Guide to the Human Genome
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Search of human proteins with 239755579

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239755579 PREDICTED: hypothetical protein [Homo sapiens]
         (208 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239755579 PREDICTED: hypothetical protein [Homo sapiens]           437   e-123
gi|239750107 PREDICTED: hypothetical protein XP_002347294 [Homo ...   437   e-123
gi|239744411 PREDICTED: hypothetical protein XP_002343156 [Homo ...   437   e-123
gi|116284392 mucin 2 precursor [Homo sapiens]                          32   0.29 
gi|239749951 PREDICTED: similar to mucin 2 [Homo sapiens]              32   0.29 
gi|119709834 castor homolog 1, zinc finger isoform a [Homo sapiens]    32   0.50 
gi|222136611 poliovirus receptor-related 4 [Homo sapiens]              32   0.50 
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]                31   0.65 
gi|24308215 retrotransposon gag domain containing 1 [Homo sapiens]     31   0.65 
gi|120953251 neuron navigator 3 [Homo sapiens]                         31   0.65 
gi|153792112 PRAME family member 20 [Homo sapiens]                     31   0.65 
gi|153945800 PRAME family member 21 [Homo sapiens]                     31   0.65 
gi|122937341 hypothetical protein LOC388960 [Homo sapiens]             31   0.85 
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ...    31   0.85 
gi|4507831 Unc-51-like kinase 1 [Homo sapiens]                         30   1.1  
gi|239747673 PREDICTED: doublecortin domain-containing protein E...    30   1.1  
gi|239741542 PREDICTED: doublecortin domain-containing protein E...    30   1.1  
gi|239755778 PREDICTED: mucin 19, oligomeric [Homo sapiens]            30   1.5  
gi|239750280 PREDICTED: mucin 19, oligomeric [Homo sapiens]            30   1.5  
gi|239744589 PREDICTED: mucin 19 [Homo sapiens]                        30   1.5  
gi|115511024 lipase maturation factor 1 [Homo sapiens]                 30   1.9  
gi|239752280 PREDICTED: similar to family with sequence similari...    29   2.5  
gi|148237498 deltex 4 homolog [Homo sapiens]                           29   2.5  
gi|210032463 family with sequence similarity 48, member B2 [Homo...    29   2.5  
gi|45387951 transmembrane protein 108 [Homo sapiens]                   29   2.5  
gi|210147493 transmembrane protein 108 [Homo sapiens]                  29   2.5  
gi|146134388 YLP motif containing 1 [Homo sapiens]                     29   2.5  
gi|239743293 PREDICTED: mucin 12 [Homo sapiens]                        29   3.2  
gi|150170670 piccolo isoform 2 [Homo sapiens]                          29   3.2  
gi|150378539 piccolo isoform 1 [Homo sapiens]                          29   3.2  

>gi|239755579 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 208

 Score =  437 bits (1125), Expect = e-123
 Identities = 208/208 (100%), Positives = 208/208 (100%)

Query: 1   MRRAMAFTMSVWRSMTITAAVPRPVCACTSASKSISTVSHTDLGISGVDEPPGITARRLS 60
           MRRAMAFTMSVWRSMTITAAVPRPVCACTSASKSISTVSHTDLGISGVDEPPGITARRLS
Sbjct: 1   MRRAMAFTMSVWRSMTITAAVPRPVCACTSASKSISTVSHTDLGISGVDEPPGITARRLS 60

Query: 61  QPPVTPPGAPTCFSISSFKGTDISSSTVQGWLTWPEMLNSLVPELRSLPKPANQVPPRRQ 120
           QPPVTPPGAPTCFSISSFKGTDISSSTVQGWLTWPEMLNSLVPELRSLPKPANQVPPRRQ
Sbjct: 61  QPPVTPPGAPTCFSISSFKGTDISSSTVQGWLTWPEMLNSLVPELRSLPKPANQVPPRRQ 120

Query: 121 IVGDTATVSTLATVVGQPNTPSGKWEENWWLLGGGASFLAGRCVPGSCTHGRAPALISPY 180
           IVGDTATVSTLATVVGQPNTPSGKWEENWWLLGGGASFLAGRCVPGSCTHGRAPALISPY
Sbjct: 121 IVGDTATVSTLATVVGQPNTPSGKWEENWWLLGGGASFLAGRCVPGSCTHGRAPALISPY 180

Query: 181 HSYPCWTPNSRDAHCLVHPMPLASEQAL 208
           HSYPCWTPNSRDAHCLVHPMPLASEQAL
Sbjct: 181 HSYPCWTPNSRDAHCLVHPMPLASEQAL 208


>gi|239750107 PREDICTED: hypothetical protein XP_002347294 [Homo
           sapiens]
          Length = 208

 Score =  437 bits (1125), Expect = e-123
 Identities = 208/208 (100%), Positives = 208/208 (100%)

Query: 1   MRRAMAFTMSVWRSMTITAAVPRPVCACTSASKSISTVSHTDLGISGVDEPPGITARRLS 60
           MRRAMAFTMSVWRSMTITAAVPRPVCACTSASKSISTVSHTDLGISGVDEPPGITARRLS
Sbjct: 1   MRRAMAFTMSVWRSMTITAAVPRPVCACTSASKSISTVSHTDLGISGVDEPPGITARRLS 60

Query: 61  QPPVTPPGAPTCFSISSFKGTDISSSTVQGWLTWPEMLNSLVPELRSLPKPANQVPPRRQ 120
           QPPVTPPGAPTCFSISSFKGTDISSSTVQGWLTWPEMLNSLVPELRSLPKPANQVPPRRQ
Sbjct: 61  QPPVTPPGAPTCFSISSFKGTDISSSTVQGWLTWPEMLNSLVPELRSLPKPANQVPPRRQ 120

Query: 121 IVGDTATVSTLATVVGQPNTPSGKWEENWWLLGGGASFLAGRCVPGSCTHGRAPALISPY 180
           IVGDTATVSTLATVVGQPNTPSGKWEENWWLLGGGASFLAGRCVPGSCTHGRAPALISPY
Sbjct: 121 IVGDTATVSTLATVVGQPNTPSGKWEENWWLLGGGASFLAGRCVPGSCTHGRAPALISPY 180

Query: 181 HSYPCWTPNSRDAHCLVHPMPLASEQAL 208
           HSYPCWTPNSRDAHCLVHPMPLASEQAL
Sbjct: 181 HSYPCWTPNSRDAHCLVHPMPLASEQAL 208


>gi|239744411 PREDICTED: hypothetical protein XP_002343156 [Homo
           sapiens]
          Length = 208

 Score =  437 bits (1125), Expect = e-123
 Identities = 208/208 (100%), Positives = 208/208 (100%)

Query: 1   MRRAMAFTMSVWRSMTITAAVPRPVCACTSASKSISTVSHTDLGISGVDEPPGITARRLS 60
           MRRAMAFTMSVWRSMTITAAVPRPVCACTSASKSISTVSHTDLGISGVDEPPGITARRLS
Sbjct: 1   MRRAMAFTMSVWRSMTITAAVPRPVCACTSASKSISTVSHTDLGISGVDEPPGITARRLS 60

Query: 61  QPPVTPPGAPTCFSISSFKGTDISSSTVQGWLTWPEMLNSLVPELRSLPKPANQVPPRRQ 120
           QPPVTPPGAPTCFSISSFKGTDISSSTVQGWLTWPEMLNSLVPELRSLPKPANQVPPRRQ
Sbjct: 61  QPPVTPPGAPTCFSISSFKGTDISSSTVQGWLTWPEMLNSLVPELRSLPKPANQVPPRRQ 120

Query: 121 IVGDTATVSTLATVVGQPNTPSGKWEENWWLLGGGASFLAGRCVPGSCTHGRAPALISPY 180
           IVGDTATVSTLATVVGQPNTPSGKWEENWWLLGGGASFLAGRCVPGSCTHGRAPALISPY
Sbjct: 121 IVGDTATVSTLATVVGQPNTPSGKWEENWWLLGGGASFLAGRCVPGSCTHGRAPALISPY 180

Query: 181 HSYPCWTPNSRDAHCLVHPMPLASEQAL 208
           HSYPCWTPNSRDAHCLVHPMPLASEQAL
Sbjct: 181 HSYPCWTPNSRDAHCLVHPMPLASEQAL 208


>gi|116284392 mucin 2 precursor [Homo sapiens]
          Length = 5179

 Score = 32.3 bits (72), Expect = 0.29
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 4/87 (4%)

Query: 14   SMTITAAVPRPVCACTSASKSISTVSHTDLGISGVDEPPGITARRLSQPPVTPPGAPTCF 73
            S T+ + +P  +   ++A  S  T   T  G   +  PP  T    + PP TP    T  
Sbjct: 4234 STTLLSTLPPAIEMTSTAPPSTPTAPTTTSGGHTLSPPPSTT----TSPPGTPTRGTTTG 4289

Query: 74   SISSFKGTDISSSTVQGWLTWPEMLNS 100
            S S+   + + ++T   W   P  L++
Sbjct: 4290 SSSAPTPSTVQTTTTSAWTPTPTPLST 4316


>gi|239749951 PREDICTED: similar to mucin 2 [Homo sapiens]
          Length = 2639

 Score = 32.3 bits (72), Expect = 0.29
 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 4/87 (4%)

Query: 14   SMTITAAVPRPVCACTSASKSISTVSHTDLGISGVDEPPGITARRLSQPPVTPPGAPTCF 73
            S T+ + +P  +   ++A  S  T   T  G   +  PP  T    + PP TP    T  
Sbjct: 1694 STTLLSTLPPAIEMTSTAPPSTPTAPTTTSGGHTLSPPPSTT----TSPPGTPTRGTTTG 1749

Query: 74   SISSFKGTDISSSTVQGWLTWPEMLNS 100
            S S+   + + ++T   W   P  L++
Sbjct: 1750 SSSAPTPSTVQTTTTSAWTPTPTPLST 1776


>gi|119709834 castor homolog 1, zinc finger isoform a [Homo sapiens]
          Length = 1759

 Score = 31.6 bits (70), Expect = 0.50
 Identities = 34/154 (22%), Positives = 61/154 (39%), Gaps = 34/154 (22%)

Query: 60   SQPPVTPPGAP----TCFSISSFKGTDISSSTVQGW---LTWPEMLNSLVPELRSLPKPA 112
            ++PP+ P   P    T  ++SS +G   S ++V      L W + L S +P++  +P   
Sbjct: 1078 TKPPMAPSSPPVPPVTTATVSSLEGPAPSPASVPSTPTLLAWKQ-LASTIPQMPQIPASV 1136

Query: 113  NQVPPRRQIVGDTATVSTLATVVGQPNTPSG--KWEENWWLLGGGASFLAG---RCVPGS 167
              +P         + ++T +    +P    G  +++EN   L     +       C+ G+
Sbjct: 1137 PHLP--------ASPLATTSLENAKPQVKPGFLQFQENDPCLATDCKYANKFHFHCLFGN 1188

Query: 168  CTHGRAPALISPYHSYPCWTPNSRDAHCLVHPMP 201
            C              Y C T    ++HCL H  P
Sbjct: 1189 C-------------KYVCKTSGKAESHCLDHINP 1209


>gi|222136611 poliovirus receptor-related 4 [Homo sapiens]
          Length = 510

 Score = 31.6 bits (70), Expect = 0.50
 Identities = 31/112 (27%), Positives = 44/112 (39%), Gaps = 19/112 (16%)

Query: 98  LNSLVPELRSL-PKPANQVPPRRQIVGDTATVSTLATVVGQPNTPSGKWEENWWLLGGGA 156
           L  LVP L SL P PA +        G   T++   T  G P  PS  W+          
Sbjct: 143 LRVLVPPLPSLNPGPALEE-------GQGLTLAASCTAEGSP-APSVTWDTE-------- 186

Query: 157 SFLAGRCVPGSCTHGRAPALISPYHSYPCWTPNSRDAHCLVHPMPLASEQAL 208
             + G     S  H R+ A+ S +H  P  + N +   C+V    L  +Q +
Sbjct: 187 --VKGTTSSRSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRI 236


>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
          Length = 703

 Score = 31.2 bits (69), Expect = 0.65
 Identities = 17/47 (36%), Positives = 21/47 (44%)

Query: 44  GISGVDEPPGITARRLSQPPVTPPGAPTCFSISSFKGTDISSSTVQG 90
           G  GV   PGIT       P  PPGAP  F  +   G  + +  V+G
Sbjct: 507 GPPGVPGSPGITGPPGPPGPPGPPGAPGAFDETGIAGLHLPNGGVEG 553


>gi|24308215 retrotransposon gag domain containing 1 [Homo sapiens]
          Length = 1388

 Score = 31.2 bits (69), Expect = 0.65
 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 6/94 (6%)

Query: 13  RSMTITAAVPRPVCACTSASKSISTVSHTDLGISGVDEPPGITARRLSQPPVTPPGAPTC 72
           ++MT  A     + A TS S S   +  T  G+    +   + +  LS+P +TP  + T 
Sbjct: 568 KAMTSGAMSTPLMTAQTSGSTSTLLMRDTASGVMSCPQMRSLASGALSKPLMTPKASGTM 627

Query: 73  F------SISSFKGTDISSSTVQGWLTWPEMLNS 100
           F      + S    T +   TV G L+ P+M ++
Sbjct: 628 FTEKMTTTASEAMPTLLMRDTVSGALSMPQMTDT 661


>gi|120953251 neuron navigator 3 [Homo sapiens]
          Length = 2363

 Score = 31.2 bits (69), Expect = 0.65
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 79  KGTDISSSTVQGWLTWPEMLNSLVPELRSLPKPANQVPPRRQIVGDTATVS----TLATV 134
           K + I+S   +G  T      SL+P    +PKP ++VP  +Q +   +T S       T 
Sbjct: 498 KTSKIASLIPKGSKTTAAKKESLIPSSSGIPKPGSKVPTVKQTISPGSTASKESEKFRTT 557

Query: 135 VGQPNTPSGK 144
            G P+    K
Sbjct: 558 KGSPSQSLSK 567


>gi|153792112 PRAME family member 20 [Homo sapiens]
          Length = 475

 Score = 31.2 bits (69), Expect = 0.65
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 11/85 (12%)

Query: 33  KSISTVSHTDLGISGVDEPPGITARRLSQPPVTPPGAPTCFSIS--SFKGTDISSSTVQG 90
           K  +T+ + DL   G+ +         SQ     P    CF ++  SF+G  IS++T++ 
Sbjct: 346 KVAATLEYLDLDDCGIVD---------SQVNAILPALSRCFELTTFSFRGNPISTATLEN 396

Query: 91  WLTWPEMLNSLVPELRSLPKPANQV 115
            L     LN+L  EL   P+ +  V
Sbjct: 397 LLCHTIRLNNLCLELYPAPRESYDV 421


>gi|153945800 PRAME family member 21 [Homo sapiens]
          Length = 475

 Score = 31.2 bits (69), Expect = 0.65
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 11/85 (12%)

Query: 33  KSISTVSHTDLGISGVDEPPGITARRLSQPPVTPPGAPTCFSIS--SFKGTDISSSTVQG 90
           K  +T+ + DL   G+ +         SQ     P    CF ++  SF+G  IS++T++ 
Sbjct: 346 KVAATLEYLDLDDCGIVD---------SQVNAILPALSRCFELTTFSFRGNPISTATLEN 396

Query: 91  WLTWPEMLNSLVPELRSLPKPANQV 115
            L     LN+L  EL   P+ +  V
Sbjct: 397 LLCHTIRLNNLCLELYPAPRESYDV 421


>gi|122937341 hypothetical protein LOC388960 [Homo sapiens]
          Length = 922

 Score = 30.8 bits (68), Expect = 0.85
 Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 4/94 (4%)

Query: 23  RPVCACTSASKSI--STVSHTDLGISGVDEPPGITARRLSQPPVTPPGAPTCFSISSFKG 80
           RP    ++ S ++  S  + T+  ++G   P    + + +QP    P  PT    ++ + 
Sbjct: 753 RPDSTNSAQSNAVNPSRPAPTNTSLTGPATPAQPISAKATQPSSANPTQPTVPQSAASRP 812

Query: 81  TDISSSTVQGWLTWPEMLNSLVPELRSLPKPANQ 114
           +   +S+       P  +++ V  LRSLPKP NQ
Sbjct: 813 SAYKTSSCSSLQREP--VSTAVTSLRSLPKPQNQ 844


>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 [Homo
            sapiens]
          Length = 2231

 Score = 30.8 bits (68), Expect = 0.85
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 8/67 (11%)

Query: 29   TSASKSISTVSHTDLGISGVDEPPGITARRLSQPPVTPPGAPTCFSISSFKGTDISSSTV 88
            T   +S S  S++  GIS    P  +        PV  P +P+  SISSF G +  S + 
Sbjct: 966  TPQPESKSKDSYSSQGISQPPTPGNL--------PVPSPMSPSSASISSFHGDESDSISS 1017

Query: 89   QGWLTWP 95
             GW   P
Sbjct: 1018 PGWPKTP 1024


>gi|4507831 Unc-51-like kinase 1 [Homo sapiens]
          Length = 1050

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 5/64 (7%)

Query: 123 GDTATVSTLATVVGQP---NTPSGKWEENWWLLG--GGASFLAGRCVPGSCTHGRAPALI 177
           G T++ S +   VG P   +TP        +  G  G AS  A   VPG C+   AP L 
Sbjct: 744 GGTSSPSPVVFTVGSPPSGSTPPQGPRTRMFSAGPTGSASSSARHLVPGPCSEAPAPELP 803

Query: 178 SPYH 181
           +P H
Sbjct: 804 APGH 807


>gi|239747673 PREDICTED: doublecortin domain-containing protein
           ENSP00000382097-like [Homo sapiens]
          Length = 714

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 25/93 (26%), Positives = 32/93 (34%), Gaps = 13/93 (13%)

Query: 22  PRPVCACTSASKSISTVSHTDLGISGVDEPPGITARRLSQPPVTPPGAPTCFSISSFKGT 81
           P P+      S+S    S   L       PPG      S P   P  +P+C S       
Sbjct: 92  PEPLALAARRSQSPRVASTRSL------RPPGSPVPSPSSPRPVPVPSPSCAS------- 138

Query: 82  DISSSTVQGWLTWPEMLNSLVPELRSLPKPANQ 114
             S   V G   W  +     P  RSL  PA++
Sbjct: 139 GWSGPPVGGARAWARLCRRRCPRCRSLSAPASE 171


>gi|239741542 PREDICTED: doublecortin domain-containing protein
           ENSP00000382097-like [Homo sapiens]
          Length = 510

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 25/93 (26%), Positives = 32/93 (34%), Gaps = 13/93 (13%)

Query: 22  PRPVCACTSASKSISTVSHTDLGISGVDEPPGITARRLSQPPVTPPGAPTCFSISSFKGT 81
           P P+      S+S    S   L       PPG      S P   P  +P+C S       
Sbjct: 92  PEPLALAARRSQSPRVASTRSL------RPPGSPVPSPSSPRPVPVPSPSCAS------- 138

Query: 82  DISSSTVQGWLTWPEMLNSLVPELRSLPKPANQ 114
             S   V G   W  +     P  RSL  PA++
Sbjct: 139 GWSGPPVGGARAWARLCRRRCPRCRSLSAPASE 171


>gi|239755778 PREDICTED: mucin 19, oligomeric [Homo sapiens]
          Length = 598

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 33/153 (21%), Positives = 59/153 (38%), Gaps = 31/153 (20%)

Query: 29  TSASKSISTVSHTDLGISGVDEPPGITARRLSQPPVTPPGAPTCFSISSFKGTDISSSTV 88
           TS+ +  + VS    GI+G+ E       + +    T PG PT  + S    T +  ++ 
Sbjct: 272 TSSQEGTTVVSS---GITGIPETSISGPSKEASDKTTAPGPPTTVTAS----TGVKETSE 324

Query: 89  QGWLTWPEMLNSLVPELRSLPKPANQVPPRRQIVGDTATVSTLATV---------VGQPN 139
            G  T   ++ + VP    + +P   V   R++  +  T   LA++         +G+  
Sbjct: 325 TGVQTGSTLVTAGVPTRPQVSQPETTVVATREVETENKT-ECLASLPPAPVCHGPLGEEK 383

Query: 140 TPSGKWEENWWLLGGGASFLAGRCVPGSCTHGR 172
           +P   W  N              C  G+CT  +
Sbjct: 384 SPGDIWTAN--------------CHRGTCTDAK 402


>gi|239750280 PREDICTED: mucin 19, oligomeric [Homo sapiens]
          Length = 598

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 33/153 (21%), Positives = 59/153 (38%), Gaps = 31/153 (20%)

Query: 29  TSASKSISTVSHTDLGISGVDEPPGITARRLSQPPVTPPGAPTCFSISSFKGTDISSSTV 88
           TS+ +  + VS    GI+G+ E       + +    T PG PT  + S    T +  ++ 
Sbjct: 272 TSSQEGTTVVSS---GITGIPETSISGPSKEASDKTTAPGPPTTVTAS----TGVKETSE 324

Query: 89  QGWLTWPEMLNSLVPELRSLPKPANQVPPRRQIVGDTATVSTLATV---------VGQPN 139
            G  T   ++ + VP    + +P   V   R++  +  T   LA++         +G+  
Sbjct: 325 TGVQTGSTLVTAGVPTRPQVSQPETTVVATREVETENKT-ECLASLPPAPVCHGPLGEEK 383

Query: 140 TPSGKWEENWWLLGGGASFLAGRCVPGSCTHGR 172
           +P   W  N              C  G+CT  +
Sbjct: 384 SPGDIWTAN--------------CHRGTCTDAK 402


>gi|239744589 PREDICTED: mucin 19 [Homo sapiens]
          Length = 598

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 33/153 (21%), Positives = 59/153 (38%), Gaps = 31/153 (20%)

Query: 29  TSASKSISTVSHTDLGISGVDEPPGITARRLSQPPVTPPGAPTCFSISSFKGTDISSSTV 88
           TS+ +  + VS    GI+G+ E       + +    T PG PT  + S    T +  ++ 
Sbjct: 272 TSSQEGTTVVSS---GITGIPETSISGPSKEASDKTTAPGPPTTVTAS----TGVKETSE 324

Query: 89  QGWLTWPEMLNSLVPELRSLPKPANQVPPRRQIVGDTATVSTLATV---------VGQPN 139
            G  T   ++ + VP    + +P   V   R++  +  T   LA++         +G+  
Sbjct: 325 TGVQTGSTLVTAGVPTRPQVSQPETTVVATREVETENKT-ECLASLPPAPVCHGPLGEEK 383

Query: 140 TPSGKWEENWWLLGGGASFLAGRCVPGSCTHGR 172
           +P   W  N              C  G+CT  +
Sbjct: 384 SPGDIWTAN--------------CHRGTCTDAK 402


>gi|115511024 lipase maturation factor 1 [Homo sapiens]
          Length = 567

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 29/114 (25%), Positives = 41/114 (35%), Gaps = 20/114 (17%)

Query: 79  KGTDISSSTVQGWLTWPEMLNSLVPE------LRSLPKPANQVPPRRQIVGDTATVSTLA 132
           +  ++S   +  WL+ P +LN L           SL    N       I  + A V    
Sbjct: 365 RAANVSLGVLLAWLSVPVVLNLLSSRQVMNTHFNSL-HIVNTYGAFGSITKERAEVILQG 423

Query: 133 TVVGQPNTPSGKWEENWWLLGGGASFLAGRCVPGSCTHGRAPALISPYHSYPCW 186
           T     + P   WE+  +           +C PG  +  R P LISPYH    W
Sbjct: 424 TASSNASAPDAMWEDYEF-----------KCKPGDPS--RRPCLISPYHYRLDW 464


>gi|239752280 PREDICTED: similar to family with sequence similarity
           48, member B2 [Homo sapiens]
          Length = 779

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 14/99 (14%)

Query: 46  SGVDEPPGITARRLSQP----PVTPPGA-------PTCFSISSFKGT-DISSSTVQGW-- 91
           SG   P GI+   L       P   PGA       P  F +++ +G   ++    QGW  
Sbjct: 562 SGAPAPAGISGSGLQSSGGPLPDARPGAVQASSPAPLQFFLNTPEGLRPLTLQVPQGWAV 621

Query: 92  LTWPEMLNSLVPELRSLPKPANQVPPRRQIVGDTATVST 130
           LT P+  +  +  L+ L +P    PP+    G T  +ST
Sbjct: 622 LTGPQQQSHQLVSLQQLQQPTAAHPPQPGPQGSTLGLST 660


>gi|148237498 deltex 4 homolog [Homo sapiens]
          Length = 619

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 18/100 (18%)

Query: 60  SQPPVTPPGAPTCFSISSFKGTDISSSTVQGWLTWPEMLNSLVP----ELRSLP----KP 111
           + PP++P   P C  + S K   ++ ST  G L  P    ++ P    +L  LP    KP
Sbjct: 182 TSPPMSPCSCPQCVLVMSVKAAVVNGST--GPLQLPVTRKNMPPPGVVKLPPLPGSGAKP 239

Query: 112 ANQVPPRR--------QIVGDTATVSTLATVVGQPNTPSG 143
            +     R        Q++   A+     T +G P +P G
Sbjct: 240 LDSTGTIRGPLKTAPSQVIRRQASSMPTGTTMGSPASPPG 279


>gi|210032463 family with sequence similarity 48, member B2 [Homo
           sapiens]
          Length = 817

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 14/99 (14%)

Query: 46  SGVDEPPGITARRLSQP----PVTPPGA-------PTCFSISSFKGT-DISSSTVQGW-- 91
           SG   P GI+   L       P   PGA       P  F +++ +G   ++    QGW  
Sbjct: 600 SGAPAPAGISGSGLQSSGGPLPDARPGAVQASSPAPLQFFLNTPEGLRPLTLQVPQGWAV 659

Query: 92  LTWPEMLNSLVPELRSLPKPANQVPPRRQIVGDTATVST 130
           LT P+  +  +  L+ L +P    PP+    G T  +ST
Sbjct: 660 LTGPQQQSHQLVSLQQLQQPTAAHPPQPGPQGSTLGLST 698


>gi|45387951 transmembrane protein 108 [Homo sapiens]
          Length = 575

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 24/84 (28%), Positives = 35/84 (41%)

Query: 5   MAFTMSVWRSMTITAAVPRPVCACTSASKSISTVSHTDLGISGVDEPPGITARRLSQPPV 64
           +A T++   S +  +  P P    T++SK              + +PPG T+R  + PP 
Sbjct: 100 IAATVTAPHSESSLSTGPAPAAMATTSSKPEGRPRGQAAPTILLTKPPGATSRPTTAPPR 159

Query: 65  TPPGAPTCFSISSFKGTDISSSTV 88
           T    P     SS KG   SS  V
Sbjct: 160 TTTRRPPRPPGSSRKGAGNSSRPV 183


>gi|210147493 transmembrane protein 108 [Homo sapiens]
          Length = 575

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 24/84 (28%), Positives = 35/84 (41%)

Query: 5   MAFTMSVWRSMTITAAVPRPVCACTSASKSISTVSHTDLGISGVDEPPGITARRLSQPPV 64
           +A T++   S +  +  P P    T++SK              + +PPG T+R  + PP 
Sbjct: 100 IAATVTAPHSESSLSTGPAPAAMATTSSKPEGRPRGQAAPTILLTKPPGATSRPTTAPPR 159

Query: 65  TPPGAPTCFSISSFKGTDISSSTV 88
           T    P     SS KG   SS  V
Sbjct: 160 TTTRRPPRPPGSSRKGAGNSSRPV 183


>gi|146134388 YLP motif containing 1 [Homo sapiens]
          Length = 2146

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 17/88 (19%)

Query: 49  DEPPGITARRLSQPPVTPPGAPTCFSISSFKGTDISSSTVQGWLTWPEMLNSLVPELRSL 108
           D PPG+    L  PP +PP  P  +   S           Q ++  P+   S  P   S 
Sbjct: 133 DGPPGLVPMELESPPESPPVPPGSYMPPS-----------QSYMPPPQPPPSYYPPTSSQ 181

Query: 109 P--KPA----NQVPPRRQIVGDTATVST 130
           P   PA    +Q PP +  +  T + S+
Sbjct: 182 PYLPPAQPSPSQSPPSQSYLAPTPSYSS 209


>gi|239743293 PREDICTED: mucin 12 [Homo sapiens]
          Length = 5478

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 33/130 (25%), Positives = 48/130 (36%), Gaps = 11/130 (8%)

Query: 24   PVCACTSASKSISTVSHTDLGISGVDEPPG-ITARRLSQPPVTPPGAPTCFSISSFKGTD 82
            P    TS S   ST SH+  G +     PG  TA    Q   T   +P     + F  + 
Sbjct: 3678 PASTTTSGSSQESTTSHSSSGSTDTALSPGSTTALSFGQESTTFHSSPGSTHTTLFPDST 3737

Query: 83   ISSSTVQGWLTWPEMLNSLVPELRSLPKPANQVPPRRQIVGDTATVST----LATVVGQP 138
             SS  V+        ++S     R+   PA+   P  Q  G++    T      T    P
Sbjct: 3738 TSSGIVEA----STRVHSSTGSPRTTLSPASSTSPGLQ--GESTAFQTHPASTHTTPSPP 3791

Query: 139  NTPSGKWEEN 148
            +T +   EE+
Sbjct: 3792 STATAPVEES 3801



 Score = 28.5 bits (62), Expect = 4.2
 Identities = 33/130 (25%), Positives = 48/130 (36%), Gaps = 11/130 (8%)

Query: 24   PVCACTSASKSISTVSHTDLGISGVDEPPG-ITARRLSQPPVTPPGAPTCFSISSFKGTD 82
            P    TS     ST SH+  G +     PG  TA    Q   T   +P     + F  + 
Sbjct: 2595 PASTTTSGPSQESTTSHSSPGSTDTALSPGSTTALSFGQESTTFHSSPGSTHTTLFPDST 2654

Query: 83   ISSSTVQGWLTWPEMLNSLVPELRSLPKPANQVPPRRQIVGDTATVST----LATVVGQP 138
             SS  V+        ++S     R+   PA+   P  Q  G++ T  T      T    P
Sbjct: 2655 TSSGIVEA----STRVHSSTGSPRTTLSPASSTSPGLQ--GESTTFQTHPASTHTTPSPP 2708

Query: 139  NTPSGKWEEN 148
            +T +   EE+
Sbjct: 2709 STATAPVEES 2718


>gi|150170670 piccolo isoform 2 [Homo sapiens]
          Length = 4935

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 26/102 (25%), Positives = 37/102 (36%), Gaps = 8/102 (7%)

Query: 60   SQPPVTPPGAPTCFSISSFKGTDISSSTVQGWLTWPEMLNSLVPELRSLPKPANQVPPR- 118
            S+PP+ P         ++ K TDI        LT    LN +      LP P + + P  
Sbjct: 2506 SKPPIAPKPVIPQLPTTTQKPTDIHPKPTGLSLTSSMTLNLVTSADYKLPSPTSPLSPHS 2565

Query: 119  -------RQIVGDTATVSTLATVVGQPNTPSGKWEENWWLLG 153
                    + + +T  V TL +  G P   S       W LG
Sbjct: 2566 NKSSPRFSKSLTETYVVITLPSEPGTPTDSSASQAITSWPLG 2607


>gi|150378539 piccolo isoform 1 [Homo sapiens]
          Length = 5142

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 26/102 (25%), Positives = 37/102 (36%), Gaps = 8/102 (7%)

Query: 60   SQPPVTPPGAPTCFSISSFKGTDISSSTVQGWLTWPEMLNSLVPELRSLPKPANQVPPR- 118
            S+PP+ P         ++ K TDI        LT    LN +      LP P + + P  
Sbjct: 2506 SKPPIAPKPVIPQLPTTTQKPTDIHPKPTGLSLTSSMTLNLVTSADYKLPSPTSPLSPHS 2565

Query: 119  -------RQIVGDTATVSTLATVVGQPNTPSGKWEENWWLLG 153
                    + + +T  V TL +  G P   S       W LG
Sbjct: 2566 NKSSPRFSKSLTETYVVITLPSEPGTPTDSSASQAITSWPLG 2607


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.130    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,888,940
Number of Sequences: 37866
Number of extensions: 529493
Number of successful extensions: 2110
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 2014
Number of HSP's gapped (non-prelim): 148
length of query: 208
length of database: 18,247,518
effective HSP length: 98
effective length of query: 110
effective length of database: 14,536,650
effective search space: 1599031500
effective search space used: 1599031500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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