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Search of human proteins with 239755386
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755386 PREDICTED: hypothetical protein XP_002344548 [Homo
sapiens]
(111 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755386 PREDICTED: hypothetical protein XP_002344548 [Homo ... 246 4e-66
gi|239749860 PREDICTED: hypothetical protein XP_002347189 [Homo ... 246 4e-66
gi|62362414 c-abl oncogene 1, receptor tyrosine kinase isoform a... 37 0.003
gi|62362412 c-abl oncogene 1, receptor tyrosine kinase isoform b... 37 0.003
gi|25777612 proteasome 26S non-ATPase subunit 3 [Homo sapiens] 36 0.008
gi|239752488 PREDICTED: FLJ40296 protein family member [Homo sap... 34 0.022
gi|38348198 proline rich 20 [Homo sapiens] 34 0.022
gi|194353955 hypothetical protein LOC729250 [Homo sapiens] 34 0.022
gi|194353953 hypothetical protein LOC729246 [Homo sapiens] 34 0.022
gi|194353951 hypothetical protein LOC729240 [Homo sapiens] 34 0.022
gi|194353949 hypothetical protein LOC729233 [Homo sapiens] 34 0.022
gi|16579828 zinc finger protein 91 [Homo sapiens] 33 0.038
gi|67782346 lysyl oxidase-like 1 preproprotein [Homo sapiens] 33 0.064
gi|122937187 glycosyltransferase 8 domain containing 4 [Homo sap... 33 0.064
gi|19924099 synapsin I isoform Ia [Homo sapiens] 32 0.084
gi|19924097 synapsin I isoform Ib [Homo sapiens] 32 0.084
gi|58219030 hypothetical protein LOC399726 [Homo sapiens] 32 0.11
gi|169167101 PREDICTED: hypothetical protein [Homo sapiens] 32 0.14
gi|239750586 PREDICTED: hypothetical protein XP_002347439 [Homo ... 32 0.14
gi|239744883 PREDICTED: hypothetical protein XP_002344274 [Homo ... 32 0.14
gi|41281907 StAR-related lipid transfer (START) domain containin... 32 0.14
gi|16445031 StAR-related lipid transfer (START) domain containin... 32 0.14
gi|41281898 StAR-related lipid transfer (START) domain containin... 32 0.14
gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3 pre... 32 0.14
gi|169201741 PREDICTED: hypothetical protein [Homo sapiens] 31 0.19
gi|169201345 PREDICTED: hypothetical protein [Homo sapiens] 31 0.19
gi|169188544 PREDICTED: hypothetical protein [Homo sapiens] 31 0.19
gi|115511036 alpha-kinase 3 [Homo sapiens] 31 0.19
gi|50080156 hypothetical protein LOC286223 isoform 1 [Homo sapiens] 31 0.19
gi|139394604 bromo adjacent homology domain containing 1 [Homo s... 31 0.19
>gi|239755386 PREDICTED: hypothetical protein XP_002344548 [Homo
sapiens]
Length = 111
Score = 246 bits (627), Expect = 4e-66
Identities = 111/111 (100%), Positives = 111/111 (100%)
Query: 1 MPLALPPLGSGPQPGNGCCGGCWMVAATGPASPQQPEAWQRRQRNGEKTNNPPNGCLRRR 60
MPLALPPLGSGPQPGNGCCGGCWMVAATGPASPQQPEAWQRRQRNGEKTNNPPNGCLRRR
Sbjct: 1 MPLALPPLGSGPQPGNGCCGGCWMVAATGPASPQQPEAWQRRQRNGEKTNNPPNGCLRRR 60
Query: 61 PPEPGPRGVRRRRTGGLKPARVPGCAAAAAAVLEAVEGERPTLRRSQPWKW 111
PPEPGPRGVRRRRTGGLKPARVPGCAAAAAAVLEAVEGERPTLRRSQPWKW
Sbjct: 61 PPEPGPRGVRRRRTGGLKPARVPGCAAAAAAVLEAVEGERPTLRRSQPWKW 111
>gi|239749860 PREDICTED: hypothetical protein XP_002347189 [Homo
sapiens]
Length = 111
Score = 246 bits (627), Expect = 4e-66
Identities = 111/111 (100%), Positives = 111/111 (100%)
Query: 1 MPLALPPLGSGPQPGNGCCGGCWMVAATGPASPQQPEAWQRRQRNGEKTNNPPNGCLRRR 60
MPLALPPLGSGPQPGNGCCGGCWMVAATGPASPQQPEAWQRRQRNGEKTNNPPNGCLRRR
Sbjct: 1 MPLALPPLGSGPQPGNGCCGGCWMVAATGPASPQQPEAWQRRQRNGEKTNNPPNGCLRRR 60
Query: 61 PPEPGPRGVRRRRTGGLKPARVPGCAAAAAAVLEAVEGERPTLRRSQPWKW 111
PPEPGPRGVRRRRTGGLKPARVPGCAAAAAAVLEAVEGERPTLRRSQPWKW
Sbjct: 61 PPEPGPRGVRRRRTGGLKPARVPGCAAAAAAVLEAVEGERPTLRRSQPWKW 111
>gi|62362414 c-abl oncogene 1, receptor tyrosine kinase isoform a
[Homo sapiens]
Length = 1130
Score = 37.0 bits (84), Expect = 0.003
Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 8/94 (8%)
Query: 2 PLALPPLGSGPQPGNGCCGGCWMVAATGPASPQQPEAWQRRQRNGEKTNNPPNGCLRRRP 61
P A P+ + G+G GG + GPA E+ RR ++ ++ G L R
Sbjct: 845 PAAAEPVTPTSKAGSGAPGG----TSKGPAE----ESRVRRHKHSSESPGRDKGKLSRLK 896
Query: 62 PEPGPRGVRRRRTGGLKPARVPGCAAAAAAVLEA 95
P P P G KP++ P AA AVL A
Sbjct: 897 PAPPPPPAASAGKAGGKPSQSPSQEAAGEAVLGA 930
>gi|62362412 c-abl oncogene 1, receptor tyrosine kinase isoform b
[Homo sapiens]
Length = 1149
Score = 37.0 bits (84), Expect = 0.003
Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 8/94 (8%)
Query: 2 PLALPPLGSGPQPGNGCCGGCWMVAATGPASPQQPEAWQRRQRNGEKTNNPPNGCLRRRP 61
P A P+ + G+G GG + GPA E+ RR ++ ++ G L R
Sbjct: 864 PAAAEPVTPTSKAGSGAPGG----TSKGPAE----ESRVRRHKHSSESPGRDKGKLSRLK 915
Query: 62 PEPGPRGVRRRRTGGLKPARVPGCAAAAAAVLEA 95
P P P G KP++ P AA AVL A
Sbjct: 916 PAPPPPPAASAGKAGGKPSQSPSQEAAGEAVLGA 949
>gi|25777612 proteasome 26S non-ATPase subunit 3 [Homo sapiens]
Length = 534
Score = 35.8 bits (81), Expect = 0.008
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 42 RQRNGEKTNNPPNGCLRRRPPEPGPRGVRRRR---TGGLKPARVPGCAAAAAA 91
R+R +K PP G + PP P P+ V + TGG G AAAAA
Sbjct: 8 RRRGADKAKPPPGGGEQEPPPPPAPQDVEMKEEAATGGGSTGEADGKTAAAAA 60
>gi|239752488 PREDICTED: FLJ40296 protein family member [Homo
sapiens]
Length = 221
Score = 34.3 bits (77), Expect = 0.022
Identities = 29/79 (36%), Positives = 32/79 (40%), Gaps = 15/79 (18%)
Query: 11 GPQPGNGCCGGC--WMVAATGPASPQQPE---AWQRRQRNGEKTNNPPNGCLRRRPPEPG 65
GP P GCC V A GPA P QP A+ + R PP RP P
Sbjct: 21 GPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRR-----QPP-----ARPESPP 70
Query: 66 PRGVRRRRTGGLKPARVPG 84
P RRR G +P R G
Sbjct: 71 PAERGRRRGGSRRPGRGRG 89
>gi|38348198 proline rich 20 [Homo sapiens]
Length = 221
Score = 34.3 bits (77), Expect = 0.022
Identities = 29/79 (36%), Positives = 32/79 (40%), Gaps = 15/79 (18%)
Query: 11 GPQPGNGCCGGC--WMVAATGPASPQQPE---AWQRRQRNGEKTNNPPNGCLRRRPPEPG 65
GP P GCC V A GPA P QP A+ + R PP RP P
Sbjct: 21 GPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRR-----QPP-----ARPESPP 70
Query: 66 PRGVRRRRTGGLKPARVPG 84
P RRR G +P R G
Sbjct: 71 PAERGRRRGGSRRPGRGRG 89
>gi|194353955 hypothetical protein LOC729250 [Homo sapiens]
Length = 221
Score = 34.3 bits (77), Expect = 0.022
Identities = 29/79 (36%), Positives = 32/79 (40%), Gaps = 15/79 (18%)
Query: 11 GPQPGNGCCGGC--WMVAATGPASPQQPE---AWQRRQRNGEKTNNPPNGCLRRRPPEPG 65
GP P GCC V A GPA P QP A+ + R PP RP P
Sbjct: 21 GPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRR-----QPP-----ARPESPP 70
Query: 66 PRGVRRRRTGGLKPARVPG 84
P RRR G +P R G
Sbjct: 71 PAERGRRRGGSRRPGRGRG 89
>gi|194353953 hypothetical protein LOC729246 [Homo sapiens]
Length = 221
Score = 34.3 bits (77), Expect = 0.022
Identities = 29/79 (36%), Positives = 32/79 (40%), Gaps = 15/79 (18%)
Query: 11 GPQPGNGCCGGC--WMVAATGPASPQQPE---AWQRRQRNGEKTNNPPNGCLRRRPPEPG 65
GP P GCC V A GPA P QP A+ + R PP RP P
Sbjct: 21 GPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRR-----QPP-----ARPESPP 70
Query: 66 PRGVRRRRTGGLKPARVPG 84
P RRR G +P R G
Sbjct: 71 PAERGRRRGGSRRPGRGRG 89
>gi|194353951 hypothetical protein LOC729240 [Homo sapiens]
Length = 221
Score = 34.3 bits (77), Expect = 0.022
Identities = 29/79 (36%), Positives = 32/79 (40%), Gaps = 15/79 (18%)
Query: 11 GPQPGNGCCGGC--WMVAATGPASPQQPE---AWQRRQRNGEKTNNPPNGCLRRRPPEPG 65
GP P GCC V A GPA P QP A+ + R PP RP P
Sbjct: 21 GPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRR-----QPP-----ARPESPP 70
Query: 66 PRGVRRRRTGGLKPARVPG 84
P RRR G +P R G
Sbjct: 71 PAERGRRRGGSRRPGRGRG 89
>gi|194353949 hypothetical protein LOC729233 [Homo sapiens]
Length = 221
Score = 34.3 bits (77), Expect = 0.022
Identities = 29/79 (36%), Positives = 32/79 (40%), Gaps = 15/79 (18%)
Query: 11 GPQPGNGCCGGC--WMVAATGPASPQQPE---AWQRRQRNGEKTNNPPNGCLRRRPPEPG 65
GP P GCC V A GPA P QP A+ + R PP RP P
Sbjct: 21 GPPPEPGCCVADPEGSVEADGPAQPAQPAKPIAYVKPFRR-----QPP-----ARPESPP 70
Query: 66 PRGVRRRRTGGLKPARVPG 84
P RRR G +P R G
Sbjct: 71 PAERGRRRGGSRRPGRGRG 89
>gi|16579828 zinc finger protein 91 [Homo sapiens]
Length = 570
Score = 33.5 bits (75), Expect = 0.038
Identities = 31/81 (38%), Positives = 36/81 (44%), Gaps = 9/81 (11%)
Query: 33 PQQPEAWQRRQRNGEKTNNPPNGCLRRRPPEP---GPRGVRRRRT--GGLKPARVPGCAA 87
P+ PE Q+ Q GE P ++RPPE P G R GG R AA
Sbjct: 8 PRPPE--QQDQEGGEAAKAAPEEP-QQRPPEAVAAAPAGTTSSRVLRGGRDRGRA-AAAA 63
Query: 88 AAAAVLEAVEGERPTLRRSQP 108
AAAAV + E P RRS P
Sbjct: 64 AAAAVSRRRKAEYPRRRRSSP 84
>gi|67782346 lysyl oxidase-like 1 preproprotein [Homo sapiens]
Length = 574
Score = 32.7 bits (73), Expect = 0.064
Identities = 25/77 (32%), Positives = 29/77 (37%), Gaps = 7/77 (9%)
Query: 15 GNGCCGGCWMVAATGPASPQQPEAWQRRQRNGEK-TNNPPNGCLRR------RPPEPGPR 67
G G G VA+ G P QP A GE+ PP G PP P P
Sbjct: 209 GGGVGAGAAAVASAGVIYPYQPRARYEEYGGGEELPEYPPQGFYPAPERPYVPPPPPPPD 268
Query: 68 GVRRRRTGGLKPARVPG 84
G+ RR + L PG
Sbjct: 269 GLDRRYSHSLYSEGTPG 285
>gi|122937187 glycosyltransferase 8 domain containing 4 [Homo
sapiens]
Length = 443
Score = 32.7 bits (73), Expect = 0.064
Identities = 27/75 (36%), Positives = 31/75 (41%), Gaps = 8/75 (10%)
Query: 27 ATGPASPQQPEAWQRRQRNGEKTNNPPNGCL--------RRRPPEPGPRGVRRRRTGGLK 78
A PA P +P + +R P G L RRRPP P PR RR K
Sbjct: 30 AEPPALPARPASAPQRHPAPVPARWPGPGALPGASPGVRRRRPPRPRPRAGRRGAARLEK 89
Query: 79 PARVPGCAAAAAAVL 93
AR PG + AVL
Sbjct: 90 LARRPGEPRSFQAVL 104
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 32.3 bits (72), Expect = 0.084
Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 15/73 (20%)
Query: 2 PLALPPLGSGPQPGNGCCGGCWMVAATGPASPQQPEAWQRRQRNGEKTNNPPNGCLRRRP 61
P A PP PQ G + +GPA P+ A PP G R+ P
Sbjct: 544 PAARPPASPSPQRQAGPPQATRQTSVSGPAPPKASGA-------------PPGGQQRQGP 590
Query: 62 PE--PGPRGVRRR 72
P+ PGP G R+
Sbjct: 591 PQKPPGPAGPTRQ 603
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 32.3 bits (72), Expect = 0.084
Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 15/73 (20%)
Query: 2 PLALPPLGSGPQPGNGCCGGCWMVAATGPASPQQPEAWQRRQRNGEKTNNPPNGCLRRRP 61
P A PP PQ G + +GPA P+ A PP G R+ P
Sbjct: 544 PAARPPASPSPQRQAGPPQATRQTSVSGPAPPKASGA-------------PPGGQQRQGP 590
Query: 62 PE--PGPRGVRRR 72
P+ PGP G R+
Sbjct: 591 PQKPPGPAGPTRQ 603
>gi|58219030 hypothetical protein LOC399726 [Homo sapiens]
Length = 136
Score = 32.0 bits (71), Expect = 0.11
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 34 QQPEAWQRRQRN-GEKTNNPPNGCLRRRP--PEPGPRGVRRRRTGGLKPARVPGCAAAAA 90
++P W+ +R G + P R P P RG TG +P +VPG +AAAA
Sbjct: 4 REPSGWRTAERRRGWRCRGVPTPSGDRGPGAARPAARGGAGETTGQQRPLQVPGASAAAA 63
>gi|169167101 PREDICTED: hypothetical protein [Homo sapiens]
Length = 131
Score = 31.6 bits (70), Expect = 0.14
Identities = 22/87 (25%), Positives = 35/87 (40%)
Query: 23 WMVAATGPASPQQPEAWQRRQRNGEKTNNPPNGCLRRRPPEPGPRGVRRRRTGGLKPARV 82
W ++ SP++P + + + E+ G R P G+ + L P
Sbjct: 39 WEPSSDPKRSPRRPASTPKVLLHREQKQETDQGGPDDRTPMGPTLGLPQAPLVDLFPPAA 98
Query: 83 PGCAAAAAAVLEAVEGERPTLRRSQPW 109
GCAAAAAA + P + S P+
Sbjct: 99 SGCAAAAAAATSSTAAPVPAVAASPPF 125
>gi|239750586 PREDICTED: hypothetical protein XP_002347439 [Homo
sapiens]
Length = 300
Score = 31.6 bits (70), Expect = 0.14
Identities = 30/80 (37%), Positives = 33/80 (41%), Gaps = 10/80 (12%)
Query: 5 LPPLGSGPQPGNGCCGGCWMVAATGPASPQQPEAWQRRQRNGEKTNNPPNG--CLRRRPP 62
LPP G + G CGG A GP QP A R G + PP G LRR
Sbjct: 7 LPPHGGRLRVGPCECGGGAAEAGRGPRQRFQPPAAASLPRIG---SAPPGGGRALRR--- 60
Query: 63 EPGPRGVRRRRTGGLKPARV 82
G RG RR+ PA V
Sbjct: 61 --GGRGAARRKRKRRAPAPV 78
>gi|239744883 PREDICTED: hypothetical protein XP_002344274 [Homo
sapiens]
Length = 300
Score = 31.6 bits (70), Expect = 0.14
Identities = 30/80 (37%), Positives = 33/80 (41%), Gaps = 10/80 (12%)
Query: 5 LPPLGSGPQPGNGCCGGCWMVAATGPASPQQPEAWQRRQRNGEKTNNPPNG--CLRRRPP 62
LPP G + G CGG A GP QP A R G + PP G LRR
Sbjct: 7 LPPHGGRLRVGPCECGGGAAEAGRGPRQRFQPPAAASLPRIG---SAPPGGGRALRR--- 60
Query: 63 EPGPRGVRRRRTGGLKPARV 82
G RG RR+ PA V
Sbjct: 61 --GGRGAARRKRKRRAPAPV 78
>gi|41281907 StAR-related lipid transfer (START) domain containing
13 isoform beta [Homo sapiens]
Length = 1105
Score = 31.6 bits (70), Expect = 0.14
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Query: 11 GPQPGNGCCGGCWMVAATGPASPQQPEAWQRRQ----RNGEKTNNPPNGCLRRRP 61
G G+G GG + +GP Q+PE+++ Q NG+ N+PP C + P
Sbjct: 265 GRHKGSGRTGG---LVISGPMLQQEPESFKAMQCIQIPNGDLQNSPPPACRKGLP 316
>gi|16445031 StAR-related lipid transfer (START) domain containing
13 isoform gamma [Homo sapiens]
Length = 995
Score = 31.6 bits (70), Expect = 0.14
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Query: 11 GPQPGNGCCGGCWMVAATGPASPQQPEAWQRRQ----RNGEKTNNPPNGCLRRRP 61
G G+G GG + +GP Q+PE+++ Q NG+ N+PP C + P
Sbjct: 155 GRHKGSGRTGG---LVISGPMLQQEPESFKAMQCIQIPNGDLQNSPPPACRKGLP 206
>gi|41281898 StAR-related lipid transfer (START) domain containing
13 isoform alpha [Homo sapiens]
Length = 1113
Score = 31.6 bits (70), Expect = 0.14
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Query: 11 GPQPGNGCCGGCWMVAATGPASPQQPEAWQRRQ----RNGEKTNNPPNGCLRRRP 61
G G+G GG + +GP Q+PE+++ Q NG+ N+PP C + P
Sbjct: 273 GRHKGSGRTGG---LVISGPMLQQEPESFKAMQCIQIPNGDLQNSPPPACRKGLP 324
>gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3
preproprotein [Homo sapiens]
Length = 178
Score = 31.6 bits (70), Expect = 0.14
Identities = 27/87 (31%), Positives = 33/87 (37%), Gaps = 11/87 (12%)
Query: 2 PLALPPLGSGPQPGNGCCGGCWMVAATGPASPQQPEAWQRRQRNGEKTNNPP-----NGC 56
P PP G PQ G A + P PQ P Q+ G PP N
Sbjct: 97 PQGPPPQGGKPQGPPAQGGSKSQSARSPPGKPQGPP-----QQEGNNPQGPPPPAGGNPQ 151
Query: 57 LRRRPPEPGPRGVRRRRTGGLKPARVP 83
+ PP P+G R GG +P+R P
Sbjct: 152 QPQAPPAGQPQGPPRPPQGG-RPSRPP 177
Score = 25.8 bits (55), Expect = 7.8
Identities = 23/77 (29%), Positives = 29/77 (37%), Gaps = 1/77 (1%)
Query: 7 PLGSGPQPGNGCCGGCWMVAATGPASPQQPEAWQRRQRNGEKTNNPPNGCLRRRPPEPGP 66
P G PQ GN G GP PQ ++ R G+ PP G + PP G
Sbjct: 57 PQGPPPQGGNKPQGPPPPGKPQGPP-PQGDKSRSPRSPPGKPQGPPPQGGKPQGPPAQGG 115
Query: 67 RGVRRRRTGGLKPARVP 83
+ R+ KP P
Sbjct: 116 SKSQSARSPPGKPQGPP 132
>gi|169201741 PREDICTED: hypothetical protein [Homo sapiens]
Length = 173
Score = 31.2 bits (69), Expect = 0.19
Identities = 27/84 (32%), Positives = 33/84 (39%), Gaps = 23/84 (27%)
Query: 2 PLALPPLGSGPQP--GNGCCGGCWMVAATGPASPQQPEAWQRRQRNGEKTNNPPNG---- 55
P A+P GS +P G GCC A G + W+R +R G T P G
Sbjct: 95 PGAIPAAGSRGEPAGGRGCC------TAEGSSCGHP---WRRERRQGAATRGPSRGPGGE 145
Query: 56 ---CLR-----RRPPEPGPRGVRR 71
C+R RP G RG R
Sbjct: 146 RRVCVRASVAGARPSVAGVRGSAR 169
>gi|169201345 PREDICTED: hypothetical protein [Homo sapiens]
Length = 173
Score = 31.2 bits (69), Expect = 0.19
Identities = 27/84 (32%), Positives = 33/84 (39%), Gaps = 23/84 (27%)
Query: 2 PLALPPLGSGPQP--GNGCCGGCWMVAATGPASPQQPEAWQRRQRNGEKTNNPPNG---- 55
P A+P GS +P G GCC A G + W+R +R G T P G
Sbjct: 95 PGAIPAAGSRGEPAGGRGCC------TAEGSSCGHP---WRRERRQGAATRGPSRGPGGE 145
Query: 56 ---CLR-----RRPPEPGPRGVRR 71
C+R RP G RG R
Sbjct: 146 RRVCVRASVAGARPSVAGVRGSAR 169
>gi|169188544 PREDICTED: hypothetical protein [Homo sapiens]
Length = 173
Score = 31.2 bits (69), Expect = 0.19
Identities = 27/84 (32%), Positives = 33/84 (39%), Gaps = 23/84 (27%)
Query: 2 PLALPPLGSGPQP--GNGCCGGCWMVAATGPASPQQPEAWQRRQRNGEKTNNPPNG---- 55
P A+P GS +P G GCC A G + W+R +R G T P G
Sbjct: 95 PGAIPAAGSRGEPAGGRGCC------TAEGSSCGHP---WRRERRQGAATRGPSRGPGGE 145
Query: 56 ---CLR-----RRPPEPGPRGVRR 71
C+R RP G RG R
Sbjct: 146 RRVCVRASVAGARPSVAGVRGSAR 169
>gi|115511036 alpha-kinase 3 [Homo sapiens]
Length = 1907
Score = 31.2 bits (69), Expect = 0.19
Identities = 37/109 (33%), Positives = 42/109 (38%), Gaps = 17/109 (15%)
Query: 9 GSGPQPGNGCCGGCWMVAATGPASPQQPEAWQRRQRNGEKTNNPPNGCLRRRPPEPGPRG 68
GSG G G G W A G + P+ P R R GE RPP RG
Sbjct: 116 GSGLGAGPGA--GTWAPAPPGVSKPRCPG----RARPGEGQQQVTTA----RPPAIN-RG 164
Query: 69 VRRRRTGGLKPARVPGCAA-----AAAAVLEAV-EGERPTLRRSQPWKW 111
R+ R G R PG A AAA+ AV EG RR+ W
Sbjct: 165 ARQPRAGAAAAGRGPGAGAWRTGEAAASAGPAVGEGGAMGSRRAPSRGW 213
>gi|50080156 hypothetical protein LOC286223 isoform 1 [Homo sapiens]
Length = 202
Score = 31.2 bits (69), Expect = 0.19
Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 5/74 (6%)
Query: 21 GCWMVAATGPASPQQPEAWQRRQRNGEKTNNPPNGCLRRRPPEPG----PRGVRRRRTGG 76
G W +SP + + W+ G K P G LR R P PG G RRR
Sbjct: 47 GLWAPGFCTWSSPDEDKVWRPAWEQGPKGEPDPRG-LRPRKPVPGTGNRDSGTRRRLQDA 105
Query: 77 LKPARVPGCAAAAA 90
+ PG A+A
Sbjct: 106 TEQDPRPGNDVASA 119
>gi|139394604 bromo adjacent homology domain containing 1 [Homo
sapiens]
Length = 780
Score = 31.2 bits (69), Expect = 0.19
Identities = 25/90 (27%), Positives = 33/90 (36%), Gaps = 13/90 (14%)
Query: 25 VAATGPASPQQPEAWQRRQRNGEKTNNPPNGCLRRRPPEP--------GPRGVRRRRTGG 76
VA P S + P + R G + RRP P PR RRRRT G
Sbjct: 531 VARACPQSAKPPSGSKSGLRTGSSCRHTARSKAARRPSHPKQPRVQRPRPRRRRRRRTNG 590
Query: 77 LKPARVPGCAAAAAAVLEAVEGERPTLRRS 106
P AA + ++ P +R+S
Sbjct: 591 WVPV-----GAACEKAVYVLDEPEPAIRKS 615
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.137 0.473
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,139,732
Number of Sequences: 37866
Number of extensions: 458145
Number of successful extensions: 2566
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 223
Number of HSP's that attempted gapping in prelim test: 2338
Number of HSP's gapped (non-prelim): 450
length of query: 111
length of database: 18,247,518
effective HSP length: 81
effective length of query: 30
effective length of database: 15,180,372
effective search space: 455411160
effective search space used: 455411160
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.