Guide to the Human Genome
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Name: C10orf114 Sequence: fasta or formatted (136aa) NCBI GI: 58219030
Description:

hypothetical protein LOC399726

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.8         16           4
 C cysteine            4.4          6           2
 D aspartate           5.9          8           1
 E glutamate           3.7          5           1
 F phenylalanine       2.9          4           2
 G glycine            11.0         15           2
 H histidine           1.5          2           2
 I isoleucine          1.5          2           1
 K lysine              0.0          0           0
 L leucine             5.1          7           2
 M methionine          0.7          1           1
 N asparagine          0.0          0           0
 P proline            11.8         16           1
 Q glutamine           3.7          5           2
 R arginine           17.6         24           3
 S serine              7.4         10           1
 T threonine           5.9          8           2
 V valine              2.2          3           1
 W tryptophan          2.2          3           1
 Y tyrosine            0.7          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC399726 
LOC100134017          0.052   PREDICTED: hypothetical protein 
LOC729370             0.049   PREDICTED: hypothetical protein 
CDT1                  0.045   chromatin licensing and DNA replication factor 1 [H...
ZNF469                0.041   zinc finger protein 469 
LOC100293492          0.041   PREDICTED: hypothetical protein 
LOC729162             0.041   PREDICTED: similar to hCG1981372 
LOC729162             0.041   PREDICTED: similar to hCG1981372 
LOC100127930          0.037   PREDICTED: hypothetical protein 
DCAF10                0.037   WD repeat domain 32 
FBF1                  0.034   Fas (TNFRSF6) binding factor 1 
LOC100293408          0.030   PREDICTED: hypothetical protein 
LOC100293486          0.030   PREDICTED: similar to hCG2041452 
LOC100289362          0.030   PREDICTED: hypothetical protein 
LOC100291379          0.030   PREDICTED: hypothetical protein XP_002346556 
LOC100289362          0.030   PREDICTED: hypothetical protein XP_002343719 
LOC100288960          0.030   PREDICTED: hypothetical protein XP_002342392 
JMY                   0.030   junction-mediating and regulatory protein 
ZNF710                0.030   zinc finger protein 710 
FOXD2                 0.030   forkhead box D2 
ANKRD56               0.030   ankyrin repeat domain 56 
CRAMP1L               0.026   Crm, cramped-like 
LOC100293375          0.026   PREDICTED: hypothetical protein 
SFRS7                 0.026   splicing factor, arginine/serine-rich 7 
C9orf75               0.026   hypothetical protein LOC286262 isoform 2 
C9orf75               0.026   hypothetical protein LOC286262 isoform 1 
LOC100291860          0.026   PREDICTED: hypothetical protein XP_002344548 
LOC100290144          0.026   PREDICTED: hypothetical protein XP_002347189 
LOC100290274          0.026   PREDICTED: hypothetical protein XP_002346984 
LOC100288645          0.026   PREDICTED: hypothetical protein XP_002342846 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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