Guide to the Human Genome
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Name: LOC100292102 Sequence: fasta or formatted (207aa) NCBI GI: 239755097
Description:

PREDICTED: hypothetical protein XP_002346214

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         16           3
 C cysteine            3.4          7           1
 D aspartate           2.9          6           1
 E glutamate           3.9          8           2
 F phenylalanine       1.9          4           1
 G glycine             9.7         20           2
 H histidine           3.4          7           1
 I isoleucine          0.5          1           1
 K lysine              4.3          9           1
 L leucine             7.7         16           3
 M methionine          1.9          4           2
 N asparagine          1.4          3           1
 P proline            11.1         23           2
 Q glutamine           9.2         19           1
 R arginine            7.2         15           2
 S serine              7.2         15           1
 T threonine           6.3         13           1
 V valine              6.8         14           2
 W tryptophan          2.4          5           2
 Y tyrosine            1.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346214 
LOC100291247          1.000   PREDICTED: hypothetical protein XP_002347102 
LOC643355             0.034   PREDICTED: hypothetical protein 
ZFHX4                 0.019   zinc finger homeodomain 4 
ZNF469                0.017   zinc finger protein 469 
PLXNB3                0.014   plexin B3 isoform 2 
PLXNB3                0.014   plexin B3 isoform 1 
RPGR                  0.014   retinitis pigmentosa GTPase regulator isoform C [Hom...
KIAA1549              0.012   hypothetical protein LOC57670 
YARS                  0.012   tyrosyl-tRNA synthetase 
PRDM15                0.012   PR domain containing 15 isoform 2 
PRDM15                0.012   PR domain containing 15 isoform 1 
LUZP4                 0.010   leucine zipper protein 4 
E2F3                  0.010   E2F transcription factor 3 
NEURL4                0.010   neuralized homolog 4 isoform 1 
NEURL4                0.010   neuralized homolog 4 isoform 2 
SCRIB                 0.010   scribble isoform b 
SCRIB                 0.010   scribble isoform a 
LOC100134283          0.007   PREDICTED: hypothetical protein 
ATXN2                 0.007   ataxin 2 
ATF6                  0.007   activating transcription factor 6 
PPP1R15A              0.007   protein phosphatase 1, regulatory subunit 15A [Homo...
MED12L                0.007   mediator of RNA polymerase II transcription, subunit...
TCHHL1                0.007   trichohyalin-like 1 
FAM104A               0.007   hypothetical protein LOC84923 isoform 1 
FAM104A               0.007   hypothetical protein LOC84923 isoform 2 
LOC643677             0.007   hypothetical protein LOC643677 
NDN                   0.007   necdin 
LOC728351             0.007   PREDICTED: hypothetical protein 
LOC728351             0.007   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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