Guide to the Human Genome
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Name: LOC100290880 Sequence: fasta or formatted (331aa) NCBI GI: 239747949
Description:

PREDICTED: hypothetical protein XP_002346484

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.8         49           3
 C cysteine            4.8         16           1
 D aspartate           2.1          7           1
 E glutamate           5.1         17           2
 F phenylalanine       2.7          9           1
 G glycine            13.0         43           3
 H histidine           2.1          7           1
 I isoleucine          0.6          2           1
 K lysine              2.4          8           1
 L leucine             8.2         27           2
 M methionine          1.2          4           1
 N asparagine          1.8          6           2
 P proline            10.0         33           2
 Q glutamine           4.5         15           2
 R arginine            8.5         28           1
 S serine              9.7         32           2
 T threonine           3.0         10           2
 V valine              3.6         12           1
 W tryptophan          1.2          4           1
 Y tyrosine            0.6          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346484 
LOC100292514          1.000   PREDICTED: hypothetical protein 
LOC100288000          1.000   PREDICTED: hypothetical protein XP_002342324 
MARCKS                0.033   myristoylated alanine-rich protein kinase C substra...
LOC100293596          0.027   PREDICTED: similar to mucin 
APC2                  0.024   adenomatosis polyposis coli 2 
LOC100288496          0.021   PREDICTED: hypothetical protein XP_002342747 
TCOF1                 0.021   Treacher Collins-Franceschetti syndrome 1 isoform e...
TCOF1                 0.021   Treacher Collins-Franceschetti syndrome 1 isoform d...
TCOF1                 0.021   Treacher Collins-Franceschetti syndrome 1 isoform a ...
TCOF1                 0.021   Treacher Collins-Franceschetti syndrome 1 isoform c ...
LOC100134702          0.021   PREDICTED: similar to mucin 
PLXNC1                0.020   plexin C1 
ZMIZ2                 0.020   zinc finger, MIZ-type containing 2 isoform 1 
ZMIZ2                 0.020   zinc finger, MIZ-type containing 2 isoform 2 
COL1A1                0.020   alpha 1 type I collagen preproprotein 
LOC100287524          0.020   PREDICTED: hypothetical protein XP_002342307 
ZNRF2                 0.018   zinc finger/RING finger 2 
CCDC48                0.018   coiled-coil domain containing 48 
FLJ31945              0.018   PREDICTED: hypothetical protein 
FLJ31945              0.018   PREDICTED: hypothetical protein 
DGKI                  0.018   diacylglycerol kinase, iota 
ZBP1                  0.017   Z-DNA binding protein 1 isoform c 
ZBP1                  0.017   Z-DNA binding protein 1 isoform b 
ZBP1                  0.017   Z-DNA binding protein 1 isoform a 
LOC100292292          0.017   PREDICTED: hypothetical protein 
LOC729575             0.017   PREDICTED: hypothetical protein 
LOC100288110          0.017   PREDICTED: hypothetical protein 
LOC100291384          0.017   PREDICTED: hypothetical protein XP_002347156 
LOC100288110          0.017   PREDICTED: hypothetical protein XP_002343007 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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