Guide to the Human Genome
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Name: PLXNB3 Sequence: fasta or formatted (1932aa) NCBI GI: 253795481
Description:

plexin B3 isoform 2

Referenced in:

Semaphorins

Other entries for this name:
alt prot [1909aa] plexin B3 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.4        182           3
 C cysteine            3.3         64           1
 D aspartate           4.3         83           2
 E glutamate           5.3        102           2
 F phenylalanine       2.7         53           2
 G glycine             8.2        159           3
 H histidine           2.9         56           2
 I isoleucine          2.7         52           2
 K lysine              2.1         40           1
 L leucine            12.4        240           6
 M methionine          1.1         22           1
 N asparagine          2.3         44           2
 P proline             8.2        159           3
 Q glutamine           6.2        120           2
 R arginine            6.0        116           3
 S serine              6.4        124           3
 T threonine           4.8         93           2
 V valine              7.7        149           2
 W tryptophan          0.9         18           1
 Y tyrosine            2.9         56           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   plexin B3 isoform 2 
PLXNB3                0.980   plexin B3 isoform 1 
PLXNB1                0.317   plexin B1 
PLXNB1                0.317   plexin B1 
PLXNB2                0.303   plexin B2 
PLXND1                0.241   plexin D1 
PLXNA2                0.240   plexin A2 
PLXNA1                0.238   plexin A1 
PLXNA4                0.230   plexin A4 isoform 1 
PLXNA3                0.227   plexin A3 
PLXNC1                0.092   plexin C1 
PLXNA4                0.024   plexin A4 isoform 2 
PLXNA4                0.022   plexin A4 isoform 3 
MET                   0.019   met proto-oncogene isoform b precursor 
MST1R                 0.018   macrophage stimulating 1 receptor precursor 
MET                   0.017   met proto-oncogene isoform a precursor 
SEMA5B                0.009   semaphorin 5B isoform 1 
SEMA4C                0.009   semaphorin 4C 
SEMA4A                0.008   semaphorin B 
SEMA5A                0.008   semaphorin 5A 
SEMA4B                0.007   semaphorin 4B precursor 
SEMA4B                0.007   semaphorin 4B precursor 
SEMA6B                0.007   semaphorin 6B precursor 
SEMA4G                0.007   semaphorin 4G 
PKHD1L1               0.007   fibrocystin L 
SEMA6A                0.006   sema domain, transmembrane domain (TM), and cytoplas...
SEMA7A                0.006   semaphorin 7A isoform 1 preproprotein 
SEMA7A                0.006   semaphorin 7A isoform 3 
SEMA7A                0.006   semaphorin 7A isoform 2 preproprotein 
SEMA4F                0.005   semaphorin W 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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