Guide to the Human Genome
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Name: LOC100292480 Sequence: fasta or formatted (208aa) NCBI GI: 239755579
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         18           2
 C cysteine            3.4          7           1
 D aspartate           2.4          5           1
 E glutamate           2.9          6           2
 F phenylalanine       1.9          4           1
 G glycine             7.2         15           3
 H histidine           2.4          5           1
 I isoleucine          3.8          8           1
 K lysine              1.9          4           1
 L leucine             7.2         15           2
 M methionine          2.9          6           1
 N asparagine          2.4          5           1
 P proline            11.5         24           2
 Q glutamine           2.9          6           1
 R arginine            5.8         12           2
 S serine             12.0         25           3
 T threonine           9.1         19           1
 V valine              7.2         15           2
 W tryptophan          3.4          7           2
 Y tyrosine            1.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100290811          1.000   PREDICTED: hypothetical protein XP_002347294 
LOC100287422          1.000   PREDICTED: hypothetical protein XP_002343156 
MUC2                  0.017   mucin 2 precursor 
LOC100294420          0.017   PREDICTED: similar to mucin 2 
CASZ1                 0.017   castor homolog 1, zinc finger isoform a 
PVRL4                 0.017   poliovirus receptor-related 4 
COL8A2                0.015   collagen, type VIII, alpha 2 
RGAG1                 0.015   retrotransposon gag domain containing 1 
NAV3                  0.015   neuron navigator 3 
PRAMEF20              0.015   PRAME family member 20 
PRAMEF21              0.015   PRAME family member 21 
C2orf78               0.015   hypothetical protein LOC388960 
ARID1B                0.015   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ULK1                  0.012   Unc-51-like kinase 1 
LOC728597             0.012   PREDICTED: doublecortin domain-containing protein E...
LOC728597             0.012   PREDICTED: doublecortin domain-containing protein E...
MUC19                 0.012   PREDICTED: mucin 19, oligomeric 
MUC19                 0.012   PREDICTED: mucin 19, oligomeric 
MUC19                 0.012   PREDICTED: mucin 19 
LMF1                  0.012   lipase maturation factor 1 
LOC100294444          0.010   PREDICTED: similar to family with sequence similari...
DTX4                  0.010   deltex 4 homolog 
FAM48B2               0.010   family with sequence similarity 48, member B2 [Homo...
TMEM108               0.010   transmembrane protein 108 
TMEM108               0.010   transmembrane protein 108 
YLPM1                 0.010   YLP motif containing 1 
MUC12                 0.010   PREDICTED: mucin 12 
PCLO                  0.010   piccolo isoform 2 
PCLO                  0.010   piccolo isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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