Guide to the Human Genome
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Name: KIAA1549 Sequence: fasta or formatted (1884aa) NCBI GI: 153792230
Description:

hypothetical protein LOC57670

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0        132           2
 C cysteine            0.5         10           1
 D aspartate           4.4         83           2
 E glutamate           5.8        109           2
 F phenylalanine       3.8         72           2
 G glycine             4.8         91           2
 H histidine           2.2         42           2
 I isoleucine          4.5         85           2
 K lysine              2.7         50           2
 L leucine             8.9        167           2
 M methionine          1.4         26           1
 N asparagine          2.6         49           2
 P proline             9.9        187           2
 Q glutamine           4.7         88           2
 R arginine            5.0         95           3
 S serine             13.4        252           3
 T threonine           8.0        151           3
 V valine              7.8        147           2
 W tryptophan          0.6         11           1
 Y tyrosine            2.0         37           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC57670 
C11orf41              0.095   hypothetical protein LOC25758 
MUC17                 0.020   mucin 17 
MUC4                  0.020   mucin 4 isoform a 
LOC100131514          0.018   PREDICTED: similar to hCG1747327, partial 
MUC3A                 0.017   PREDICTED: mucin 3A, intestinal 
MUC6                  0.016   mucin 6, gastric 
MUC16                 0.016   mucin 16 
MUC12                 0.015   PREDICTED: mucin 12 
MUC3A                 0.014   PREDICTED: mucin 3A, cell surface associated, parti...
LOC100133790          0.013   PREDICTED: intestinal mucin-like, partial 
MUC2                  0.012   mucin 2 precursor 
LOC732156             0.012   PREDICTED: similar to Mucin-3A 
LOC100294249          0.012   PREDICTED: hypothetical protein XP_002344067 
LOC729792             0.012   PREDICTED: hypothetical protein 
LOC729792             0.012   PREDICTED: hypothetical protein 
LOC729792             0.012   PREDICTED: hypothetical protein 
LOC100294238          0.012   PREDICTED: hypothetical protein 
LOC100294204          0.012   PREDICTED: hypothetical protein 
LOC100294136          0.012   PREDICTED: hypothetical protein 
LOC100294091          0.012   PREDICTED: hypothetical protein 
LOC730401             0.012   PREDICTED: hypothetical protein 
MUC3B                 0.012   PREDICTED: mucin 3B, cell surface associated, parti...
LOC100294501          0.012   PREDICTED: hypothetical protein 
MUC12                 0.011   PREDICTED: mucin 12, cell surface associated 
MUC5AC                0.011   mucin 5AC 
LOC100294236          0.011   PREDICTED: similar to diffuse panbronchiolitis crit...
MUC5B                 0.011   mucin 5, subtype B, tracheobronchial 
LOC100134138          0.010   PREDICTED: similar to mucin, partial 
MUC12                 0.010   PREDICTED: mucin 12 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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