Guide to the Human Genome
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Name: LOC645937 Sequence: fasta or formatted (159aa) NCBI GI: 239749606
Description:

PREDICTED: similar to zinc finger protein 598

Not currently referenced in the text

Other entries for this name:
alt prot {186aa} PREDICTED: similar to zinc finger protein 598
alt mRNA {159aa} PREDICTED: similar to zinc finger protein 598
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         14           2
 C cysteine            2.5          4           1
 D aspartate           5.0          8           3
 E glutamate           4.4          7           1
 F phenylalanine       5.0          8           1
 G glycine             6.3         10           1
 H histidine           3.1          5           1
 I isoleucine          3.1          5           2
 K lysine              6.3         10           2
 L leucine            10.1         16           2
 M methionine          0.6          1           1
 N asparagine          3.1          5           2
 P proline             8.2         13           6
 Q glutamine           7.5         12           2
 R arginine            4.4          7           1
 S serine              9.4         15           2
 T threonine           6.3         10           2
 V valine              3.8          6           2
 W tryptophan          0.6          1           1
 Y tyrosine            1.3          2           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to zinc finger protein 598 [Homo... 
LOC645937             1.000   PREDICTED: similar to zinc finger protein 598 [Homo...
LOC645937             0.825   PREDICTED: similar to zinc finger protein 598 [Homo...
ZNF598                0.801   zinc finger protein 598 
SYNE2                 0.030   spectrin repeat containing, nuclear envelope 2 isof...
SYNE2                 0.030   spectrin repeat containing, nuclear envelope 2 isof...
RPRD2                 0.023   Regulation of nuclear pre-mRNA domain containing 2 ...
FMNL1                 0.023   formin-like 1 
SF1                   0.020   splicing factor 1 isoform 1 
MYPOP                 0.020   Myb protein P42POP 
SETD1B                0.020   SET domain containing 1B 
APBB1IP               0.017   amyloid beta (A4) precursor protein-binding, family ...
UBA7                  0.017   ubiquitin-like modifier activating enzyme 7 
FHOD3                 0.017   formin homology 2 domain containing 3 
BRD4                  0.017   bromodomain-containing protein 4 isoform long 
C9orf79               0.017   chromosome 9 open reading frame 79 
WAS                   0.017   Wiskott-Aldrich syndrome protein 
HOXB4                 0.017   homeobox B4 
SF3B2                 0.017   splicing factor 3B subunit 2 
ENAH                  0.013   enabled homolog isoform a 
ENAH                  0.013   enabled homolog isoform b 
PXK                   0.013   PX domain containing serine/threonine kinase 
ABI2                  0.013   abl interactor 2 
ABI1                  0.013   abl-interactor 1 isoform d 
ABI1                  0.013   abl-interactor 1 isoform c 
ABI1                  0.013   abl-interactor 1 isoform b 
ABI1                  0.013   abl-interactor 1 isoform a 
SFRS15                0.013   splicing factor, arginine/serine-rich 15 isoform 3 ...
SFRS15                0.013   splicing factor, arginine/serine-rich 15 isoform 2 ...
SFRS15                0.013   splicing factor, arginine/serine-rich 15 isoform 1 [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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