Guide to the Human Genome
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Search of human proteins with 239755087

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239755087 PREDICTED: similar to zinc finger protein 598
[Homo sapiens]
         (159 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239755087 PREDICTED: similar to zinc finger protein 598 [Homo...   327   3e-90
gi|239749606 PREDICTED: similar to zinc finger protein 598 [Homo...   327   3e-90
gi|239743874 PREDICTED: similar to zinc finger protein 598 [Homo...   274   3e-74
gi|30039694 zinc finger protein 598 [Homo sapiens]                    267   2e-72
gi|118918407 spectrin repeat containing, nuclear envelope 2 isof...    34   0.060
gi|118918403 spectrin repeat containing, nuclear envelope 2 isof...    34   0.060
gi|183396804 Regulation of nuclear pre-mRNA domain containing 2 ...    32   0.18 
gi|33356148 formin-like 1 [Homo sapiens]                               32   0.18 
gi|42544130 splicing factor 1 isoform 1 [Homo sapiens]                 31   0.51 
gi|60460889 Myb protein P42POP [Homo sapiens]                          31   0.51 
gi|210032580 SET domain containing 1B [Homo sapiens]                   31   0.51 
gi|56118221 amyloid beta (A4) precursor protein-binding, family ...    30   0.67 
gi|38045948 ubiquitin-like modifier activating enzyme 7 [Homo sa...    30   0.67 
gi|58331242 formin homology 2 domain containing 3 [Homo sapiens]       30   0.87 
gi|19718731 bromodomain-containing protein 4 isoform long [Homo ...    30   0.87 
gi|155029550 chromosome 9 open reading frame 79 [Homo sapiens]         30   0.87 
gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens]             30   1.1  
gi|13273315 homeobox B4 [Homo sapiens]                                 30   1.1  
gi|55749531 splicing factor 3B subunit 2 [Homo sapiens]                30   1.1  
gi|56549694 enabled homolog isoform a [Homo sapiens]                   29   1.5  
gi|39930375 enabled homolog isoform b [Homo sapiens]                   29   1.5  
gi|31543452 PX domain containing serine/threonine kinase [Homo s...    29   1.5  
gi|109689723 abl interactor 2 [Homo sapiens]                           29   1.5  
gi|61743948 abl-interactor 1 isoform d [Homo sapiens]                  29   1.5  
gi|61743946 abl-interactor 1 isoform c [Homo sapiens]                  29   1.5  
gi|61743944 abl-interactor 1 isoform b [Homo sapiens]                  29   1.5  
gi|61743942 abl-interactor 1 isoform a [Homo sapiens]                  29   1.5  
gi|224451135 splicing factor, arginine/serine-rich 15 isoform 3 ...    29   1.5  
gi|224451133 splicing factor, arginine/serine-rich 15 isoform 2 ...    29   1.5  
gi|40789229 splicing factor, arginine/serine-rich 15 isoform 1 [...    29   1.5  

>gi|239755087 PREDICTED: similar to zinc finger protein 598 [Homo
           sapiens]
          Length = 159

 Score =  327 bits (837), Expect = 3e-90
 Identities = 159/159 (100%), Positives = 159/159 (100%)

Query: 1   MPPPPGFSAVVLLKGTPPPPPPGLSDEARFSEFKSHSGEFRQGLISAAQYYKSCRGLLGE 60
           MPPPPGFSAVVLLKGTPPPPPPGLSDEARFSEFKSHSGEFRQGLISAAQYYKSCRGLLGE
Sbjct: 1   MPPPPGFSAVVLLKGTPPPPPPGLSDEARFSEFKSHSGEFRQGLISAAQYYKSCRGLLGE 60

Query: 61  NFQKVFNELLVLLPDTAKQQEILSAHTDFGNREKTLSTKSKNNKKSAWQATTQQAGLDCR 120
           NFQKVFNELLVLLPDTAKQQEILSAHTDFGNREKTLSTKSKNNKKSAWQATTQQAGLDCR
Sbjct: 61  NFQKVFNELLVLLPDTAKQQEILSAHTDFGNREKTLSTKSKNNKKSAWQATTQQAGLDCR 120

Query: 121 VCPTCQQVLTHGDASSHQALHAARDDDFPSLQAISRIIT 159
           VCPTCQQVLTHGDASSHQALHAARDDDFPSLQAISRIIT
Sbjct: 121 VCPTCQQVLTHGDASSHQALHAARDDDFPSLQAISRIIT 159


>gi|239749606 PREDICTED: similar to zinc finger protein 598 [Homo
           sapiens]
          Length = 159

 Score =  327 bits (837), Expect = 3e-90
 Identities = 159/159 (100%), Positives = 159/159 (100%)

Query: 1   MPPPPGFSAVVLLKGTPPPPPPGLSDEARFSEFKSHSGEFRQGLISAAQYYKSCRGLLGE 60
           MPPPPGFSAVVLLKGTPPPPPPGLSDEARFSEFKSHSGEFRQGLISAAQYYKSCRGLLGE
Sbjct: 1   MPPPPGFSAVVLLKGTPPPPPPGLSDEARFSEFKSHSGEFRQGLISAAQYYKSCRGLLGE 60

Query: 61  NFQKVFNELLVLLPDTAKQQEILSAHTDFGNREKTLSTKSKNNKKSAWQATTQQAGLDCR 120
           NFQKVFNELLVLLPDTAKQQEILSAHTDFGNREKTLSTKSKNNKKSAWQATTQQAGLDCR
Sbjct: 61  NFQKVFNELLVLLPDTAKQQEILSAHTDFGNREKTLSTKSKNNKKSAWQATTQQAGLDCR 120

Query: 121 VCPTCQQVLTHGDASSHQALHAARDDDFPSLQAISRIIT 159
           VCPTCQQVLTHGDASSHQALHAARDDDFPSLQAISRIIT
Sbjct: 121 VCPTCQQVLTHGDASSHQALHAARDDDFPSLQAISRIIT 159


>gi|239743874 PREDICTED: similar to zinc finger protein 598 [Homo
           sapiens]
          Length = 186

 Score =  274 bits (700), Expect = 3e-74
 Identities = 135/135 (100%), Positives = 135/135 (100%)

Query: 25  SDEARFSEFKSHSGEFRQGLISAAQYYKSCRGLLGENFQKVFNELLVLLPDTAKQQEILS 84
           SDEARFSEFKSHSGEFRQGLISAAQYYKSCRGLLGENFQKVFNELLVLLPDTAKQQEILS
Sbjct: 52  SDEARFSEFKSHSGEFRQGLISAAQYYKSCRGLLGENFQKVFNELLVLLPDTAKQQEILS 111

Query: 85  AHTDFGNREKTLSTKSKNNKKSAWQATTQQAGLDCRVCPTCQQVLTHGDASSHQALHAAR 144
           AHTDFGNREKTLSTKSKNNKKSAWQATTQQAGLDCRVCPTCQQVLTHGDASSHQALHAAR
Sbjct: 112 AHTDFGNREKTLSTKSKNNKKSAWQATTQQAGLDCRVCPTCQQVLTHGDASSHQALHAAR 171

Query: 145 DDDFPSLQAISRIIT 159
           DDDFPSLQAISRIIT
Sbjct: 172 DDDFPSLQAISRIIT 186


>gi|30039694 zinc finger protein 598 [Homo sapiens]
          Length = 904

 Score =  267 bits (683), Expect = 2e-72
 Identities = 149/225 (66%), Positives = 151/225 (67%), Gaps = 66/225 (29%)

Query: 1   MPPPPGFSAVVLLKGT--------------PPPPPPGL---------------------- 24
           MPPPPGFSAVVLLKGT              PPP   GL                      
Sbjct: 680 MPPPPGFSAVVLLKGTPPPPPPGLVPPISKPPPGFSGLLPSPHPACVPSPATTTTTKAPR 739

Query: 25  ------------------------------SDEARFSEFKSHSGEFRQGLISAAQYYKSC 54
                                         SDEARFSEFKSHSGEFRQGLISAAQYYKSC
Sbjct: 740 LLPAPRAYLVPENFRERNLQLIQSIRDFLQSDEARFSEFKSHSGEFRQGLISAAQYYKSC 799

Query: 55  RGLLGENFQKVFNELLVLLPDTAKQQEILSAHTDFGNREKTLSTKSKNNKKSAWQATTQQ 114
           R LLGENFQKVFNELLVLLPDTAKQQE+LSAHTDF NREK LSTKSK NKKSAWQATTQQ
Sbjct: 800 RDLLGENFQKVFNELLVLLPDTAKQQELLSAHTDFCNREKPLSTKSKKNKKSAWQATTQQ 859

Query: 115 AGLDCRVCPTCQQVLTHGDASSHQALHAARDDDFPSLQAISRIIT 159
           AGLDCRVCPTCQQVL HGDASSHQALHAARDDDFPSLQAI+RIIT
Sbjct: 860 AGLDCRVCPTCQQVLAHGDASSHQALHAARDDDFPSLQAIARIIT 904


>gi|118918407 spectrin repeat containing, nuclear envelope 2 isoform 5
            [Homo sapiens]
          Length = 6907

 Score = 33.9 bits (76), Expect = 0.060
 Identities = 19/55 (34%), Positives = 30/55 (54%)

Query: 52   KSCRGLLGENFQKVFNELLVLLPDTAKQQEILSAHTDFGNREKTLSTKSKNNKKS 106
            + CR  L +  +K+ NE+L   P  A +++I   +    N EK L  KSKN +K+
Sbjct: 3662 EECRKALEDIDEKISNEVLKSSPSYAMRRKIEEINNGLHNVEKMLQQKSKNIEKA 3716


>gi|118918403 spectrin repeat containing, nuclear envelope 2 isoform 1
            [Homo sapiens]
          Length = 6885

 Score = 33.9 bits (76), Expect = 0.060
 Identities = 19/55 (34%), Positives = 30/55 (54%)

Query: 52   KSCRGLLGENFQKVFNELLVLLPDTAKQQEILSAHTDFGNREKTLSTKSKNNKKS 106
            + CR  L +  +K+ NE+L   P  A +++I   +    N EK L  KSKN +K+
Sbjct: 3662 EECRKALEDIDEKISNEVLKSSPSYAMRRKIEEINNGLHNVEKMLQQKSKNIEKA 3716


>gi|183396804 Regulation of nuclear pre-mRNA domain containing 2 [Homo
            sapiens]
          Length = 1461

 Score = 32.3 bits (72), Expect = 0.18
 Identities = 12/22 (54%), Positives = 14/22 (63%)

Query: 2    PPPPGFSAVVLLKGTPPPPPPG 23
            PPPPG  + +     PPPPPPG
Sbjct: 1256 PPPPGEHSGIPFPTPPPPPPPG 1277



 Score = 26.6 bits (57), Expect = 9.6
 Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 4/25 (16%)

Query: 2    PPPPGFSAVVLLKG----TPPPPPP 22
            PPPPG  +     G    TPPPPPP
Sbjct: 1273 PPPPGEHSSSGGSGVPFSTPPPPPP 1297


>gi|33356148 formin-like 1 [Homo sapiens]
          Length = 1100

 Score = 32.3 bits (72), Expect = 0.18
 Identities = 13/22 (59%), Positives = 13/22 (59%)

Query: 2   PPPPGFSAVVLLKGTPPPPPPG 23
           PPPPG    V     PPPPPPG
Sbjct: 592 PPPPGTDGPVPPPPPPPPPPPG 613


>gi|42544130 splicing factor 1 isoform 1 [Homo sapiens]
          Length = 639

 Score = 30.8 bits (68), Expect = 0.51
 Identities = 12/21 (57%), Positives = 14/21 (66%)

Query: 2   PPPPGFSAVVLLKGTPPPPPP 22
           PPPP  SA ++    PPPPPP
Sbjct: 586 PPPPPGSAGMMYAPPPPPPPP 606



 Score = 30.8 bits (68), Expect = 0.51
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 3/29 (10%)

Query: 2   PPPPGFSAVVLLKGTPPPPPPGLSDEARF 30
           PPPPG + ++     PPPPPP   D + F
Sbjct: 587 PPPPGSAGMMY---APPPPPPPPMDPSNF 612



 Score = 26.6 bits (57), Expect = 9.6
 Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 1/22 (4%)

Query: 1   MPPPPGFSAVVLLKGTPPPPPP 22
           +P PPG     L  G PPPPPP
Sbjct: 567 VPLPPGVQPP-LPPGAPPPPPP 587


>gi|60460889 Myb protein P42POP [Homo sapiens]
          Length = 399

 Score = 30.8 bits (68), Expect = 0.51
 Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 10/77 (12%)

Query: 1   MPPPPGFSAVVLLKGTPPP---PPPGLSDEARFSEFKSHSGEFRQGLISAAQYYKSCRGL 57
           +PPPP  + V     +PPP   PPP LS           S +F +     A   +   G 
Sbjct: 227 LPPPPPLAQVAPSPPSPPPPPRPPPTLS-------ASDPSLDFLRAQQETANAIRELAGT 279

Query: 58  LGENFQKVFNELLVLLP 74
           L +   K+   L  LLP
Sbjct: 280 LRQGLAKLSEALSALLP 296


>gi|210032580 SET domain containing 1B [Homo sapiens]
          Length = 1923

 Score = 30.8 bits (68), Expect = 0.51
 Identities = 13/22 (59%), Positives = 14/22 (63%), Gaps = 3/22 (13%)

Query: 1   MPPPPGFSAVVLLKGTPPPPPP 22
           +PPPPGF     L   PPPPPP
Sbjct: 681 LPPPPGFPP---LPPPPPPPPP 699



 Score = 29.6 bits (65), Expect = 1.1
 Identities = 12/21 (57%), Positives = 12/21 (57%)

Query: 2   PPPPGFSAVVLLKGTPPPPPP 22
           PP PGF     L   PPPPPP
Sbjct: 698 PPQPGFPMPPPLPPPPPPPPP 718


>gi|56118221 amyloid beta (A4) precursor protein-binding, family B,
           member 1 interacting protein [Homo sapiens]
          Length = 666

 Score = 30.4 bits (67), Expect = 0.67
 Identities = 10/21 (47%), Positives = 14/21 (66%)

Query: 2   PPPPGFSAVVLLKGTPPPPPP 22
           PPPP ++ +   +  PPPPPP
Sbjct: 585 PPPPSYAGIAGSELPPPPPPP 605



 Score = 28.1 bits (61), Expect = 3.3
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 1   MPPPPGFSAVVLLKGTPPPPPPGLSDEARFSEFKS 35
           +PPPP  +  VL    PPPPP  LS E   ++ K+
Sbjct: 128 LPPPP--ADPVLDLPLPPPPPEPLSQEEEEAQAKA 160



 Score = 28.1 bits (61), Expect = 3.3
 Identities = 11/22 (50%), Positives = 13/22 (59%)

Query: 1   MPPPPGFSAVVLLKGTPPPPPP 22
           +PPPP   A +     PPPPPP
Sbjct: 583 VPPPPPSYAGIAGSELPPPPPP 604


>gi|38045948 ubiquitin-like modifier activating enzyme 7 [Homo
           sapiens]
          Length = 1012

 Score = 30.4 bits (67), Expect = 0.67
 Identities = 24/86 (27%), Positives = 33/86 (38%), Gaps = 13/86 (15%)

Query: 32  EFKSHSGEFRQGLISAAQYYKSCRGLLGENFQKVFNELLVLLPDTAKQQ---------EI 82
           EF ++       +++AA  Y    GL G        ELL LLP    QQ         E+
Sbjct: 716 EFDTNQDTHLLYVLAAANLYAQMHGLPGSQDWTALRELLKLLPQPDPQQMAPIFASNLEL 775

Query: 83  LSAHTDFGNREKTLSTKSKNNKKSAW 108
            SA  +FG  ++    K  N     W
Sbjct: 776 ASASAEFGPEQQ----KELNKALEVW 797


>gi|58331242 formin homology 2 domain containing 3 [Homo sapiens]
          Length = 1439

 Score = 30.0 bits (66), Expect = 0.87
 Identities = 14/25 (56%), Positives = 14/25 (56%), Gaps = 6/25 (24%)

Query: 2   PPPPGFSAVVLLKGTPPPPPPGLSD 26
           PPPP F       G PPPPPP L D
Sbjct: 849 PPPPTFL------GLPPPPPPPLLD 867


>gi|19718731 bromodomain-containing protein 4 isoform long [Homo
           sapiens]
          Length = 1362

 Score = 30.0 bits (66), Expect = 0.87
 Identities = 12/22 (54%), Positives = 14/22 (63%)

Query: 1   MPPPPGFSAVVLLKGTPPPPPP 22
           +PPPP  S    L+  PPPPPP
Sbjct: 958 LPPPPHPSVQQQLQQQPPPPPP 979


>gi|155029550 chromosome 9 open reading frame 79 [Homo sapiens]
          Length = 1445

 Score = 30.0 bits (66), Expect = 0.87
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 4/54 (7%)

Query: 7   FSAVVLLKGTPPPPPPGLSDEARFSEFKSHSGEFRQGLISAAQYYKSCRGLLGE 60
           F  ++ +   PP PPPG    +R  + +  SG  R   ISA    K+CR LL E
Sbjct: 80  FLLLLYVHSDPPSPPPGRKRSSREPQ-RERSGRSRSRKISA---LKACRILLRE 129


>gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens]
          Length = 502

 Score = 29.6 bits (65), Expect = 1.1
 Identities = 11/21 (52%), Positives = 12/21 (57%)

Query: 2   PPPPGFSAVVLLKGTPPPPPP 22
           PPPPG     +    PPPPPP
Sbjct: 383 PPPPGAGGPPMPPPPPPPPPP 403



 Score = 29.3 bits (64), Expect = 1.5
 Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 7/21 (33%)

Query: 2   PPPPGFSAVVLLKGTPPPPPP 22
           PPPPG       +G PPPPPP
Sbjct: 359 PPPPG-------RGGPPPPPP 372



 Score = 26.9 bits (58), Expect = 7.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 1   MPPPPGFSAVVLLKGTPPPPPP 22
           +PPPP  +    +   PPPPPP
Sbjct: 381 LPPPPPGAGGPPMPPPPPPPPP 402


>gi|13273315 homeobox B4 [Homo sapiens]
          Length = 251

 Score = 29.6 bits (65), Expect = 1.1
 Identities = 14/27 (51%), Positives = 14/27 (51%), Gaps = 11/27 (40%)

Query: 2  PPPPGFSAVVLLKGTPPPPPPGLSDEA 28
          PPPP           PPPPPPGLS  A
Sbjct: 78 PPPP-----------PPPPPPGLSPRA 93


>gi|55749531 splicing factor 3B subunit 2 [Homo sapiens]
          Length = 895

 Score = 29.6 bits (65), Expect = 1.1
 Identities = 13/24 (54%), Positives = 14/24 (58%)

Query: 1   MPPPPGFSAVVLLKGTPPPPPPGL 24
           MPPPP     +     PPPPPPGL
Sbjct: 92  MPPPPLGLPPLQPPPPPPPPPPGL 115


>gi|56549694 enabled homolog isoform a [Homo sapiens]
          Length = 591

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 12/22 (54%), Positives = 13/22 (59%)

Query: 1   MPPPPGFSAVVLLKGTPPPPPP 22
           +PPPPG      L  T PPPPP
Sbjct: 330 LPPPPGPPPPPPLPSTGPPPPP 351


>gi|39930375 enabled homolog isoform b [Homo sapiens]
          Length = 570

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 12/22 (54%), Positives = 13/22 (59%)

Query: 1   MPPPPGFSAVVLLKGTPPPPPP 22
           +PPPPG      L  T PPPPP
Sbjct: 330 LPPPPGPPPPPPLPSTGPPPPP 351


>gi|31543452 PX domain containing serine/threonine kinase [Homo
           sapiens]
          Length = 578

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 11/21 (52%), Positives = 12/21 (57%)

Query: 2   PPPPGFSAVVLLKGTPPPPPP 22
           P PP  S +  L   PPPPPP
Sbjct: 503 PTPPSTSGISALPPPPPPPPP 523


>gi|109689723 abl interactor 2 [Homo sapiens]
          Length = 475

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 11/21 (52%), Positives = 12/21 (57%)

Query: 2   PPPPGFSAVVLLKGTPPPPPP 22
           PPPP     V  +  PPPPPP
Sbjct: 365 PPPPPVEEPVFDESPPPPPPP 385


>gi|61743948 abl-interactor 1 isoform d [Homo sapiens]
          Length = 476

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 2   PPPPGFSAVVLLKGTPPPPPP 22
           PPPP    + +   +PPPPPP
Sbjct: 364 PPPPPPDDIPMFDDSPPPPPP 384



 Score = 27.3 bits (59), Expect = 5.6
 Identities = 12/42 (28%), Positives = 18/42 (42%)

Query: 2   PPPPGFSAVVLLKGTPPPPPPGLSDEARFSEFKSHSGEFRQG 43
           PPPP     +     PPPPPP +  E   +    ++  +  G
Sbjct: 365 PPPPPDDIPMFDDSPPPPPPPPVDYEDEEAAVVQYNDPYADG 406


>gi|61743946 abl-interactor 1 isoform c [Homo sapiens]
          Length = 452

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 2   PPPPGFSAVVLLKGTPPPPPP 22
           PPPP    + +   +PPPPPP
Sbjct: 340 PPPPPPDDIPMFDDSPPPPPP 360



 Score = 27.3 bits (59), Expect = 5.6
 Identities = 12/42 (28%), Positives = 18/42 (42%)

Query: 2   PPPPGFSAVVLLKGTPPPPPPGLSDEARFSEFKSHSGEFRQG 43
           PPPP     +     PPPPPP +  E   +    ++  +  G
Sbjct: 341 PPPPPDDIPMFDDSPPPPPPPPVDYEDEEAAVVQYNDPYADG 382


>gi|61743944 abl-interactor 1 isoform b [Homo sapiens]
          Length = 481

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 2   PPPPGFSAVVLLKGTPPPPPP 22
           PPPP    + +   +PPPPPP
Sbjct: 369 PPPPPPDDIPMFDDSPPPPPP 389



 Score = 27.3 bits (59), Expect = 5.6
 Identities = 12/42 (28%), Positives = 18/42 (42%)

Query: 2   PPPPGFSAVVLLKGTPPPPPPGLSDEARFSEFKSHSGEFRQG 43
           PPPP     +     PPPPPP +  E   +    ++  +  G
Sbjct: 370 PPPPPDDIPMFDDSPPPPPPPPVDYEDEEAAVVQYNDPYADG 411


>gi|61743942 abl-interactor 1 isoform a [Homo sapiens]
          Length = 508

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 2   PPPPGFSAVVLLKGTPPPPPP 22
           PPPP    + +   +PPPPPP
Sbjct: 396 PPPPPPDDIPMFDDSPPPPPP 416



 Score = 27.3 bits (59), Expect = 5.6
 Identities = 12/42 (28%), Positives = 18/42 (42%)

Query: 2   PPPPGFSAVVLLKGTPPPPPPGLSDEARFSEFKSHSGEFRQG 43
           PPPP     +     PPPPPP +  E   +    ++  +  G
Sbjct: 397 PPPPPDDIPMFDDSPPPPPPPPVDYEDEEAAVVQYNDPYADG 438


>gi|224451135 splicing factor, arginine/serine-rich 15 isoform 3
           [Homo sapiens]
          Length = 1125

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 12/20 (60%), Positives = 12/20 (60%), Gaps = 5/20 (25%)

Query: 3   PPPGFSAVVLLKGTPPPPPP 22
           PPPGF       G PPPPPP
Sbjct: 707 PPPGFG-----PGVPPPPPP 721


>gi|224451133 splicing factor, arginine/serine-rich 15 isoform 2
           [Homo sapiens]
          Length = 1132

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 12/20 (60%), Positives = 12/20 (60%), Gaps = 5/20 (25%)

Query: 3   PPPGFSAVVLLKGTPPPPPP 22
           PPPGF       G PPPPPP
Sbjct: 692 PPPGFG-----PGVPPPPPP 706


>gi|40789229 splicing factor, arginine/serine-rich 15 isoform 1
           [Homo sapiens]
          Length = 1147

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 12/20 (60%), Positives = 12/20 (60%), Gaps = 5/20 (25%)

Query: 3   PPPGFSAVVLLKGTPPPPPP 22
           PPPGF       G PPPPPP
Sbjct: 707 PPPGFG-----PGVPPPPPP 721


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.131    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,257,039
Number of Sequences: 37866
Number of extensions: 425207
Number of successful extensions: 4661
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 79
Number of HSP's that attempted gapping in prelim test: 3864
Number of HSP's gapped (non-prelim): 691
length of query: 159
length of database: 18,247,518
effective HSP length: 94
effective length of query: 65
effective length of database: 14,688,114
effective search space: 954727410
effective search space used: 954727410
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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