Guide to the Human Genome
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Name: LOC100289341 Sequence: fasta or formatted (117aa) NCBI GI: 239743970
Description:

PREDICTED: hypothetical protein XP_002344248

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.0         14           2
 C cysteine            1.7          2           1
 D aspartate           4.3          5           1
 E glutamate           2.6          3           1
 F phenylalanine       1.7          2           1
 G glycine            17.9         21           2
 H histidine           1.7          2           1
 I isoleucine          0.0          0           0
 K lysine              3.4          4           2
 L leucine             7.7          9           2
 M methionine          2.6          3           1
 N asparagine          0.0          0           0
 P proline            10.3         12           1
 Q glutamine           0.0          0           0
 R arginine           12.8         15           2
 S serine              8.5         10           2
 T threonine           7.7          9           1
 V valine              3.4          4           2
 W tryptophan          1.7          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002344248 
LOC100293834          1.000   PREDICTED: similar to hCG2022304 
LOC100291634          0.041   PREDICTED: hypothetical protein XP_002346062 
LOC100287232          0.041   PREDICTED: hypothetical protein XP_002342816 
LOC100287232          0.041   PREDICTED: hypothetical protein 
C21orf66              0.036   GC-rich sequence DNA-binding factor candidate isofor...
C21orf66              0.036   GC-rich sequence DNA-binding factor candidate isofor...
LOC731551             0.036   PREDICTED: similar to ectonucleotide pyrophosphatas...
LOC100129810          0.036   PREDICTED: hypothetical protein 
LOC650354             0.036   PREDICTED: similar to ectonucleotide pyrophosphatas...
LOC100129810          0.036   PREDICTED: hypothetical protein 
LOC100292514          0.032   PREDICTED: hypothetical protein 
LOC100290880          0.032   PREDICTED: hypothetical protein XP_002346484 
LOC100288000          0.032   PREDICTED: hypothetical protein XP_002342324 
UMODL1                0.032   uromodulin-like 1 isoform 1 precursor 
UMODL1                0.032   uromodulin-like 1 isoform 2 precursor 
LOC100129810          0.032   PREDICTED: hypothetical protein 
LOC100129810          0.032   PREDICTED: hypothetical protein 
FGA                   0.027   fibrinogen, alpha polypeptide isoform alpha prepropr...
FGA                   0.027   fibrinogen, alpha polypeptide isoform alpha-E preprop...
LOC100293575          0.027   PREDICTED: hypothetical protein 
LOC100290681          0.027   PREDICTED: hypothetical protein XP_002346859 
LOC100287330          0.027   PREDICTED: hypothetical protein XP_002342702 
COL7A1                0.027   alpha 1 type VII collagen precursor 
TNFRSF18              0.027   tumor necrosis factor receptor superfamily, member 1...
REXO1                 0.027   transcription elongation factor B polypeptide 3 bin...
GLT8D4                0.027   glycosyltransferase 8 domain containing 4 
LOC100292402          0.023   PREDICTED: hypothetical protein 
LOC646862             0.023   PREDICTED: hypothetical protein LOC646862 
LOC100130255          0.023   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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