DIS 154
Query: 75 AKKQMRKQRLLGWIQNK-VPY--LPITNFSQNWQDSKALRALVDSCAP 119
++ K+ LL W Q K PY + + NF +W+D AL AL+ P
Sbjct: 155 VEETSAKEGLLLWCQRKTAPYRNVNVQNFHTSWKDGLALCALIHRHRP 202
>gi|12025678 actinin, alpha 4 [Homo sapiens]
Length = 911
Score = 73.2 bits (178), Expect = 9e-14
Identities = 42/116 (36%), Positives = 65/116 (56%), Gaps = 11/116 (9%)
Query: 7 QRPTFRQMQLKNVSVALEFLDRDSIKLVSIDSKATVDGNLKLILGLVWTLILRYSISTPV 66
+R R ++ NV+ AL+F+ +KLVSI ++ VDGN K+ LG++WT+ILR++I
Sbjct: 100 ERGKMRVHKINNVNKALDFIASKGVKLVSIGAEEIVDGNAKMTLGMIWTIILRFAIQ--- 156
Query: 67 CEDEGDDDAKKQMRKQRLLGWIQNK-VPY--LPITNFSQNWQDSKALRALVDSCAP 119
D ++ K+ LL W Q K PY + + NF +W+D A AL+ P
Sbjct: 157 -----DISVEETSAKEGLLLWCQRKTAPYKNVNVQNFHISWKDGLAFNALIHRHRP 207
>gi|33188445 microfilament and actin filament cross-linker protein
isoform a [Homo sapiens]
Length = 5430
Score = 72.8 bits (177), Expect = 1e-13
Identities = 43/116 (37%), Positives = 60/116 (51%), Gaps = 7/116 (6%)
Query: 7 QRPTFRQMQLKNVSVALEFLDRDSIKLVSIDSKATVDGNLKLILGLVWTLILRYSISTPV 66
++ R +L+NV +AL+FL + +KLV+I + DGN KL LGL+WT+IL + IS
Sbjct: 127 EKGRMRFHRLQNVQIALDFLKQRQVKLVNIRNDDITDGNPKLTLGLIWTIILHFQISDIY 186
Query: 67 CEDEGDDDAKKQMRKQRLLGWIQNKV---PYLPITNFSQNWQDSKALRALVDSCAP 119
E D K++LL W Q + TNFS W D K AL+ P
Sbjct: 187 ISGESGD----MSAKEKLLLWTQKVTAGYTGIKCTNFSSCWSDGKMFNALIHRYRP 238
>gi|194097352 actinin, alpha 1 isoform c [Homo sapiens]
Length = 887
Score = 71.6 bits (174), Expect = 3e-13
Identities = 42/116 (36%), Positives = 65/116 (56%), Gaps = 11/116 (9%)
Query: 7 QRPTFRQMQLKNVSVALEFLDRDSIKLVSIDSKATVDGNLKLILGLVWTLILRYSISTPV 66
+R R ++ NV+ AL+F+ +KLVSI ++ VDGN+K+ LG++WT+ILR++I
Sbjct: 81 ERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNVKMTLGMIWTIILRFAIQ--- 137
Query: 67 CEDEGDDDAKKQMRKQRLLGWIQNK-VPY--LPITNFSQNWQDSKALRALVDSCAP 119
D ++ K+ LL W Q K PY + I NF +W+D AL+ P
Sbjct: 138 -----DISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFCALIHRHRP 188
>gi|194097350 actinin, alpha 1 isoform a [Homo sapiens]
Length = 914
Score = 71.6 bits (174), Expect = 3e-13
Identities = 42/116 (36%), Positives = 65/116 (56%), Gaps = 11/116 (9%)
Query: 7 QRPTFRQMQLKNVSVALEFLDRDSIKLVSIDSKATVDGNLKLILGLVWTLILRYSISTPV 66
+R R ++ NV+ AL+F+ +KLVSI ++ VDGN+K+ LG++WT+ILR++I
Sbjct: 81 ERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNVKMTLGMIWTIILRFAIQ--- 137
Query: 67 CEDEGDDDAKKQMRKQRLLGWIQNK-VPY--LPITNFSQNWQDSKALRALVDSCAP 119
D ++ K+ LL W Q K PY + I NF +W+D AL+ P
Sbjct: 138 -----DISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFCALIHRHRP 188
>gi|4501891 actinin, alpha 1 isoform b [Homo sapiens]
Length = 892
Score = 71.6 bits (174), Expect = 3e-13
Identities = 42/116 (36%), Positives = 65/116 (56%), Gaps = 11/116 (9%)
Query: 7 QRPTFRQMQLKNVSVALEFLDRDSIKLVSIDSKATVDGNLKLILGLVWTLILRYSISTPV 66
+R R ++ NV+ AL+F+ +KLVSI ++ VDGN+K+ LG++WT+ILR++I
Sbjct: 81 ERGKMRVHKISNVNKALDFIASKGVKLVSIGAEEIVDGNVKMTLGMIWTIILRFAIQ--- 137
Query: 67 CEDEGDDDAKKQMRKQRLLGWIQNK-VPY--LPITNFSQNWQDSKALRALVDSCAP 119
D ++ K+ LL W Q K PY + I NF +W+D AL+ P
Sbjct: 138 -----DISVEETSAKEGLLLWCQRKTAPYKNVNIQNFHISWKDGLGFCALIHRHRP 188
>gi|4501893 actinin, alpha 2 [Homo sapiens]
Length = 894
Score = 71.2 bits (173), Expect = 3e-13
Identities = 42/115 (36%), Positives = 65/115 (56%), Gaps = 11/115 (9%)
Query: 8 RPTFRQMQLKNVSVALEFLDRDSIKLVSIDSKATVDGNLKLILGLVWTLILRYSISTPVC 67
R R ++ NV+ AL+++ +KLVSI ++ VDGN+K+ LG++WT+ILR++I
Sbjct: 89 RGKMRFHKIANVNKALDYIASKGVKLVSIGAEEIVDGNVKMTLGMIWTIILRFAIQ---- 144
Query: 68 EDEGDDDAKKQMRKQRLLGWIQNK-VPY--LPITNFSQNWQDSKALRALVDSCAP 119
D ++ K+ LL W Q K PY + I NF +W+D L AL+ P
Sbjct: 145 ----DISVEETSAKEGLLLWCQRKTAPYRNVNIQNFHTSWKDGLGLCALIHRHRP 195
>gi|221316624 dystonin isoform 4 [Homo sapiens]
Length = 5526
Score = 70.9 bits (172), Expect = 4e-13
Identities = 43/116 (37%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 7 QRPTFRQMQLKNVSVALEFLDRDSIKLVSIDSKATVDGNLKLILGLVWTLILRYSISTPV 66
++ R +L+NV +AL++L R +KLV+I + DGN KL LGL+WT+IL + IS
Sbjct: 113 EKGRMRFHRLQNVQIALDYLKRRQVKLVNIRNDDITDGNPKLTLGLIWTIILHFQISDIH 172
Query: 67 CEDEGDDDAKKQMRKQRLLGWIQNKVP-YLPI--TNFSQNWQDSKALRALVDSCAP 119
E +D K+RLL W Q Y I NF+ W+D K A++ P
Sbjct: 173 VTGESED----MSAKERLLLWTQQATEGYAGIRCENFTTCWRDGKLFNAIIHKYRP 224
>gi|221316622 dystonin isoform 3 [Homo sapiens]
Length = 5537
Score = 70.9 bits (172), Expect = 4e-13
Identities = 43/116 (37%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 7 QRPTFRQMQLKNVSVALEFLDRDSIKLVSIDSKATVDGNLKLILGLVWTLILRYSISTPV 66
++ R +L+NV +AL++L R +KLV+I + DGN KL LGL+WT+IL + IS
Sbjct: 124 EKGRMRFHRLQNVQIALDYLKRRQVKLVNIRNDDITDGNPKLTLGLIWTIILHFQISDIH 183
Query: 67 CEDEGDDDAKKQMRKQRLLGWIQNKVP-YLPI--TNFSQNWQDSKALRALVDSCAP 119
E +D K+RLL W Q Y I NF+ W+D K A++ P
Sbjct: 184 VTGESED----MSAKERLLLWTQQATEGYAGIRCENFTTCWRDGKLFNAIIHKYRP 235
>gi|221316618 dystonin isoform 2 [Homo sapiens]
Length = 5675
Score = 70.9 bits (172), Expect = 4e-13
Identities = 43/116 (37%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 7 QRPTFRQMQLKNVSVALEFLDRDSIKLVSIDSKATVDGNLKLILGLVWTLILRYSISTPV 66
++ R +L+NV +AL++L R +KLV+I + DGN KL LGL+WT+IL + IS
Sbjct: 262 EKGRMRFHRLQNVQIALDYLKRRQVKLVNIRNDDITDGNPKLTLGLIWTIILHFQISDIH 321
Query: 67 CEDEGDDDAKKQMRKQRLLGWIQNKVP-YLPI--TNFSQNWQDSKALRALVDSCAP 119
E +D K+RLL W Q Y I NF+ W+D K A++ P
Sbjct: 322 VTGESED----MSAKERLLLWTQQATEGYAGIRCENFTTCWRDGKLFNAIIHKYRP 373
>gi|34577047 dystonin isoform 1 [Homo sapiens]
Length = 5497
Score = 70.9 bits (172), Expect = 4e-13
Identities = 43/116 (37%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 7 QRPTFRQMQLKNVSVALEFLDRDSIKLVSIDSKATVDGNLKLILGLVWTLILRYSISTPV 66
++ R +L+NV +AL++L R +KLV+I + DGN KL LGL+WT+IL + IS
Sbjct: 84 EKGRMRFHRLQNVQIALDYLKRRQVKLVNIRNDDITDGNPKLTLGLIWTIILHFQISDIH 143
Query: 67 CEDEGDDDAKKQMRKQRLLGWIQNKVP-YLPI--TNFSQNWQDSKALRALVDSCAP 119
E +D K+RLL W Q Y I NF+ W+D K A++ P
Sbjct: 144 VTGESED----MSAKERLLLWTQQATEGYAGIRCENFTTCWRDGKLFNAIIHKYRP 195
>gi|169218211 PREDICTED: similar to plectin 1, partial [Homo
sapiens]
Length = 1369
Score = 68.6 bits (166), Expect = 2e-12
Identities = 39/116 (33%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 7 QRPTFRQMQLKNVSVALEFLDRDSIKLVSIDSKATVDGNLKLILGLVWTLILRYSISTPV 66
++ R +L+NV +AL++L +KLV+I + DGN KL LGL+WT+IL + IS
Sbjct: 224 EKGRMRFHKLQNVQIALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQISDIQ 283
Query: 67 CEDEGDDDAKKQMRKQRLLGWIQNKV---PYLPITNFSQNWQDSKALRALVDSCAP 119
+ +D K++LL W Q V L NF+ +W+D + A++ P
Sbjct: 284 VSGQSED----MTAKEKLLLWSQRMVEGYQGLRCDNFTSSWRDGRLFNAIIHRHKP 335
>gi|41322923 plectin 1 isoform 11 [Homo sapiens]
Length = 4547
Score = 68.6 bits (166), Expect = 2e-12
Identities = 39/116 (33%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 7 QRPTFRQMQLKNVSVALEFLDRDSIKLVSIDSKATVDGNLKLILGLVWTLILRYSISTPV 66
++ R +L+NV +AL++L +KLV+I + DGN KL LGL+WT+IL + IS
Sbjct: 91 EKGRMRFHKLQNVQIALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQISDIQ 150
Query: 67 CEDEGDDDAKKQMRKQRLLGWIQNKV---PYLPITNFSQNWQDSKALRALVDSCAP 119
+ +D K++LL W Q V L NF+ +W+D + A++ P
Sbjct: 151 VSGQSED----MTAKEKLLLWSQRMVEGYQGLRCDNFTSSWRDGRLFNAIIHRHKP 202
>gi|41322914 plectin 1 isoform 10 [Homo sapiens]
Length = 4551
Score = 68.6 bits (166), Expect = 2e-12
Identities = 39/116 (33%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 7 QRPTFRQMQLKNVSVALEFLDRDSIKLVSIDSKATVDGNLKLILGLVWTLILRYSISTPV 66
++ R +L+NV +AL++L +KLV+I + DGN KL LGL+WT+IL + IS
Sbjct: 95 EKGRMRFHKLQNVQIALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQISDIQ 154
Query: 67 CEDEGDDDAKKQMRKQRLLGWIQNKV---PYLPITNFSQNWQDSKALRALVDSCAP 119
+ +D K++LL W Q V L NF+ +W+D + A++ P
Sbjct: 155 VSGQSED----MTAKEKLLLWSQRMVEGYQGLRCDNFTSSWRDGRLFNAIIHRHKP 206
>gi|41322919 plectin 1 isoform 8 [Homo sapiens]
Length = 4547
Score = 68.6 bits (166), Expect = 2e-12
Identities = 39/116 (33%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 7 QRPTFRQMQLKNVSVALEFLDRDSIKLVSIDSKATVDGNLKLILGLVWTLILRYSISTPV 66
++ R +L+NV +AL++L +KLV+I + DGN KL LGL+WT+IL + IS
Sbjct: 91 EKGRMRFHKLQNVQIALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQISDIQ 150
Query: 67 CEDEGDDDAKKQMRKQRLLGWIQNKV---PYLPITNFSQNWQDSKALRALVDSCAP 119
+ +D K++LL W Q V L NF+ +W+D + A++ P
Sbjct: 151 VSGQSED----MTAKEKLLLWSQRMVEGYQGLRCDNFTSSWRDGRLFNAIIHRHKP 202
>gi|41322910 plectin 1 isoform 7 [Homo sapiens]
Length = 4515
Score = 68.6 bits (166), Expect = 2e-12
Identities = 39/116 (33%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 7 QRPTFRQMQLKNVSVALEFLDRDSIKLVSIDSKATVDGNLKLILGLVWTLILRYSISTPV 66
++ R +L+NV +AL++L +KLV+I + DGN KL LGL+WT+IL + IS
Sbjct: 59 EKGRMRFHKLQNVQIALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQISDIQ 118
Query: 67 CEDEGDDDAKKQMRKQRLLGWIQNKV---PYLPITNFSQNWQDSKALRALVDSCAP 119
+ +D K++LL W Q V L NF+ +W+D + A++ P
Sbjct: 119 VSGQSED----MTAKEKLLLWSQRMVEGYQGLRCDNFTSSWRDGRLFNAIIHRHKP 170
>gi|41322916 plectin 1 isoform 6 [Homo sapiens]
Length = 4684
Score = 68.6 bits (166), Expect = 2e-12
Identities = 39/116 (33%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 7 QRPTFRQMQLKNVSVALEFLDRDSIKLVSIDSKATVDGNLKLILGLVWTLILRYSISTPV 66
++ R +L+NV +AL++L +KLV+I + DGN KL LGL+WT+IL + IS
Sbjct: 228 EKGRMRFHKLQNVQIALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQISDIQ 287
Query: 67 CEDEGDDDAKKQMRKQRLLGWIQNKV---PYLPITNFSQNWQDSKALRALVDSCAP 119
+ +D K++LL W Q V L NF+ +W+D + A++ P
Sbjct: 288 VSGQSED----MTAKEKLLLWSQRMVEGYQGLRCDNFTSSWRDGRLFNAIIHRHKP 339
>gi|41322908 plectin 1 isoform 3 [Homo sapiens]
Length = 4525
Score = 68.6 bits (166), Expect = 2e-12
Identities = 39/116 (33%), Positives = 62/116 (53%), Gaps = 7/116 (6%)
Query: 7 QRPTFRQMQLKNVSVALEFLDRDSIKLVSIDSKATVDGNLKLILGLVWTLILRYSISTPV 66
++ R +L+NV +AL++L +KLV+I + DGN KL LGL+WT+IL + IS
Sbjct: 69 EKGRMRFHKLQNVQIALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQISDIQ 128
Query: 67 CEDEGDDDAKKQMRKQRLLGWIQNKV---PYLPITNFSQNWQDSKALRALVDSCAP 119
+ +D K++LL W Q V L NF+ +W+D + A++ P
Sbjct: 129 VSGQSED----MTAKEKLLLWSQRMVEGYQGLRCDNFTSSWRDGRLFNAIIHRHKP 180
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.135 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,794,540
Number of Sequences: 37866
Number of extensions: 319699
Number of successful extensions: 1412
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 1254
Number of HSP's gapped (non-prelim): 174
length of query: 158
length of database: 18,247,518
effective HSP length: 94
effective length of query: 64
effective length of database: 14,688,114
effective search space: 940039296
effective search space used: 940039296
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.