Guide to the Human Genome
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Name: FAM160A2 Sequence: fasta or formatted (972aa) NCBI GI: 149393138
Description:

hypothetical protein LOC84067 isoform 2

Referenced in:

Additional Genes in Development

Other entries for this name:
alt prot [986aa] hypothetical protein LOC84067 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5         83           2
 C cysteine            2.0         19           2
 D aspartate           3.1         30           2
 E glutamate           7.5         73           4
 F phenylalanine       3.3         32           2
 G glycine             8.2         80           2
 H histidine           2.4         23           2
 I isoleucine          1.7         17           1
 K lysine              2.4         23           2
 L leucine            15.1        147           4
 M methionine          1.6         16           1
 N asparagine          2.5         24           2
 P proline            10.0         97           3
 Q glutamine           3.7         36           2
 R arginine            7.4         72           2
 S serine              8.2         80           3
 T threonine           3.6         35           2
 V valine              6.2         60           2
 W tryptophan          1.0         10           1
 Y tyrosine            1.5         15           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC84067 isoform 2 
FAM160A2              0.995   hypothetical protein LOC84067 isoform 1 
FAM160A1              0.250   hypothetical protein LOC729830 
FAM160B2              0.028   retinoic acid induced 16 
FAM160B1              0.025   hypothetical protein LOC57700 isoform b 
FAM160B1              0.025   hypothetical protein LOC57700 isoform a 
SRRM2                 0.011   splicing coactivator subunit SRm300 
PTPN23                0.011   protein tyrosine phosphatase, non-receptor type 23 [...
OGFR                  0.010   opioid growth factor receptor 
SCAF1                 0.009   SR-related CTD-associated factor 1 
SYNJ1                 0.009   synaptojanin 1 isoform c 
EIF4G1                0.009   eukaryotic translation initiation factor 4 gamma, 1 ...
EIF4G1                0.009   eukaryotic translation initiation factor 4 gamma, 1 ...
EIF4G1                0.009   eukaryotic translation initiation factor 4 gamma, 1 ...
EIF4G1                0.009   eukaryotic translation initiation factor 4 gamma, 1 ...
EIF4G1                0.009   eukaryotic translation initiation factor 4 gamma, 1 ...
ZNF219                0.009   zinc finger protein 219 
ZNF219                0.009   zinc finger protein 219 
ZNF219                0.009   zinc finger protein 219 
VWA5B2                0.008   von Willebrand factor A domain containing 5B2 [Homo...
KRBA1                 0.008   KRAB A domain containing 1 
SYNJ1                 0.008   synaptojanin 1 isoform a 
KIAA1543              0.008   NEZHA isoform 2 
KIAA1543              0.008   NEZHA isoform 1 
LOC100292122          0.008   PREDICTED: hypothetical protein XP_002345138 
LOC100127891          0.008   PREDICTED: similar to hCG2042508 
LOC100286986          0.008   PREDICTED: hypothetical protein XP_002344191 
LOC100127891          0.008   PREDICTED: similar to hCG2042508 
LOC100127891          0.008   PREDICTED: similar to hCG2042508 
COL9A3                0.008   alpha 3 type IX collagen 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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