Guide to the Human Genome
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Name: FLNB Sequence: fasta or formatted (2602aa) NCBI GI: 105990514
Description:

filamin B, beta (actin binding protein 278)

Referenced in:

Cytoskeleton
LIM Domain Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0        182           2
 C cysteine            1.5         38           1
 D aspartate           6.0        156           3
 E glutamate           6.3        164           2
 F phenylalanine       3.3         86           2
 G glycine            10.6        277           2
 H histidine           2.2         58           2
 I isoleucine          5.1        134           2
 K lysine              6.6        173           2
 L leucine             5.4        140           2
 M methionine          1.4         37           1
 N asparagine          3.4         88           2
 P proline             7.7        200           2
 Q glutamine           2.8         72           2
 R arginine            3.2         83           2
 S serine              6.8        178           2
 T threonine           6.5        168           2
 V valine             10.1        263           2
 W tryptophan          0.6         16           1
 Y tyrosine            3.4         89           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   filamin B, beta (actin binding protein 278) 
FLNA                  0.718   filamin A, alpha isoform 1 
FLNA                  0.716   filamin A, alpha isoform 2 
FLNC                  0.604   gamma filamin isoform a 
FLNC                  0.601   gamma filamin isoform b 
LOC100291695          0.037   PREDICTED: similar to spectrin, beta, non-erythrocy...
ACTN3                 0.025   actinin, alpha 3 
ACTN2                 0.025   actinin, alpha 2 
ACTN4                 0.025   actinin, alpha 4 
ACTN1                 0.024   actinin, alpha 1 isoform c 
ACTN1                 0.024   actinin, alpha 1 isoform a 
ACTN1                 0.024   actinin, alpha 1 isoform b 
MACF1                 0.023   microfilament and actin filament cross-linker protei...
SPTBN1                0.022   spectrin, beta, non-erythrocytic 1 isoform 1 
SPTBN1                0.022   spectrin, beta, non-erythrocytic 1 isoform 2 
PLEC1                 0.022   plectin 1 isoform 11 
PLEC1                 0.022   plectin 1 isoform 10 
PLEC1                 0.022   plectin 1 isoform 8 
PLEC1                 0.022   plectin 1 isoform 7 
PLEC1                 0.022   plectin 1 isoform 6 
PLEC1                 0.022   plectin 1 isoform 3 
PLEC1                 0.022   plectin 1 isoform 2 
PLEC1                 0.022   plectin 1 isoform 1 
DST                   0.022   dystonin isoform 4 
DST                   0.022   dystonin isoform 3 
DST                   0.022   dystonin isoform 2 
DST                   0.022   dystonin isoform 1 
SPTBN2                0.021   spectrin, beta, non-erythrocytic 2 
SPTBN4                0.021   spectrin, beta, non-erythrocytic 4 isoform sigma1 [...
SPTB                  0.021   spectrin beta isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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