Guide to the Human Genome
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Search of human proteins with 239755215

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239755215 PREDICTED: similar to hCG2022304 [Homo sapiens]
         (117 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239755215 PREDICTED: similar to hCG2022304 [Homo sapiens]          245   5e-66
gi|239743970 PREDICTED: hypothetical protein XP_002344248 [Homo ...   245   5e-66
gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo ...    34   0.028
gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo ...    34   0.028
gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]            34   0.028
gi|22035569 GC-rich sequence DNA-binding factor candidate isofor...    33   0.037
gi|22035565 GC-rich sequence DNA-binding factor candidate isofor...    33   0.037
gi|169217659 PREDICTED: similar to ectonucleotide pyrophosphatas...    33   0.063
gi|239754797 PREDICTED: hypothetical protein [Homo sapiens]            33   0.063
gi|169167316 PREDICTED: similar to ectonucleotide pyrophosphatas...    33   0.063
gi|239743415 PREDICTED: hypothetical protein [Homo sapiens]            33   0.063
gi|239753382 PREDICTED: hypothetical protein [Homo sapiens]            32   0.11 
gi|239747949 PREDICTED: hypothetical protein XP_002346484 [Homo ...    32   0.11 
gi|239741844 PREDICTED: hypothetical protein XP_002342324 [Homo ...    32   0.11 
gi|145580584 uromodulin-like 1 isoform 1 precursor [Homo sapiens]      32   0.11 
gi|145580582 uromodulin-like 1 isoform 2 precursor [Homo sapiens]      32   0.11 
gi|239749325 PREDICTED: hypothetical protein [Homo sapiens]            32   0.14 
gi|239509122 PREDICTED: hypothetical protein [Homo sapiens]            32   0.14 
gi|11761629 fibrinogen, alpha polypeptide isoform alpha prepropr...    31   0.18 
gi|4503689 fibrinogen, alpha polypeptide isoform alpha-E preprop...    31   0.18 
gi|239754438 PREDICTED: hypothetical protein [Homo sapiens]            31   0.24 
gi|239748928 PREDICTED: hypothetical protein XP_002346859 [Homo ...    31   0.24 
gi|239742950 PREDICTED: hypothetical protein XP_002342702 [Homo ...    31   0.24 
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]          31   0.24 
gi|23238194 tumor necrosis factor receptor superfamily, member 1...    31   0.24 
gi|145199237 transcription elongation factor B polypeptide 3 bin...    31   0.24 
gi|122937187 glycosyltransferase 8 domain containing 4 [Homo sap...    31   0.24 
gi|239757743 PREDICTED: hypothetical protein [Homo sapiens]            30   0.31 
gi|169214080 PREDICTED: hypothetical protein LOC646862 [Homo sap...    30   0.31 
gi|169201741 PREDICTED: hypothetical protein [Homo sapiens]            30   0.31 

>gi|239755215 PREDICTED: similar to hCG2022304 [Homo sapiens]
          Length = 117

 Score =  245 bits (626), Expect = 5e-66
 Identities = 117/117 (100%), Positives = 117/117 (100%)

Query: 1   MGLELGFSRLLSSGCTDFAHALTGDADTRDPGRRPGGAAMLAESPSVPRLGSGTRGAGME 60
           MGLELGFSRLLSSGCTDFAHALTGDADTRDPGRRPGGAAMLAESPSVPRLGSGTRGAGME
Sbjct: 1   MGLELGFSRLLSSGCTDFAHALTGDADTRDPGRRPGGAAMLAESPSVPRLGSGTRGAGME 60

Query: 61  LGCPWAPSWAGAHPGRVVTGKKPRASPRRGGRGKDRTLPKSRTRPGGTRAGVAATPS 117
           LGCPWAPSWAGAHPGRVVTGKKPRASPRRGGRGKDRTLPKSRTRPGGTRAGVAATPS
Sbjct: 61  LGCPWAPSWAGAHPGRVVTGKKPRASPRRGGRGKDRTLPKSRTRPGGTRAGVAATPS 117


>gi|239743970 PREDICTED: hypothetical protein XP_002344248 [Homo
           sapiens]
          Length = 117

 Score =  245 bits (626), Expect = 5e-66
 Identities = 117/117 (100%), Positives = 117/117 (100%)

Query: 1   MGLELGFSRLLSSGCTDFAHALTGDADTRDPGRRPGGAAMLAESPSVPRLGSGTRGAGME 60
           MGLELGFSRLLSSGCTDFAHALTGDADTRDPGRRPGGAAMLAESPSVPRLGSGTRGAGME
Sbjct: 1   MGLELGFSRLLSSGCTDFAHALTGDADTRDPGRRPGGAAMLAESPSVPRLGSGTRGAGME 60

Query: 61  LGCPWAPSWAGAHPGRVVTGKKPRASPRRGGRGKDRTLPKSRTRPGGTRAGVAATPS 117
           LGCPWAPSWAGAHPGRVVTGKKPRASPRRGGRGKDRTLPKSRTRPGGTRAGVAATPS
Sbjct: 61  LGCPWAPSWAGAHPGRVVTGKKPRASPRRGGRGKDRTLPKSRTRPGGTRAGVAATPS 117


>gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo
           sapiens]
          Length = 384

 Score = 33.9 bits (76), Expect = 0.028
 Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 20/102 (19%)

Query: 31  PGRRPG-GAAMLAESPSVPRL--------------GSGTRGAGME-LGCPWAPSWAGAHP 74
           PG RPG  +A  + +P+ P+               G G+RG G + +G    PS AG  P
Sbjct: 124 PGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGA--RPSRAGGQP 181

Query: 75  GRVVTGKKPRASPRRGGRGKDRTLPKSRTRPG-GTRAGVAAT 115
             + T ++ RA+PRR  R   R     ++RPG GT A    T
Sbjct: 182 PPL-TCRRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGT 222


>gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo
           sapiens]
          Length = 384

 Score = 33.9 bits (76), Expect = 0.028
 Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 20/102 (19%)

Query: 31  PGRRPG-GAAMLAESPSVPRL--------------GSGTRGAGME-LGCPWAPSWAGAHP 74
           PG RPG  +A  + +P+ P+               G G+RG G + +G    PS AG  P
Sbjct: 124 PGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGA--RPSRAGGQP 181

Query: 75  GRVVTGKKPRASPRRGGRGKDRTLPKSRTRPG-GTRAGVAAT 115
             + T ++ RA+PRR  R   R     ++RPG GT A    T
Sbjct: 182 PPL-TCRRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGT 222


>gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 384

 Score = 33.9 bits (76), Expect = 0.028
 Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 20/102 (19%)

Query: 31  PGRRPG-GAAMLAESPSVPRL--------------GSGTRGAGME-LGCPWAPSWAGAHP 74
           PG RPG  +A  + +P+ P+               G G+RG G + +G    PS AG  P
Sbjct: 124 PGPRPGCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGA--RPSRAGGQP 181

Query: 75  GRVVTGKKPRASPRRGGRGKDRTLPKSRTRPG-GTRAGVAAT 115
             + T ++ RA+PRR  R   R     ++RPG GT A    T
Sbjct: 182 PPL-TCRRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGT 222


>gi|22035569 GC-rich sequence DNA-binding factor candidate isoform
          2 [Homo sapiens]
          Length = 815

 Score = 33.5 bits (75), Expect = 0.037
 Identities = 26/68 (38%), Positives = 31/68 (45%), Gaps = 11/68 (16%)

Query: 24 GDADTRDPG---RRPGGAAMLAESPSVPRLGSGTRGAGMELGCPWAPSWAGAHPGRVVTG 80
          G  +   PG   R PGG ++L   PS P   + T G G E G  +     GA PG    G
Sbjct: 37 GTGEEAGPGGGDRAPGGESLLGPGPSPP--SALTPGLGAEAGGGFP---GGAEPG---NG 88

Query: 81 KKPRASPR 88
           KPR  PR
Sbjct: 89 LKPRKRPR 96


>gi|22035565 GC-rich sequence DNA-binding factor candidate isoform
          1 [Homo sapiens]
          Length = 917

 Score = 33.5 bits (75), Expect = 0.037
 Identities = 26/68 (38%), Positives = 31/68 (45%), Gaps = 11/68 (16%)

Query: 24 GDADTRDPG---RRPGGAAMLAESPSVPRLGSGTRGAGMELGCPWAPSWAGAHPGRVVTG 80
          G  +   PG   R PGG ++L   PS P   + T G G E G  +     GA PG    G
Sbjct: 37 GTGEEAGPGGGDRAPGGESLLGPGPSPP--SALTPGLGAEAGGGFP---GGAEPG---NG 88

Query: 81 KKPRASPR 88
           KPR  PR
Sbjct: 89 LKPRKRPR 96


>gi|169217659 PREDICTED: similar to ectonucleotide
           pyrophosphatase/phosphodiesterase 5 [Homo sapiens]
          Length = 542

 Score = 32.7 bits (73), Expect = 0.063
 Identities = 14/26 (53%), Positives = 17/26 (65%)

Query: 31  PGRRPGGAAMLAESPSVPRLGSGTRG 56
           PG RP G A +A +PS PR G G+ G
Sbjct: 493 PGPRPWGLARVARTPSAPRAGGGSWG 518


>gi|239754797 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 170

 Score = 32.7 bits (73), Expect = 0.063
 Identities = 33/102 (32%), Positives = 40/102 (39%), Gaps = 19/102 (18%)

Query: 32  GRRPGGAAMLAESPSVPRLGSGTRGAGMELGCPWAPSWAGAHPGRVVT------------ 79
           GR+ GG         +P LG   RGAG            GA P  VV             
Sbjct: 33  GRQQGGPGH-GNVDHLPNLGRQPRGAGSRGASAPRAVRTGAAPEVVVQSGHRSHASKRRF 91

Query: 80  ---GKKP--RASPRRGGRGKDRTLPKSRTRPGGTRAGVAATP 116
              G+ P  R S RR G GK+ + P +   PGG RAG+   P
Sbjct: 92  LEEGEAPARRLSERRRGGGKEESRPGTAAAPGG-RAGLYGGP 132


>gi|169167316 PREDICTED: similar to ectonucleotide
           pyrophosphatase/phosphodiesterase 5 [Homo sapiens]
          Length = 542

 Score = 32.7 bits (73), Expect = 0.063
 Identities = 14/26 (53%), Positives = 17/26 (65%)

Query: 31  PGRRPGGAAMLAESPSVPRLGSGTRG 56
           PG RP G A +A +PS PR G G+ G
Sbjct: 493 PGPRPWGLARVARTPSAPRAGGGSWG 518


>gi|239743415 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 170

 Score = 32.7 bits (73), Expect = 0.063
 Identities = 33/102 (32%), Positives = 40/102 (39%), Gaps = 19/102 (18%)

Query: 32  GRRPGGAAMLAESPSVPRLGSGTRGAGMELGCPWAPSWAGAHPGRVVT------------ 79
           GR+ GG         +P LG   RGAG            GA P  VV             
Sbjct: 33  GRQQGGPGH-GNVDHLPNLGRQPRGAGSRGASAPRAVRTGAAPEVVVQSGHRSHASKRRF 91

Query: 80  ---GKKP--RASPRRGGRGKDRTLPKSRTRPGGTRAGVAATP 116
              G+ P  R S RR G GK+ + P +   PGG RAG+   P
Sbjct: 92  LEEGEAPARRLSERRRGGGKEESRPGTAAAPGG-RAGLYGGP 132


>gi|239753382 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 331

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 8/57 (14%)

Query: 28  TRDPGRRP--------GGAAMLAESPSVPRLGSGTRGAGMELGCPWAPSWAGAHPGR 76
           +R PG R         GGAA+   SP+ P LG    G G E  C    S A A P +
Sbjct: 260 SRPPGLRTLLSSALVRGGAALQGLSPAGPALGQQVLGRGTEPACRGPRSLAAAFPAK 316


>gi|239747949 PREDICTED: hypothetical protein XP_002346484 [Homo
           sapiens]
          Length = 331

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 8/57 (14%)

Query: 28  TRDPGRRP--------GGAAMLAESPSVPRLGSGTRGAGMELGCPWAPSWAGAHPGR 76
           +R PG R         GGAA+   SP+ P LG    G G E  C    S A A P +
Sbjct: 260 SRPPGLRTLLSSALVRGGAALQGLSPAGPALGQQVLGRGTEPACRGPRSLAAAFPAK 316


>gi|239741844 PREDICTED: hypothetical protein XP_002342324 [Homo
           sapiens]
          Length = 331

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 8/57 (14%)

Query: 28  TRDPGRRP--------GGAAMLAESPSVPRLGSGTRGAGMELGCPWAPSWAGAHPGR 76
           +R PG R         GGAA+   SP+ P LG    G G E  C    S A A P +
Sbjct: 260 SRPPGLRTLLSSALVRGGAALQGLSPAGPALGQQVLGRGTEPACRGPRSLAAAFPAK 316


>gi|145580584 uromodulin-like 1 isoform 1 precursor [Homo sapiens]
          Length = 1318

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 36  GGAAMLAESPSVPRLGSGTRGAGMELGCPWAPSWAGAHPGRVVTGK--KPRASPRRGG 91
           GG    A   +VP LG+GT   G+E     +PS  G   G    G+   P  SPRRGG
Sbjct: 560 GGGLSAATGVTVPGLGTGTAALGLE-NFTLSPS-PGYPQGTPAAGQAWTPEPSPRRGG 615


>gi|145580582 uromodulin-like 1 isoform 2 precursor [Homo sapiens]
          Length = 1446

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 36  GGAAMLAESPSVPRLGSGTRGAGMELGCPWAPSWAGAHPGRVVTGK--KPRASPRRGG 91
           GG    A   +VP LG+GT   G+E     +PS  G   G    G+   P  SPRRGG
Sbjct: 560 GGGLSAATGVTVPGLGTGTAALGLE-NFTLSPS-PGYPQGTPAAGQAWTPEPSPRRGG 615


>gi|239749325 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 155

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 32/98 (32%), Positives = 39/98 (39%), Gaps = 19/98 (19%)

Query: 32  GRRPGGAAMLAESPSVPRLGSGTRGAGMELGCPWAPSWAGAHPGRVVT------------ 79
           GR+ GG         +P LG   RGAG            GA P  VV             
Sbjct: 33  GRQQGGPGH-GNVDHLPNLGRQPRGAGSRGASAPRAVRTGAAPEVVVQSGHRSHASKRRF 91

Query: 80  ---GKKP--RASPRRGGRGKDRTLPKSRTRPGGTRAGV 112
              G+ P  R S RR G GK+ + P +   PGG RAG+
Sbjct: 92  LEEGEAPARRLSERRRGGGKEESRPGTAAAPGG-RAGL 128


>gi|239509122 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 155

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 32/98 (32%), Positives = 39/98 (39%), Gaps = 19/98 (19%)

Query: 32  GRRPGGAAMLAESPSVPRLGSGTRGAGMELGCPWAPSWAGAHPGRVVT------------ 79
           GR+ GG         +P LG   RGAG            GA P  VV             
Sbjct: 33  GRQQGGPGH-GNVDHLPNLGRQPRGAGSRGASAPRAVRTGAAPEVVVQSGHRSHASKRRF 91

Query: 80  ---GKKP--RASPRRGGRGKDRTLPKSRTRPGGTRAGV 112
              G+ P  R S RR G GK+ + P +   PGG RAG+
Sbjct: 92  LEEGEAPARRLSERRRGGGKEESRPGTAAAPGG-RAGL 128


>gi|11761629 fibrinogen, alpha polypeptide isoform alpha
           preproprotein [Homo sapiens]
          Length = 644

 Score = 31.2 bits (69), Expect = 0.18
 Identities = 28/89 (31%), Positives = 34/89 (38%), Gaps = 8/89 (8%)

Query: 21  ALTGDADTRDPGRRPGGAAMLAESPSVPRLGSGTRGAGMELGCPWAPSWAGA-HPGRVVT 79
           ALT     R    RPGG         + R GS + G G E   P  PS AG+ + G    
Sbjct: 250 ALTDMPQMRMELERPGGN-------EITRGGSTSYGTGSETESPRNPSSAGSWNSGSSGP 302

Query: 80  GKKPRASPRRGGRGKDRTLPKSRTRPGGT 108
           G     +P   G G   T     + PG T
Sbjct: 303 GSTGNRNPGSSGTGGTATWKPGSSGPGST 331


>gi|4503689 fibrinogen, alpha polypeptide isoform alpha-E
           preproprotein [Homo sapiens]
          Length = 866

 Score = 31.2 bits (69), Expect = 0.18
 Identities = 28/89 (31%), Positives = 34/89 (38%), Gaps = 8/89 (8%)

Query: 21  ALTGDADTRDPGRRPGGAAMLAESPSVPRLGSGTRGAGMELGCPWAPSWAGA-HPGRVVT 79
           ALT     R    RPGG         + R GS + G G E   P  PS AG+ + G    
Sbjct: 250 ALTDMPQMRMELERPGGN-------EITRGGSTSYGTGSETESPRNPSSAGSWNSGSSGP 302

Query: 80  GKKPRASPRRGGRGKDRTLPKSRTRPGGT 108
           G     +P   G G   T     + PG T
Sbjct: 303 GSTGNRNPGSSGTGGTATWKPGSSGPGST 331


>gi|239754438 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 709

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 24/66 (36%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 51  GSGTRGAGMELGCPWAPSWAG-AHP-GRVVTGKKPRASPRRGGRGKDRTLPKSRTRPGGT 108
           G G R     LG      WAG  HP G  + G  P A+  RGG G + T P    R G +
Sbjct: 80  GDGPRRLLPALGRSALGDWAGIGHPLGWGLLGGSPGAAGGRGGHGLEGTAPALPLRGGRS 139

Query: 109 RAGVAA 114
           R  + A
Sbjct: 140 RGWLFA 145


>gi|239748928 PREDICTED: hypothetical protein XP_002346859 [Homo
           sapiens]
          Length = 709

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 24/66 (36%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 51  GSGTRGAGMELGCPWAPSWAG-AHP-GRVVTGKKPRASPRRGGRGKDRTLPKSRTRPGGT 108
           G G R     LG      WAG  HP G  + G  P A+  RGG G + T P    R G +
Sbjct: 80  GDGPRRLLPALGRSALGDWAGIGHPLGWGLLGGSPGAAGGRGGHGLEGTAPALPLRGGRS 139

Query: 109 RAGVAA 114
           R  + A
Sbjct: 140 RGWLFA 145


>gi|239742950 PREDICTED: hypothetical protein XP_002342702 [Homo
           sapiens]
          Length = 709

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 24/66 (36%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 51  GSGTRGAGMELGCPWAPSWAG-AHP-GRVVTGKKPRASPRRGGRGKDRTLPKSRTRPGGT 108
           G G R     LG      WAG  HP G  + G  P A+  RGG G + T P    R G +
Sbjct: 80  GDGPRRLLPALGRSALGDWAGIGHPLGWGLLGGSPGAAGGRGGHGLEGTAPALPLRGGRS 139

Query: 109 RAGVAA 114
           R  + A
Sbjct: 140 RGWLFA 145


>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
          Length = 2944

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 27/73 (36%), Positives = 32/73 (43%), Gaps = 9/73 (12%)

Query: 25   DADTRDPGR--RPG--GAAMLAESPSVPRLGSGTRGAGMELGCPWAPSWAGAHPGRVVTG 80
            D     PGR   PG  GA  L  SP +P    G RG   E G P  P      PG+V+ G
Sbjct: 1304 DGRPGSPGRAGNPGTPGAPGLKGSPGLP----GPRGDPGERG-PRGPKGEPGAPGQVIGG 1358

Query: 81   KKPRASPRRGGRG 93
            + P    R+G  G
Sbjct: 1359 EGPGLPGRKGDPG 1371



 Score = 26.6 bits (57), Expect = 4.5
 Identities = 28/88 (31%), Positives = 33/88 (37%), Gaps = 25/88 (28%)

Query: 30   DPGRRPGGAAMLAESPSVPRLGSGTRGAGMELGCPW----------------------AP 67
            DPG  P GA  LA  P+ P+  SG +G   E G P                        P
Sbjct: 2184 DPG--PPGAPGLA-GPAGPQGPSGLKGEPGETGPPGRGLTGPTGAVGLPGPPGPSGLVGP 2240

Query: 68   SWAGAHPGRVVTGKKPRASPRRGGRGKD 95
              +   PG+V    KP A  R G  GKD
Sbjct: 2241 QGSPGLPGQVGETGKPGAPGRDGASGKD 2268


>gi|23238194 tumor necrosis factor receptor superfamily, member 18
           isoform 2 precursor [Homo sapiens]
          Length = 255

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 22/81 (27%), Positives = 26/81 (32%), Gaps = 3/81 (3%)

Query: 30  DPGRRPGGAAMLAESPSVPRLGSGTRGAGMELGCPWAPSW---AGAHPGRVVTGKKPRAS 86
           +PGR PG     + SP  P+     R A      PW   W    G+            A 
Sbjct: 172 EPGRPPGPPTAASPSPGAPQAAGALRSALGRALLPWQQKWVQEGGSDQRPGPCSSAAAAG 231

Query: 87  PRRGGRGKDRTLPKSRTRPGG 107
           P R  R      P S   P G
Sbjct: 232 PCRRERETQSWPPSSLAGPDG 252


>gi|145199237 transcription elongation factor B polypeptide 3
           binding protein 1 [Homo sapiens]
          Length = 1221

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 5/44 (11%)

Query: 62  GCPWAPSWAGAHPGRVVTGKKPRASPRRGGRGKDRTLPKSRTRP 105
           GCP         P +  TG  P  S + G +GKD+T  K R RP
Sbjct: 369 GCP-----KEGKPKKKKTGAPPAPSCKDGAQGKDKTKDKGRGRP 407


>gi|122937187 glycosyltransferase 8 domain containing 4 [Homo
           sapiens]
          Length = 443

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 29/78 (37%), Positives = 35/78 (44%), Gaps = 5/78 (6%)

Query: 42  AESPSVP-RLGSGTRGAGMELGCPWAPSWA--GAHPGRVVTGKKPRASPRRGGRGKDRTL 98
           AE P++P R  S  +     +   W    A  GA PG V   + PR  PR G RG  R L
Sbjct: 30  AEPPALPARPASAPQRHPAPVPARWPGPGALPGASPG-VRRRRPPRPRPRAGRRGAAR-L 87

Query: 99  PKSRTRPGGTRAGVAATP 116
            K   RPG  R+  A  P
Sbjct: 88  EKLARRPGEPRSFQAVLP 105


>gi|239757743 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 235

 Score = 30.4 bits (67), Expect = 0.31
 Identities = 27/89 (30%), Positives = 35/89 (39%), Gaps = 13/89 (14%)

Query: 27  DTRDPGRRPGGAAMLAESPSVPRL--GSGTRGAGMELGCPWAPSWAGAHPG----RVVTG 80
           D  D GR   G A        PR   G GT G+  E        W G  PG    +++  
Sbjct: 129 DQHDVGRTGNGQASSQGQEEGPRCPHGHGTEGSYRETA-----GWDGTPPGPGHLQILER 183

Query: 81  KK--PRASPRRGGRGKDRTLPKSRTRPGG 107
           +   PR + R  GRG+       R+R GG
Sbjct: 184 RSDPPRLAVRAQGRGRKSLGADQRSRAGG 212


>gi|169214080 PREDICTED: hypothetical protein LOC646862 [Homo
           sapiens]
          Length = 329

 Score = 30.4 bits (67), Expect = 0.31
 Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 10/64 (15%)

Query: 62  GCPWAPSWA---------GAHPGRVVTGKKPRASPRRGGRGKDRTLPKSRTRPGGTRAGV 112
           G PWAP+W           A PG      +P A P       +RTL +      GT AG 
Sbjct: 255 GSPWAPAWTPRPTGPDLDTALPGTAEDALEPEAGPEDPAEA-ERTLDRRSDGTWGTEAGP 313

Query: 113 AATP 116
              P
Sbjct: 314 GWAP 317


>gi|169201741 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 173

 Score = 30.4 bits (67), Expect = 0.31
 Identities = 21/58 (36%), Positives = 23/58 (39%), Gaps = 5/58 (8%)

Query: 65  WAPSWAGAHPGRVVTGKKPRASPR--RGGRGKDRTLPKSRTRPG---GTRAGVAATPS 117
           WAP   G   G     +     PR  RGG G   TLP+     G   G  AG A  PS
Sbjct: 22  WAPGCTGIRKGDTNKARASSPPPRETRGGPGGALTLPRKPPGSGRWLGLAAGTATLPS 79


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.135    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,840,696
Number of Sequences: 37866
Number of extensions: 324826
Number of successful extensions: 1222
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 159
Number of HSP's that attempted gapping in prelim test: 1113
Number of HSP's gapped (non-prelim): 272
length of query: 117
length of database: 18,247,518
effective HSP length: 87
effective length of query: 30
effective length of database: 14,953,176
effective search space: 448595280
effective search space used: 448595280
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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