Guide to the Human Genome
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Name: PRAMEF20 Sequence: fasta or formatted (475aa) NCBI GI: 153792112
Description:

PRAME family member 20

Referenced in:

Leucine-rich Repeat Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8         23           2
 C cysteine            5.1         24           3
 D aspartate           4.6         22           2
 E glutamate           6.1         29           2
 F phenylalanine       4.4         21           1
 G glycine             3.4         16           1
 H histidine           1.5          7           1
 I isoleucine          3.6         17           1
 K lysine              4.2         20           2
 L leucine            17.9         85           2
 M methionine          3.2         15           2
 N asparagine          4.2         20           2
 P proline             5.1         24           2
 Q glutamine           4.2         20           2
 R arginine            8.0         38           2
 S serine              5.5         26           1
 T threonine           5.3         25           2
 V valine              5.7         27           1
 W tryptophan          1.3          6           1
 Y tyrosine            2.1         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PRAME family member 20 
PRAMEF21              1.000   PRAME family member 21 
PRAMEF5               0.813   PRAME family member 5 
PRAMEF6               0.813   PRAME family member 6 
PRAMEF15              0.811   PRAME family member 15 
PRAMEF9               0.811   PRAME family member 9 
PRAMEF23              0.808   PREDICTED: PRAME family member 23 
PRAMEF4               0.804   PRAME family member 4 
PRAMEF11              0.791   PREDICTED: PRAME family member 11 
PRAMEF11              0.716   PRAME family member 11 
LOC645359             0.643   PREDICTED: PRAME family member 
PRAMEF25              0.639   PREDICTED: PRAME family member 25-like 
PRAMEF12              0.581   PRAME family member 12 
LOC729516             0.575   PREDICTED: similar to Putative PRAME family member ...
PRAMEF7               0.574   PRAME family member 7 
PRAMEF8               0.574   PRAME family member 8 
PRAMEF22              0.464   PRAME family member 22 
PRAMEF18              0.460   PRAME family member 18 
PRAMEF3               0.458   PRAME family member 3 
PRAMEF19              0.456   PRAME family member 19 
PRAMEF17              0.445   PRAME family member 17 
PRAMEF16              0.445   PRAME family member 16 
PRAME                 0.438   preferentially expressed antigen in melanoma 
PRAME                 0.438   preferentially expressed antigen in melanoma 
PRAME                 0.438   preferentially expressed antigen in melanoma 
PRAME                 0.438   preferentially expressed antigen in melanoma 
PRAME                 0.438   preferentially expressed antigen in melanoma 
PRAMEF13              0.429   PRAME family member 13 
PRAMEF1               0.426   PRAME family member 1 
PRAMEF10              0.424   PRAME family member 10 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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