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Search of human proteins with 239755579
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755579 PREDICTED: hypothetical protein [Homo sapiens]
(208 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755579 PREDICTED: hypothetical protein [Homo sapiens] 437 e-123
gi|239750107 PREDICTED: hypothetical protein XP_002347294 [Homo ... 437 e-123
gi|239744411 PREDICTED: hypothetical protein XP_002343156 [Homo ... 437 e-123
gi|116284392 mucin 2 precursor [Homo sapiens] 32 0.29
gi|239749951 PREDICTED: similar to mucin 2 [Homo sapiens] 32 0.29
gi|119709834 castor homolog 1, zinc finger isoform a [Homo sapiens] 32 0.50
gi|222136611 poliovirus receptor-related 4 [Homo sapiens] 32 0.50
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 31 0.65
gi|24308215 retrotransposon gag domain containing 1 [Homo sapiens] 31 0.65
gi|120953251 neuron navigator 3 [Homo sapiens] 31 0.65
gi|153792112 PRAME family member 20 [Homo sapiens] 31 0.65
gi|153945800 PRAME family member 21 [Homo sapiens] 31 0.65
gi|122937341 hypothetical protein LOC388960 [Homo sapiens] 31 0.85
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 31 0.85
gi|4507831 Unc-51-like kinase 1 [Homo sapiens] 30 1.1
gi|239747673 PREDICTED: doublecortin domain-containing protein E... 30 1.1
gi|239741542 PREDICTED: doublecortin domain-containing protein E... 30 1.1
gi|239755778 PREDICTED: mucin 19, oligomeric [Homo sapiens] 30 1.5
gi|239750280 PREDICTED: mucin 19, oligomeric [Homo sapiens] 30 1.5
gi|239744589 PREDICTED: mucin 19 [Homo sapiens] 30 1.5
gi|115511024 lipase maturation factor 1 [Homo sapiens] 30 1.9
gi|239752280 PREDICTED: similar to family with sequence similari... 29 2.5
gi|148237498 deltex 4 homolog [Homo sapiens] 29 2.5
gi|210032463 family with sequence similarity 48, member B2 [Homo... 29 2.5
gi|45387951 transmembrane protein 108 [Homo sapiens] 29 2.5
gi|210147493 transmembrane protein 108 [Homo sapiens] 29 2.5
gi|146134388 YLP motif containing 1 [Homo sapiens] 29 2.5
gi|239743293 PREDICTED: mucin 12 [Homo sapiens] 29 3.2
gi|150170670 piccolo isoform 2 [Homo sapiens] 29 3.2
gi|150378539 piccolo isoform 1 [Homo sapiens] 29 3.2
>gi|239755579 PREDICTED: hypothetical protein [Homo sapiens]
Length = 208
Score = 437 bits (1125), Expect = e-123
Identities = 208/208 (100%), Positives = 208/208 (100%)
Query: 1 MRRAMAFTMSVWRSMTITAAVPRPVCACTSASKSISTVSHTDLGISGVDEPPGITARRLS 60
MRRAMAFTMSVWRSMTITAAVPRPVCACTSASKSISTVSHTDLGISGVDEPPGITARRLS
Sbjct: 1 MRRAMAFTMSVWRSMTITAAVPRPVCACTSASKSISTVSHTDLGISGVDEPPGITARRLS 60
Query: 61 QPPVTPPGAPTCFSISSFKGTDISSSTVQGWLTWPEMLNSLVPELRSLPKPANQVPPRRQ 120
QPPVTPPGAPTCFSISSFKGTDISSSTVQGWLTWPEMLNSLVPELRSLPKPANQVPPRRQ
Sbjct: 61 QPPVTPPGAPTCFSISSFKGTDISSSTVQGWLTWPEMLNSLVPELRSLPKPANQVPPRRQ 120
Query: 121 IVGDTATVSTLATVVGQPNTPSGKWEENWWLLGGGASFLAGRCVPGSCTHGRAPALISPY 180
IVGDTATVSTLATVVGQPNTPSGKWEENWWLLGGGASFLAGRCVPGSCTHGRAPALISPY
Sbjct: 121 IVGDTATVSTLATVVGQPNTPSGKWEENWWLLGGGASFLAGRCVPGSCTHGRAPALISPY 180
Query: 181 HSYPCWTPNSRDAHCLVHPMPLASEQAL 208
HSYPCWTPNSRDAHCLVHPMPLASEQAL
Sbjct: 181 HSYPCWTPNSRDAHCLVHPMPLASEQAL 208
>gi|239750107 PREDICTED: hypothetical protein XP_002347294 [Homo
sapiens]
Length = 208
Score = 437 bits (1125), Expect = e-123
Identities = 208/208 (100%), Positives = 208/208 (100%)
Query: 1 MRRAMAFTMSVWRSMTITAAVPRPVCACTSASKSISTVSHTDLGISGVDEPPGITARRLS 60
MRRAMAFTMSVWRSMTITAAVPRPVCACTSASKSISTVSHTDLGISGVDEPPGITARRLS
Sbjct: 1 MRRAMAFTMSVWRSMTITAAVPRPVCACTSASKSISTVSHTDLGISGVDEPPGITARRLS 60
Query: 61 QPPVTPPGAPTCFSISSFKGTDISSSTVQGWLTWPEMLNSLVPELRSLPKPANQVPPRRQ 120
QPPVTPPGAPTCFSISSFKGTDISSSTVQGWLTWPEMLNSLVPELRSLPKPANQVPPRRQ
Sbjct: 61 QPPVTPPGAPTCFSISSFKGTDISSSTVQGWLTWPEMLNSLVPELRSLPKPANQVPPRRQ 120
Query: 121 IVGDTATVSTLATVVGQPNTPSGKWEENWWLLGGGASFLAGRCVPGSCTHGRAPALISPY 180
IVGDTATVSTLATVVGQPNTPSGKWEENWWLLGGGASFLAGRCVPGSCTHGRAPALISPY
Sbjct: 121 IVGDTATVSTLATVVGQPNTPSGKWEENWWLLGGGASFLAGRCVPGSCTHGRAPALISPY 180
Query: 181 HSYPCWTPNSRDAHCLVHPMPLASEQAL 208
HSYPCWTPNSRDAHCLVHPMPLASEQAL
Sbjct: 181 HSYPCWTPNSRDAHCLVHPMPLASEQAL 208
>gi|239744411 PREDICTED: hypothetical protein XP_002343156 [Homo
sapiens]
Length = 208
Score = 437 bits (1125), Expect = e-123
Identities = 208/208 (100%), Positives = 208/208 (100%)
Query: 1 MRRAMAFTMSVWRSMTITAAVPRPVCACTSASKSISTVSHTDLGISGVDEPPGITARRLS 60
MRRAMAFTMSVWRSMTITAAVPRPVCACTSASKSISTVSHTDLGISGVDEPPGITARRLS
Sbjct: 1 MRRAMAFTMSVWRSMTITAAVPRPVCACTSASKSISTVSHTDLGISGVDEPPGITARRLS 60
Query: 61 QPPVTPPGAPTCFSISSFKGTDISSSTVQGWLTWPEMLNSLVPELRSLPKPANQVPPRRQ 120
QPPVTPPGAPTCFSISSFKGTDISSSTVQGWLTWPEMLNSLVPELRSLPKPANQVPPRRQ
Sbjct: 61 QPPVTPPGAPTCFSISSFKGTDISSSTVQGWLTWPEMLNSLVPELRSLPKPANQVPPRRQ 120
Query: 121 IVGDTATVSTLATVVGQPNTPSGKWEENWWLLGGGASFLAGRCVPGSCTHGRAPALISPY 180
IVGDTATVSTLATVVGQPNTPSGKWEENWWLLGGGASFLAGRCVPGSCTHGRAPALISPY
Sbjct: 121 IVGDTATVSTLATVVGQPNTPSGKWEENWWLLGGGASFLAGRCVPGSCTHGRAPALISPY 180
Query: 181 HSYPCWTPNSRDAHCLVHPMPLASEQAL 208
HSYPCWTPNSRDAHCLVHPMPLASEQAL
Sbjct: 181 HSYPCWTPNSRDAHCLVHPMPLASEQAL 208
>gi|116284392 mucin 2 precursor [Homo sapiens]
Length = 5179
Score = 32.3 bits (72), Expect = 0.29
Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Query: 14 SMTITAAVPRPVCACTSASKSISTVSHTDLGISGVDEPPGITARRLSQPPVTPPGAPTCF 73
S T+ + +P + ++A S T T G + PP T + PP TP T
Sbjct: 4234 STTLLSTLPPAIEMTSTAPPSTPTAPTTTSGGHTLSPPPSTT----TSPPGTPTRGTTTG 4289
Query: 74 SISSFKGTDISSSTVQGWLTWPEMLNS 100
S S+ + + ++T W P L++
Sbjct: 4290 SSSAPTPSTVQTTTTSAWTPTPTPLST 4316
>gi|239749951 PREDICTED: similar to mucin 2 [Homo sapiens]
Length = 2639
Score = 32.3 bits (72), Expect = 0.29
Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Query: 14 SMTITAAVPRPVCACTSASKSISTVSHTDLGISGVDEPPGITARRLSQPPVTPPGAPTCF 73
S T+ + +P + ++A S T T G + PP T + PP TP T
Sbjct: 1694 STTLLSTLPPAIEMTSTAPPSTPTAPTTTSGGHTLSPPPSTT----TSPPGTPTRGTTTG 1749
Query: 74 SISSFKGTDISSSTVQGWLTWPEMLNS 100
S S+ + + ++T W P L++
Sbjct: 1750 SSSAPTPSTVQTTTTSAWTPTPTPLST 1776
>gi|119709834 castor homolog 1, zinc finger isoform a [Homo sapiens]
Length = 1759
Score = 31.6 bits (70), Expect = 0.50
Identities = 34/154 (22%), Positives = 61/154 (39%), Gaps = 34/154 (22%)
Query: 60 SQPPVTPPGAP----TCFSISSFKGTDISSSTVQGW---LTWPEMLNSLVPELRSLPKPA 112
++PP+ P P T ++SS +G S ++V L W + L S +P++ +P
Sbjct: 1078 TKPPMAPSSPPVPPVTTATVSSLEGPAPSPASVPSTPTLLAWKQ-LASTIPQMPQIPASV 1136
Query: 113 NQVPPRRQIVGDTATVSTLATVVGQPNTPSG--KWEENWWLLGGGASFLAG---RCVPGS 167
+P + ++T + +P G +++EN L + C+ G+
Sbjct: 1137 PHLP--------ASPLATTSLENAKPQVKPGFLQFQENDPCLATDCKYANKFHFHCLFGN 1188
Query: 168 CTHGRAPALISPYHSYPCWTPNSRDAHCLVHPMP 201
C Y C T ++HCL H P
Sbjct: 1189 C-------------KYVCKTSGKAESHCLDHINP 1209
>gi|222136611 poliovirus receptor-related 4 [Homo sapiens]
Length = 510
Score = 31.6 bits (70), Expect = 0.50
Identities = 31/112 (27%), Positives = 44/112 (39%), Gaps = 19/112 (16%)
Query: 98 LNSLVPELRSL-PKPANQVPPRRQIVGDTATVSTLATVVGQPNTPSGKWEENWWLLGGGA 156
L LVP L SL P PA + G T++ T G P PS W+
Sbjct: 143 LRVLVPPLPSLNPGPALEE-------GQGLTLAASCTAEGSP-APSVTWDTE-------- 186
Query: 157 SFLAGRCVPGSCTHGRAPALISPYHSYPCWTPNSRDAHCLVHPMPLASEQAL 208
+ G S H R+ A+ S +H P + N + C+V L +Q +
Sbjct: 187 --VKGTTSSRSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRI 236
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 31.2 bits (69), Expect = 0.65
Identities = 17/47 (36%), Positives = 21/47 (44%)
Query: 44 GISGVDEPPGITARRLSQPPVTPPGAPTCFSISSFKGTDISSSTVQG 90
G GV PGIT P PPGAP F + G + + V+G
Sbjct: 507 GPPGVPGSPGITGPPGPPGPPGPPGAPGAFDETGIAGLHLPNGGVEG 553
>gi|24308215 retrotransposon gag domain containing 1 [Homo sapiens]
Length = 1388
Score = 31.2 bits (69), Expect = 0.65
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 6/94 (6%)
Query: 13 RSMTITAAVPRPVCACTSASKSISTVSHTDLGISGVDEPPGITARRLSQPPVTPPGAPTC 72
++MT A + A TS S S + T G+ + + + LS+P +TP + T
Sbjct: 568 KAMTSGAMSTPLMTAQTSGSTSTLLMRDTASGVMSCPQMRSLASGALSKPLMTPKASGTM 627
Query: 73 F------SISSFKGTDISSSTVQGWLTWPEMLNS 100
F + S T + TV G L+ P+M ++
Sbjct: 628 FTEKMTTTASEAMPTLLMRDTVSGALSMPQMTDT 661
>gi|120953251 neuron navigator 3 [Homo sapiens]
Length = 2363
Score = 31.2 bits (69), Expect = 0.65
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 79 KGTDISSSTVQGWLTWPEMLNSLVPELRSLPKPANQVPPRRQIVGDTATVS----TLATV 134
K + I+S +G T SL+P +PKP ++VP +Q + +T S T
Sbjct: 498 KTSKIASLIPKGSKTTAAKKESLIPSSSGIPKPGSKVPTVKQTISPGSTASKESEKFRTT 557
Query: 135 VGQPNTPSGK 144
G P+ K
Sbjct: 558 KGSPSQSLSK 567
>gi|153792112 PRAME family member 20 [Homo sapiens]
Length = 475
Score = 31.2 bits (69), Expect = 0.65
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
Query: 33 KSISTVSHTDLGISGVDEPPGITARRLSQPPVTPPGAPTCFSIS--SFKGTDISSSTVQG 90
K +T+ + DL G+ + SQ P CF ++ SF+G IS++T++
Sbjct: 346 KVAATLEYLDLDDCGIVD---------SQVNAILPALSRCFELTTFSFRGNPISTATLEN 396
Query: 91 WLTWPEMLNSLVPELRSLPKPANQV 115
L LN+L EL P+ + V
Sbjct: 397 LLCHTIRLNNLCLELYPAPRESYDV 421
>gi|153945800 PRAME family member 21 [Homo sapiens]
Length = 475
Score = 31.2 bits (69), Expect = 0.65
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
Query: 33 KSISTVSHTDLGISGVDEPPGITARRLSQPPVTPPGAPTCFSIS--SFKGTDISSSTVQG 90
K +T+ + DL G+ + SQ P CF ++ SF+G IS++T++
Sbjct: 346 KVAATLEYLDLDDCGIVD---------SQVNAILPALSRCFELTTFSFRGNPISTATLEN 396
Query: 91 WLTWPEMLNSLVPELRSLPKPANQV 115
L LN+L EL P+ + V
Sbjct: 397 LLCHTIRLNNLCLELYPAPRESYDV 421
>gi|122937341 hypothetical protein LOC388960 [Homo sapiens]
Length = 922
Score = 30.8 bits (68), Expect = 0.85
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Query: 23 RPVCACTSASKSI--STVSHTDLGISGVDEPPGITARRLSQPPVTPPGAPTCFSISSFKG 80
RP ++ S ++ S + T+ ++G P + + +QP P PT ++ +
Sbjct: 753 RPDSTNSAQSNAVNPSRPAPTNTSLTGPATPAQPISAKATQPSSANPTQPTVPQSAASRP 812
Query: 81 TDISSSTVQGWLTWPEMLNSLVPELRSLPKPANQ 114
+ +S+ P +++ V LRSLPKP NQ
Sbjct: 813 SAYKTSSCSSLQREP--VSTAVTSLRSLPKPQNQ 844
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 [Homo
sapiens]
Length = 2231
Score = 30.8 bits (68), Expect = 0.85
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Query: 29 TSASKSISTVSHTDLGISGVDEPPGITARRLSQPPVTPPGAPTCFSISSFKGTDISSSTV 88
T +S S S++ GIS P + PV P +P+ SISSF G + S +
Sbjct: 966 TPQPESKSKDSYSSQGISQPPTPGNL--------PVPSPMSPSSASISSFHGDESDSISS 1017
Query: 89 QGWLTWP 95
GW P
Sbjct: 1018 PGWPKTP 1024
>gi|4507831 Unc-51-like kinase 1 [Homo sapiens]
Length = 1050
Score = 30.4 bits (67), Expect = 1.1
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 123 GDTATVSTLATVVGQP---NTPSGKWEENWWLLG--GGASFLAGRCVPGSCTHGRAPALI 177
G T++ S + VG P +TP + G G AS A VPG C+ AP L
Sbjct: 744 GGTSSPSPVVFTVGSPPSGSTPPQGPRTRMFSAGPTGSASSSARHLVPGPCSEAPAPELP 803
Query: 178 SPYH 181
+P H
Sbjct: 804 APGH 807
>gi|239747673 PREDICTED: doublecortin domain-containing protein
ENSP00000382097-like [Homo sapiens]
Length = 714
Score = 30.4 bits (67), Expect = 1.1
Identities = 25/93 (26%), Positives = 32/93 (34%), Gaps = 13/93 (13%)
Query: 22 PRPVCACTSASKSISTVSHTDLGISGVDEPPGITARRLSQPPVTPPGAPTCFSISSFKGT 81
P P+ S+S S L PPG S P P +P+C S
Sbjct: 92 PEPLALAARRSQSPRVASTRSL------RPPGSPVPSPSSPRPVPVPSPSCAS------- 138
Query: 82 DISSSTVQGWLTWPEMLNSLVPELRSLPKPANQ 114
S V G W + P RSL PA++
Sbjct: 139 GWSGPPVGGARAWARLCRRRCPRCRSLSAPASE 171
>gi|239741542 PREDICTED: doublecortin domain-containing protein
ENSP00000382097-like [Homo sapiens]
Length = 510
Score = 30.4 bits (67), Expect = 1.1
Identities = 25/93 (26%), Positives = 32/93 (34%), Gaps = 13/93 (13%)
Query: 22 PRPVCACTSASKSISTVSHTDLGISGVDEPPGITARRLSQPPVTPPGAPTCFSISSFKGT 81
P P+ S+S S L PPG S P P +P+C S
Sbjct: 92 PEPLALAARRSQSPRVASTRSL------RPPGSPVPSPSSPRPVPVPSPSCAS------- 138
Query: 82 DISSSTVQGWLTWPEMLNSLVPELRSLPKPANQ 114
S V G W + P RSL PA++
Sbjct: 139 GWSGPPVGGARAWARLCRRRCPRCRSLSAPASE 171
>gi|239755778 PREDICTED: mucin 19, oligomeric [Homo sapiens]
Length = 598
Score = 30.0 bits (66), Expect = 1.5
Identities = 33/153 (21%), Positives = 59/153 (38%), Gaps = 31/153 (20%)
Query: 29 TSASKSISTVSHTDLGISGVDEPPGITARRLSQPPVTPPGAPTCFSISSFKGTDISSSTV 88
TS+ + + VS GI+G+ E + + T PG PT + S T + ++
Sbjct: 272 TSSQEGTTVVSS---GITGIPETSISGPSKEASDKTTAPGPPTTVTAS----TGVKETSE 324
Query: 89 QGWLTWPEMLNSLVPELRSLPKPANQVPPRRQIVGDTATVSTLATV---------VGQPN 139
G T ++ + VP + +P V R++ + T LA++ +G+
Sbjct: 325 TGVQTGSTLVTAGVPTRPQVSQPETTVVATREVETENKT-ECLASLPPAPVCHGPLGEEK 383
Query: 140 TPSGKWEENWWLLGGGASFLAGRCVPGSCTHGR 172
+P W N C G+CT +
Sbjct: 384 SPGDIWTAN--------------CHRGTCTDAK 402
>gi|239750280 PREDICTED: mucin 19, oligomeric [Homo sapiens]
Length = 598
Score = 30.0 bits (66), Expect = 1.5
Identities = 33/153 (21%), Positives = 59/153 (38%), Gaps = 31/153 (20%)
Query: 29 TSASKSISTVSHTDLGISGVDEPPGITARRLSQPPVTPPGAPTCFSISSFKGTDISSSTV 88
TS+ + + VS GI+G+ E + + T PG PT + S T + ++
Sbjct: 272 TSSQEGTTVVSS---GITGIPETSISGPSKEASDKTTAPGPPTTVTAS----TGVKETSE 324
Query: 89 QGWLTWPEMLNSLVPELRSLPKPANQVPPRRQIVGDTATVSTLATV---------VGQPN 139
G T ++ + VP + +P V R++ + T LA++ +G+
Sbjct: 325 TGVQTGSTLVTAGVPTRPQVSQPETTVVATREVETENKT-ECLASLPPAPVCHGPLGEEK 383
Query: 140 TPSGKWEENWWLLGGGASFLAGRCVPGSCTHGR 172
+P W N C G+CT +
Sbjct: 384 SPGDIWTAN--------------CHRGTCTDAK 402
>gi|239744589 PREDICTED: mucin 19 [Homo sapiens]
Length = 598
Score = 30.0 bits (66), Expect = 1.5
Identities = 33/153 (21%), Positives = 59/153 (38%), Gaps = 31/153 (20%)
Query: 29 TSASKSISTVSHTDLGISGVDEPPGITARRLSQPPVTPPGAPTCFSISSFKGTDISSSTV 88
TS+ + + VS GI+G+ E + + T PG PT + S T + ++
Sbjct: 272 TSSQEGTTVVSS---GITGIPETSISGPSKEASDKTTAPGPPTTVTAS----TGVKETSE 324
Query: 89 QGWLTWPEMLNSLVPELRSLPKPANQVPPRRQIVGDTATVSTLATV---------VGQPN 139
G T ++ + VP + +P V R++ + T LA++ +G+
Sbjct: 325 TGVQTGSTLVTAGVPTRPQVSQPETTVVATREVETENKT-ECLASLPPAPVCHGPLGEEK 383
Query: 140 TPSGKWEENWWLLGGGASFLAGRCVPGSCTHGR 172
+P W N C G+CT +
Sbjct: 384 SPGDIWTAN--------------CHRGTCTDAK 402
>gi|115511024 lipase maturation factor 1 [Homo sapiens]
Length = 567
Score = 29.6 bits (65), Expect = 1.9
Identities = 29/114 (25%), Positives = 41/114 (35%), Gaps = 20/114 (17%)
Query: 79 KGTDISSSTVQGWLTWPEMLNSLVPE------LRSLPKPANQVPPRRQIVGDTATVSTLA 132
+ ++S + WL+ P +LN L SL N I + A V
Sbjct: 365 RAANVSLGVLLAWLSVPVVLNLLSSRQVMNTHFNSL-HIVNTYGAFGSITKERAEVILQG 423
Query: 133 TVVGQPNTPSGKWEENWWLLGGGASFLAGRCVPGSCTHGRAPALISPYHSYPCW 186
T + P WE+ + +C PG + R P LISPYH W
Sbjct: 424 TASSNASAPDAMWEDYEF-----------KCKPGDPS--RRPCLISPYHYRLDW 464
>gi|239752280 PREDICTED: similar to family with sequence similarity
48, member B2 [Homo sapiens]
Length = 779
Score = 29.3 bits (64), Expect = 2.5
Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 14/99 (14%)
Query: 46 SGVDEPPGITARRLSQP----PVTPPGA-------PTCFSISSFKGT-DISSSTVQGW-- 91
SG P GI+ L P PGA P F +++ +G ++ QGW
Sbjct: 562 SGAPAPAGISGSGLQSSGGPLPDARPGAVQASSPAPLQFFLNTPEGLRPLTLQVPQGWAV 621
Query: 92 LTWPEMLNSLVPELRSLPKPANQVPPRRQIVGDTATVST 130
LT P+ + + L+ L +P PP+ G T +ST
Sbjct: 622 LTGPQQQSHQLVSLQQLQQPTAAHPPQPGPQGSTLGLST 660
>gi|148237498 deltex 4 homolog [Homo sapiens]
Length = 619
Score = 29.3 bits (64), Expect = 2.5
Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 18/100 (18%)
Query: 60 SQPPVTPPGAPTCFSISSFKGTDISSSTVQGWLTWPEMLNSLVP----ELRSLP----KP 111
+ PP++P P C + S K ++ ST G L P ++ P +L LP KP
Sbjct: 182 TSPPMSPCSCPQCVLVMSVKAAVVNGST--GPLQLPVTRKNMPPPGVVKLPPLPGSGAKP 239
Query: 112 ANQVPPRR--------QIVGDTATVSTLATVVGQPNTPSG 143
+ R Q++ A+ T +G P +P G
Sbjct: 240 LDSTGTIRGPLKTAPSQVIRRQASSMPTGTTMGSPASPPG 279
>gi|210032463 family with sequence similarity 48, member B2 [Homo
sapiens]
Length = 817
Score = 29.3 bits (64), Expect = 2.5
Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 14/99 (14%)
Query: 46 SGVDEPPGITARRLSQP----PVTPPGA-------PTCFSISSFKGT-DISSSTVQGW-- 91
SG P GI+ L P PGA P F +++ +G ++ QGW
Sbjct: 600 SGAPAPAGISGSGLQSSGGPLPDARPGAVQASSPAPLQFFLNTPEGLRPLTLQVPQGWAV 659
Query: 92 LTWPEMLNSLVPELRSLPKPANQVPPRRQIVGDTATVST 130
LT P+ + + L+ L +P PP+ G T +ST
Sbjct: 660 LTGPQQQSHQLVSLQQLQQPTAAHPPQPGPQGSTLGLST 698
>gi|45387951 transmembrane protein 108 [Homo sapiens]
Length = 575
Score = 29.3 bits (64), Expect = 2.5
Identities = 24/84 (28%), Positives = 35/84 (41%)
Query: 5 MAFTMSVWRSMTITAAVPRPVCACTSASKSISTVSHTDLGISGVDEPPGITARRLSQPPV 64
+A T++ S + + P P T++SK + +PPG T+R + PP
Sbjct: 100 IAATVTAPHSESSLSTGPAPAAMATTSSKPEGRPRGQAAPTILLTKPPGATSRPTTAPPR 159
Query: 65 TPPGAPTCFSISSFKGTDISSSTV 88
T P SS KG SS V
Sbjct: 160 TTTRRPPRPPGSSRKGAGNSSRPV 183
>gi|210147493 transmembrane protein 108 [Homo sapiens]
Length = 575
Score = 29.3 bits (64), Expect = 2.5
Identities = 24/84 (28%), Positives = 35/84 (41%)
Query: 5 MAFTMSVWRSMTITAAVPRPVCACTSASKSISTVSHTDLGISGVDEPPGITARRLSQPPV 64
+A T++ S + + P P T++SK + +PPG T+R + PP
Sbjct: 100 IAATVTAPHSESSLSTGPAPAAMATTSSKPEGRPRGQAAPTILLTKPPGATSRPTTAPPR 159
Query: 65 TPPGAPTCFSISSFKGTDISSSTV 88
T P SS KG SS V
Sbjct: 160 TTTRRPPRPPGSSRKGAGNSSRPV 183
>gi|146134388 YLP motif containing 1 [Homo sapiens]
Length = 2146
Score = 29.3 bits (64), Expect = 2.5
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 17/88 (19%)
Query: 49 DEPPGITARRLSQPPVTPPGAPTCFSISSFKGTDISSSTVQGWLTWPEMLNSLVPELRSL 108
D PPG+ L PP +PP P + S Q ++ P+ S P S
Sbjct: 133 DGPPGLVPMELESPPESPPVPPGSYMPPS-----------QSYMPPPQPPPSYYPPTSSQ 181
Query: 109 P--KPA----NQVPPRRQIVGDTATVST 130
P PA +Q PP + + T + S+
Sbjct: 182 PYLPPAQPSPSQSPPSQSYLAPTPSYSS 209
>gi|239743293 PREDICTED: mucin 12 [Homo sapiens]
Length = 5478
Score = 28.9 bits (63), Expect = 3.2
Identities = 33/130 (25%), Positives = 48/130 (36%), Gaps = 11/130 (8%)
Query: 24 PVCACTSASKSISTVSHTDLGISGVDEPPG-ITARRLSQPPVTPPGAPTCFSISSFKGTD 82
P TS S ST SH+ G + PG TA Q T +P + F +
Sbjct: 3678 PASTTTSGSSQESTTSHSSSGSTDTALSPGSTTALSFGQESTTFHSSPGSTHTTLFPDST 3737
Query: 83 ISSSTVQGWLTWPEMLNSLVPELRSLPKPANQVPPRRQIVGDTATVST----LATVVGQP 138
SS V+ ++S R+ PA+ P Q G++ T T P
Sbjct: 3738 TSSGIVEA----STRVHSSTGSPRTTLSPASSTSPGLQ--GESTAFQTHPASTHTTPSPP 3791
Query: 139 NTPSGKWEEN 148
+T + EE+
Sbjct: 3792 STATAPVEES 3801
Score = 28.5 bits (62), Expect = 4.2
Identities = 33/130 (25%), Positives = 48/130 (36%), Gaps = 11/130 (8%)
Query: 24 PVCACTSASKSISTVSHTDLGISGVDEPPG-ITARRLSQPPVTPPGAPTCFSISSFKGTD 82
P TS ST SH+ G + PG TA Q T +P + F +
Sbjct: 2595 PASTTTSGPSQESTTSHSSPGSTDTALSPGSTTALSFGQESTTFHSSPGSTHTTLFPDST 2654
Query: 83 ISSSTVQGWLTWPEMLNSLVPELRSLPKPANQVPPRRQIVGDTATVST----LATVVGQP 138
SS V+ ++S R+ PA+ P Q G++ T T T P
Sbjct: 2655 TSSGIVEA----STRVHSSTGSPRTTLSPASSTSPGLQ--GESTTFQTHPASTHTTPSPP 2708
Query: 139 NTPSGKWEEN 148
+T + EE+
Sbjct: 2709 STATAPVEES 2718
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 28.9 bits (63), Expect = 3.2
Identities = 26/102 (25%), Positives = 37/102 (36%), Gaps = 8/102 (7%)
Query: 60 SQPPVTPPGAPTCFSISSFKGTDISSSTVQGWLTWPEMLNSLVPELRSLPKPANQVPPR- 118
S+PP+ P ++ K TDI LT LN + LP P + + P
Sbjct: 2506 SKPPIAPKPVIPQLPTTTQKPTDIHPKPTGLSLTSSMTLNLVTSADYKLPSPTSPLSPHS 2565
Query: 119 -------RQIVGDTATVSTLATVVGQPNTPSGKWEENWWLLG 153
+ + +T V TL + G P S W LG
Sbjct: 2566 NKSSPRFSKSLTETYVVITLPSEPGTPTDSSASQAITSWPLG 2607
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 28.9 bits (63), Expect = 3.2
Identities = 26/102 (25%), Positives = 37/102 (36%), Gaps = 8/102 (7%)
Query: 60 SQPPVTPPGAPTCFSISSFKGTDISSSTVQGWLTWPEMLNSLVPELRSLPKPANQVPPR- 118
S+PP+ P ++ K TDI LT LN + LP P + + P
Sbjct: 2506 SKPPIAPKPVIPQLPTTTQKPTDIHPKPTGLSLTSSMTLNLVTSADYKLPSPTSPLSPHS 2565
Query: 119 -------RQIVGDTATVSTLATVVGQPNTPSGKWEENWWLLG 153
+ + +T V TL + G P S W LG
Sbjct: 2566 NKSSPRFSKSLTETYVVITLPSEPGTPTDSSASQAITSWPLG 2607
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.130 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,888,940
Number of Sequences: 37866
Number of extensions: 529493
Number of successful extensions: 2110
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 2014
Number of HSP's gapped (non-prelim): 148
length of query: 208
length of database: 18,247,518
effective HSP length: 98
effective length of query: 110
effective length of database: 14,536,650
effective search space: 1599031500
effective search space used: 1599031500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.