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Search of human proteins with 239755029
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755029 PREDICTED: hypothetical protein [Homo sapiens]
(183 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755029 PREDICTED: hypothetical protein [Homo sapiens] 375 e-104
gi|239749538 PREDICTED: hypothetical protein XP_002347080 [Homo ... 312 9e-86
gi|239743688 PREDICTED: hypothetical protein XP_002342946 [Homo ... 312 9e-86
gi|188536004 zinc finger protein 469 [Homo sapiens] 39 0.002
gi|187608777 NF-kappa-B inhibitor-like protein 2 [Homo sapiens] 37 0.009
gi|47271406 bin3, bicoid-interacting 3 [Homo sapiens] 34 0.061
gi|54607124 RNA binding motif protein 15B [Homo sapiens] 34 0.080
gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens] 34 0.080
gi|45267837 rabphilin 3A homolog isoform 2 [Homo sapiens] 34 0.080
gi|239742114 PREDICTED: similar to hCG2023245 [Homo sapiens] 33 0.10
gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens] 33 0.10
gi|169206224 PREDICTED: hypothetical protein [Homo sapiens] 33 0.14
gi|169206527 PREDICTED: hypothetical protein [Homo sapiens] 33 0.14
gi|113424187 PREDICTED: hypothetical protein [Homo sapiens] 33 0.14
gi|55750053 atrophin-1 [Homo sapiens] 33 0.14
gi|55750041 atrophin-1 [Homo sapiens] 33 0.14
gi|22027595 alpha 1 type XIII collagen isoform 12 [Homo sapiens] 33 0.14
gi|22027583 alpha 1 type XIII collagen isoform 7 [Homo sapiens] 33 0.14
gi|14249150 single stranded DNA binding protein 4 isoform a [Hom... 33 0.14
gi|239757337 PREDICTED: hypothetical protein XP_002345251 [Homo ... 33 0.18
gi|239751874 PREDICTED: hypothetical protein XP_002348034 [Homo ... 33 0.18
gi|169206489 PREDICTED: hypothetical protein [Homo sapiens] 33 0.18
gi|239746363 PREDICTED: hypothetical protein XP_002343737 [Homo ... 33 0.18
gi|169205942 PREDICTED: hypothetical protein [Homo sapiens] 33 0.18
gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo s... 33 0.18
gi|150170670 piccolo isoform 2 [Homo sapiens] 33 0.18
gi|150378539 piccolo isoform 1 [Homo sapiens] 33 0.18
gi|239755571 PREDICTED: hypothetical protein [Homo sapiens] 32 0.23
gi|169171345 PREDICTED: hypothetical protein [Homo sapiens] 32 0.23
gi|169172205 PREDICTED: hypothetical protein [Homo sapiens] 32 0.23
>gi|239755029 PREDICTED: hypothetical protein [Homo sapiens]
Length = 183
Score = 375 bits (962), Expect = e-104
Identities = 183/183 (100%), Positives = 183/183 (100%)
Query: 1 MVHWSQGVSGRASARVSLEPSTHAWEFQIPSLGRNLHVSPGTVLSDLQPLGITFPVFENS 60
MVHWSQGVSGRASARVSLEPSTHAWEFQIPSLGRNLHVSPGTVLSDLQPLGITFPVFENS
Sbjct: 1 MVHWSQGVSGRASARVSLEPSTHAWEFQIPSLGRNLHVSPGTVLSDLQPLGITFPVFENS 60
Query: 61 ERSSRHLPQAKAINPHHTASLSPAGRGAQRPPERFLPSSVSAGSAARTLRRGSEARKAQT 120
ERSSRHLPQAKAINPHHTASLSPAGRGAQRPPERFLPSSVSAGSAARTLRRGSEARKAQT
Sbjct: 61 ERSSRHLPQAKAINPHHTASLSPAGRGAQRPPERFLPSSVSAGSAARTLRRGSEARKAQT 120
Query: 121 PRPAGVAQGSGGGGERWLQGLGPPRGRGLSTAPIDKGHECELCGTMEAHIIKEFDLIGAI 180
PRPAGVAQGSGGGGERWLQGLGPPRGRGLSTAPIDKGHECELCGTMEAHIIKEFDLIGAI
Sbjct: 121 PRPAGVAQGSGGGGERWLQGLGPPRGRGLSTAPIDKGHECELCGTMEAHIIKEFDLIGAI 180
Query: 181 TED 183
TED
Sbjct: 181 TED 183
>gi|239749538 PREDICTED: hypothetical protein XP_002347080 [Homo
sapiens]
Length = 400
Score = 312 bits (800), Expect = 9e-86
Identities = 153/153 (100%), Positives = 153/153 (100%)
Query: 1 MVHWSQGVSGRASARVSLEPSTHAWEFQIPSLGRNLHVSPGTVLSDLQPLGITFPVFENS 60
MVHWSQGVSGRASARVSLEPSTHAWEFQIPSLGRNLHVSPGTVLSDLQPLGITFPVFENS
Sbjct: 1 MVHWSQGVSGRASARVSLEPSTHAWEFQIPSLGRNLHVSPGTVLSDLQPLGITFPVFENS 60
Query: 61 ERSSRHLPQAKAINPHHTASLSPAGRGAQRPPERFLPSSVSAGSAARTLRRGSEARKAQT 120
ERSSRHLPQAKAINPHHTASLSPAGRGAQRPPERFLPSSVSAGSAARTLRRGSEARKAQT
Sbjct: 61 ERSSRHLPQAKAINPHHTASLSPAGRGAQRPPERFLPSSVSAGSAARTLRRGSEARKAQT 120
Query: 121 PRPAGVAQGSGGGGERWLQGLGPPRGRGLSTAP 153
PRPAGVAQGSGGGGERWLQGLGPPRGRGLSTAP
Sbjct: 121 PRPAGVAQGSGGGGERWLQGLGPPRGRGLSTAP 153
>gi|239743688 PREDICTED: hypothetical protein XP_002342946 [Homo
sapiens]
Length = 400
Score = 312 bits (800), Expect = 9e-86
Identities = 153/153 (100%), Positives = 153/153 (100%)
Query: 1 MVHWSQGVSGRASARVSLEPSTHAWEFQIPSLGRNLHVSPGTVLSDLQPLGITFPVFENS 60
MVHWSQGVSGRASARVSLEPSTHAWEFQIPSLGRNLHVSPGTVLSDLQPLGITFPVFENS
Sbjct: 1 MVHWSQGVSGRASARVSLEPSTHAWEFQIPSLGRNLHVSPGTVLSDLQPLGITFPVFENS 60
Query: 61 ERSSRHLPQAKAINPHHTASLSPAGRGAQRPPERFLPSSVSAGSAARTLRRGSEARKAQT 120
ERSSRHLPQAKAINPHHTASLSPAGRGAQRPPERFLPSSVSAGSAARTLRRGSEARKAQT
Sbjct: 61 ERSSRHLPQAKAINPHHTASLSPAGRGAQRPPERFLPSSVSAGSAARTLRRGSEARKAQT 120
Query: 121 PRPAGVAQGSGGGGERWLQGLGPPRGRGLSTAP 153
PRPAGVAQGSGGGGERWLQGLGPPRGRGLSTAP
Sbjct: 121 PRPAGVAQGSGGGGERWLQGLGPPRGRGLSTAP 153
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 38.9 bits (89), Expect = 0.002
Identities = 39/124 (31%), Positives = 53/124 (42%), Gaps = 13/124 (10%)
Query: 43 VLSDLQPLGITFPVFENSERSSRHL-PQAKAINPHHTASLSP-----AGRGAQ---RPPE 93
V +D +P G P + +S + P++KA P A+ P RG RP
Sbjct: 867 VFADEEPSGPRGPSSGHPLKSKAGVTPESKAPPPLPAATPDPQTPRPGDRGCPARGRPKT 926
Query: 94 RFL---PSSVSAGSAARTLRRGSEARKAQTPRPAG-VAQGSGGGGERWLQGLGPPRGRGL 149
R L P+ A S R RRG + + + +G A+GSG GG GL P R GL
Sbjct: 927 RSLGLAPTEADAPSQGRQQRRGKQLKLFRKDLDSGGAAEGSGSGGGGRASGLRPRRNDGL 986
Query: 150 STAP 153
P
Sbjct: 987 GERP 990
>gi|187608777 NF-kappa-B inhibitor-like protein 2 [Homo sapiens]
Length = 1378
Score = 37.0 bits (84), Expect = 0.009
Identities = 30/92 (32%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Query: 62 RSSRHLPQAKAINPHHTASLSPAGRGAQRPPERFLPSSVSAGSAARTLRRGSEARKAQTP 121
R SRH P + + + S PA +RP V+A + R EA A T
Sbjct: 731 RRSRHGPASSSSSSEGEDSAGPARPSQKRPRCSATAQRVAAWTPGPASNR--EAATASTS 788
Query: 122 RPAGVAQGSGGGGERWLQGLGPPRGRGLSTAP 153
R A A G G + G GPPRG + AP
Sbjct: 789 RAAYQAAIRGVGSAQSRLGPGPPRGHSKALAP 820
>gi|47271406 bin3, bicoid-interacting 3 [Homo sapiens]
Length = 689
Score = 34.3 bits (77), Expect = 0.061
Identities = 30/90 (33%), Positives = 36/90 (40%), Gaps = 9/90 (10%)
Query: 73 INPHHTASLSPAGRGAQRPPERFLPSSVSAGSAARTLRRGSEARKAQTPRPAGVAQGSGG 132
+ PH A+ G +R P R P SAGS A + R S A + Q GG
Sbjct: 32 VPPHQEAASGELRGGTERGPGRCAP---SAGSPAAAVGRESPGAAATSSSGPQAQQHRGG 88
Query: 133 GGERWLQG---LGPPRGRGLSTAPIDKGHE 159
G + G L P GR AP D G E
Sbjct: 89 GPQAQSHGEARLSDPPGR---AAPPDVGEE 115
>gi|54607124 RNA binding motif protein 15B [Homo sapiens]
Length = 890
Score = 33.9 bits (76), Expect = 0.080
Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 82 SPAGRG----AQRPPERFLPSSVSAGSAARTLRRGSEARKAQTPRPAGVAQGSGGGGERW 137
SP+GRG A+RP ER + AA G++ R GSGGGG R
Sbjct: 10 SPSGRGSSSSAKRPREREREAEAGGRRAAHKASGGAKHPVPARARDKPRGSGSGGGGHRD 69
Query: 138 LQGLGPPRGRGLS 150
+G G R S
Sbjct: 70 GRGTGDANHRASS 82
>gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens]
Length = 694
Score = 33.9 bits (76), Expect = 0.080
Identities = 31/101 (30%), Positives = 43/101 (42%), Gaps = 8/101 (7%)
Query: 40 PGTVLSDLQPLGITFPVFENSERSSRHLPQAKAINPHHTASLSPAGRGAQR--PPERFLP 97
P VL P+ T P SE ++ P+ A P H A G R P ++ P
Sbjct: 162 PKQVLPQPMPIKKTKPQQPVSEPAA---PEQPAPEPKHPARAPARGDSEDRRGPGQKTGP 218
Query: 98 SSVSA---GSAARTLRRGSEARKAQTPRPAGVAQGSGGGGE 135
SA G+ +RR SEAR + + R + SGG G+
Sbjct: 219 DPASAPGRGNYGPPVRRASEARMSSSSRDSESWDHSGGAGD 259
>gi|45267837 rabphilin 3A homolog isoform 2 [Homo sapiens]
Length = 690
Score = 33.9 bits (76), Expect = 0.080
Identities = 31/101 (30%), Positives = 43/101 (42%), Gaps = 8/101 (7%)
Query: 40 PGTVLSDLQPLGITFPVFENSERSSRHLPQAKAINPHHTASLSPAGRGAQR--PPERFLP 97
P VL P+ T P SE ++ P+ A P H A G R P ++ P
Sbjct: 158 PKQVLPQPMPIKKTKPQQPVSEPAA---PEQPAPEPKHPARAPARGDSEDRRGPGQKTGP 214
Query: 98 SSVSA---GSAARTLRRGSEARKAQTPRPAGVAQGSGGGGE 135
SA G+ +RR SEAR + + R + SGG G+
Sbjct: 215 DPASAPGRGNYGPPVRRASEARMSSSSRDSESWDHSGGAGD 255
>gi|239742114 PREDICTED: similar to hCG2023245 [Homo sapiens]
Length = 329
Score = 33.5 bits (75), Expect = 0.10
Identities = 37/119 (31%), Positives = 45/119 (37%), Gaps = 26/119 (21%)
Query: 45 SDLQPLGITFPVFENSERSSRHLPQAKAINPHHTASLSPAGRGAQRPPER---------- 94
SD+Q L V+EN ++ P AK P S AG G QR PE
Sbjct: 67 SDMQTL-----VYENYDKP----PSAKCRRPGPGVSAVSAG-GQQRAPESQERPAEESAP 116
Query: 95 -FLPSSVSAGSAARTLRRGSEARKAQTPRP-----AGVAQGSGGGGERWLQGLGPPRGR 147
+PSS G RR S A + P P AG A + + G PRGR
Sbjct: 117 ALMPSSAPRGPTEPAFRRPSSADRPLAPGPSSSPGAGRAPRAMASPSGSSEATGKPRGR 175
>gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens]
Length = 1003
Score = 33.5 bits (75), Expect = 0.10
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 68 PQAKAINPHHTASLSPAGRGAQRPPERFLPSSVSAGSAARTLRRGSEARKAQTPRPAGVA 127
P+A+A + H++SL P+ R +RPP F + G +T RR A P+P +
Sbjct: 346 PRAQAPSASHSSSLRPSQRRPRRPPTVF---RLLEGRGPQTPRRSRPRAPAPVPQPFSLP 402
Query: 128 QGS 130
+ S
Sbjct: 403 EPS 405
>gi|169206224 PREDICTED: hypothetical protein [Homo sapiens]
Length = 318
Score = 33.1 bits (74), Expect = 0.14
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 10/59 (16%)
Query: 110 RRGSEARKAQTPRPAGVAQGSGGGGERWLQGLGPPRGRGLSTAPIDKGHECELCGTMEA 168
+R S+A KA P G G GG G+ P+G G P ++GH C G EA
Sbjct: 70 KRRSQALKASDPLSPGGPAGKGGAGD--------PQGAGAD--PGNQGHRCGRMGVTEA 118
>gi|169206527 PREDICTED: hypothetical protein [Homo sapiens]
Length = 318
Score = 33.1 bits (74), Expect = 0.14
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 10/59 (16%)
Query: 110 RRGSEARKAQTPRPAGVAQGSGGGGERWLQGLGPPRGRGLSTAPIDKGHECELCGTMEA 168
+R S+A KA P G G GG G+ P+G G P ++GH C G EA
Sbjct: 70 KRRSQALKASDPLSPGGPAGKGGAGD--------PQGAGAD--PGNQGHRCGRMGVTEA 118
>gi|113424187 PREDICTED: hypothetical protein [Homo sapiens]
Length = 268
Score = 33.1 bits (74), Expect = 0.14
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 10/59 (16%)
Query: 110 RRGSEARKAQTPRPAGVAQGSGGGGERWLQGLGPPRGRGLSTAPIDKGHECELCGTMEA 168
+R S+A KA P G G GG G+ P+G G P ++GH C G EA
Sbjct: 20 KRRSQALKASDPLSPGGPAGKGGAGD--------PQGAGAD--PGNQGHRCGRMGVTEA 68
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 33.1 bits (74), Expect = 0.14
Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 66 HLPQAKAINPHHTASLSPAGRGAQRPPERFLPSSVSAGSAARTLRRGSEARKAQTPRPAG 125
+LP A+ P + AS SP G GAQ P LPS + G L G E P P
Sbjct: 300 NLPPPPALRPLNNASASPPGLGAQ-PLPGHLPSPHAMGQGMGGLPPGPEKGPTLAPSPHS 358
Query: 126 VAQGS 130
+ S
Sbjct: 359 LPPAS 363
Score = 33.1 bits (74), Expect = 0.14
Identities = 29/82 (35%), Positives = 36/82 (43%), Gaps = 10/82 (12%)
Query: 72 AINPHHTASLSPAGRGAQRPPERFLPSSVSAGSAARTLRRGSEARKAQTPRPAGVAQGSG 131
A +PH SL PA A PP RF SS S+ SAA + S + A +P PA A S
Sbjct: 353 APSPH---SLPPASSSAPAPPMRFPYSSSSSSSAAASSSSSSSSSSA-SPFPASQALPS- 407
Query: 132 GGGERWLQGLGPPRGRGLSTAP 153
+ PP +S P
Sbjct: 408 -----YPHSFPPPTSLSVSNQP 424
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 33.1 bits (74), Expect = 0.14
Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 66 HLPQAKAINPHHTASLSPAGRGAQRPPERFLPSSVSAGSAARTLRRGSEARKAQTPRPAG 125
+LP A+ P + AS SP G GAQ P LPS + G L G E P P
Sbjct: 300 NLPPPPALRPLNNASASPPGLGAQ-PLPGHLPSPHAMGQGMGGLPPGPEKGPTLAPSPHS 358
Query: 126 VAQGS 130
+ S
Sbjct: 359 LPPAS 363
Score = 33.1 bits (74), Expect = 0.14
Identities = 29/82 (35%), Positives = 36/82 (43%), Gaps = 10/82 (12%)
Query: 72 AINPHHTASLSPAGRGAQRPPERFLPSSVSAGSAARTLRRGSEARKAQTPRPAGVAQGSG 131
A +PH SL PA A PP RF SS S+ SAA + S + A +P PA A S
Sbjct: 353 APSPH---SLPPASSSAPAPPMRFPYSSSSSSSAAASSSSSSSSSSA-SPFPASQALPS- 407
Query: 132 GGGERWLQGLGPPRGRGLSTAP 153
+ PP +S P
Sbjct: 408 -----YPHSFPPPTSLSVSNQP 424
>gi|22027595 alpha 1 type XIII collagen isoform 12 [Homo sapiens]
Length = 691
Score = 33.1 bits (74), Expect = 0.14
Identities = 31/100 (31%), Positives = 40/100 (40%), Gaps = 14/100 (14%)
Query: 75 PHHTASLSPAGR-------GAQRPPERFLPSSVSA-----GSAARTLRRGSEARKAQTPR 122
P H P G+ G Q PP + P V GS +G E +A +P
Sbjct: 493 PGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKG-ETGQAGSPG 551
Query: 123 PAGVAQGSGGGGERWLQGLGPPRGR-GLSTAPIDKGHECE 161
G A G G LQG+ P+G GL A +KG + E
Sbjct: 552 EKGEAGEKGNPGAEGLQGVPGPKGEAGLDGAKGEKGFQGE 591
>gi|22027583 alpha 1 type XIII collagen isoform 7 [Homo sapiens]
Length = 703
Score = 33.1 bits (74), Expect = 0.14
Identities = 31/100 (31%), Positives = 40/100 (40%), Gaps = 14/100 (14%)
Query: 75 PHHTASLSPAGR-------GAQRPPERFLPSSVSA-----GSAARTLRRGSEARKAQTPR 122
P H P G+ G Q PP + P V GS +G E +A +P
Sbjct: 493 PGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKG-ETGQAGSPG 551
Query: 123 PAGVAQGSGGGGERWLQGLGPPRGR-GLSTAPIDKGHECE 161
G A G G LQG+ P+G GL A +KG + E
Sbjct: 552 EKGEAGEKGNPGAEGLQGVPGPKGEAGLDGAKGEKGFQGE 591
>gi|14249150 single stranded DNA binding protein 4 isoform a [Homo
sapiens]
Length = 385
Score = 33.1 bits (74), Expect = 0.14
Identities = 29/84 (34%), Positives = 36/84 (42%), Gaps = 10/84 (11%)
Query: 64 SRHLPQAKAINPHHTASLSPAGRGAQRPPERFLPSSVSAG-SAARTLRRGSEARKAQTPR 122
S H P A + PH +SP G RP R +PS AG ++ L G A P
Sbjct: 131 SPHNPNAPMMGPHGQPFMSPRFPGGPRPTLR-MPSQPPAGLPGSQPLLPG-----AMEPS 184
Query: 123 PAGVAQGSGGGGERWLQGLGPPRG 146
P S GG +Q + PPRG
Sbjct: 185 PRAQGHPSMGGP---MQRVTPPRG 205
>gi|239757337 PREDICTED: hypothetical protein XP_002345251 [Homo
sapiens]
Length = 330
Score = 32.7 bits (73), Expect = 0.18
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 79 ASLSPAGRGAQRPPE-RFLPSSVSAGSAARTLRRGSEARKAQTPRPAGVAQGSGGGGERW 137
AS++P+ + P R+ SS SAG A G+ + PAG A+GSGGG W
Sbjct: 38 ASMTPSTASSMEGPRSRWKDSSGSAGEGAADC--GTAGGGGERGAPAGGARGSGGGPPPW 95
>gi|239751874 PREDICTED: hypothetical protein XP_002348034 [Homo
sapiens]
Length = 330
Score = 32.7 bits (73), Expect = 0.18
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 79 ASLSPAGRGAQRPPE-RFLPSSVSAGSAARTLRRGSEARKAQTPRPAGVAQGSGGGGERW 137
AS++P+ + P R+ SS SAG A G+ + PAG A+GSGGG W
Sbjct: 38 ASMTPSTASSMEGPRSRWKDSSGSAGEGAADC--GTAGGGGERGAPAGGARGSGGGPPPW 95
>gi|169206489 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 32.7 bits (73), Expect = 0.18
Identities = 45/148 (30%), Positives = 63/148 (42%), Gaps = 17/148 (11%)
Query: 11 RASARVSLEPSTHAWEFQIPSLGRNLHVSPGTVLSDLQPLG---ITFPVFENSERSSRHL 67
R+S L+PS A +P+ R H SP ++ + LG V + + R+ L
Sbjct: 287 RSSREPLLDPSKAARASALPT-ARVAHASPPSLAAAQWRLGGGKRKPTVLKGAVRTD--L 343
Query: 68 PQAKAINPHHTASLSPA-GRGAQRPPERFLPSSVSAGSAARTLRRGSEARKAQTPRPAGV 126
A+ +P +L PA G ER S ARTL S AR + P P G
Sbjct: 344 STAEEEDPRSGRALEPAQGSELWARAERH-----GGSSGARTLPTPSRARPGK-PAPRGS 397
Query: 127 AQGS----GGGGERWLQGLGPPRGRGLS 150
A + GGGG Q +G RG G++
Sbjct: 398 APPARLRGGGGGSGLTQLVGSGRGSGVT 425
>gi|239746363 PREDICTED: hypothetical protein XP_002343737 [Homo
sapiens]
Length = 179
Score = 32.7 bits (73), Expect = 0.18
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 79 ASLSPAGRGAQRPPE-RFLPSSVSAGSAARTLRRGSEARKAQTPRPAGVAQGSGGGGERW 137
AS++P+ + P R+ SS SAG A G+ + PAG A+GSGGG W
Sbjct: 38 ASMTPSTASSMEGPRSRWKDSSGSAGEGAADC--GTAGGGGERGAPAGGARGSGGGPPPW 95
>gi|169205942 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 32.7 bits (73), Expect = 0.18
Identities = 45/148 (30%), Positives = 63/148 (42%), Gaps = 17/148 (11%)
Query: 11 RASARVSLEPSTHAWEFQIPSLGRNLHVSPGTVLSDLQPLG---ITFPVFENSERSSRHL 67
R+S L+PS A +P+ R H SP ++ + LG V + + R+ L
Sbjct: 287 RSSREPLLDPSKAARASALPT-ARVAHASPPSLAAAQWRLGGGKRKPTVLKGAVRTD--L 343
Query: 68 PQAKAINPHHTASLSPA-GRGAQRPPERFLPSSVSAGSAARTLRRGSEARKAQTPRPAGV 126
A+ +P +L PA G ER S ARTL S AR + P P G
Sbjct: 344 STAEEEDPRSGRALEPAQGSELWARAERH-----GGSSGARTLPTPSRARPGK-PAPRGS 397
Query: 127 AQGS----GGGGERWLQGLGPPRGRGLS 150
A + GGGG Q +G RG G++
Sbjct: 398 APPARLRGGGGGSGLTQLVGSGRGSGVT 425
>gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo
sapiens]
Length = 4911
Score = 32.7 bits (73), Expect = 0.18
Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 6/129 (4%)
Query: 37 HVSPGTVLSDLQPLGITFPVFENSERSSRHLPQAK--AINPHHTASLSPAGRGAQRPPER 94
++ P T +S +G+ P + S P++K A + H+T S E
Sbjct: 810 NIMPTTYISVTPKIGMGKPAI-TKRKFSPGRPRSKQGAWSTHNTVSPPSWSPDISEGREI 868
Query: 95 FLPSSVSAGSAARTLR--RGSEARKAQTPRPAGVAQGSGGGGERWLQGLGPPRGRGLSTA 152
F P + GSA +++ RGS + PR AG++ G G + G+G G+STA
Sbjct: 869 FKPRQLP-GSAIWSIKVGRGSGFPGKRRPRGAGLSGRGGRGRSKLKSGIGAVVLPGVSTA 927
Query: 153 PIDKGHECE 161
I + E
Sbjct: 928 DISSNKDDE 936
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 32.7 bits (73), Expect = 0.18
Identities = 34/135 (25%), Positives = 49/135 (36%), Gaps = 17/135 (12%)
Query: 28 QIPSLGRNLHVSPGTVLSDLQPLGITFPVFE------------NSERSSRHLPQAKAINP 75
Q L + L PGTV +QP G T P + SE+ S P KA+
Sbjct: 334 QPSGLTKPLAQQPGTVKPPVQPPGTTKPPAQPLGPAKPPAQQTGSEKPSSEQPGPKALAQ 393
Query: 76 HHTASLSPAGR-GAQRPPERFL----PSSVSAGSAARTLRRGSEARKAQTPRPAGVAQGS 130
+PA + G +PP + + P + G + G Q P P +
Sbjct: 394 PPGVGKTPAQQPGPAKPPTQQVGTPKPLAQQPGLQSPAKAPGPTKTPVQQPGPGKIPAQQ 453
Query: 131 GGGGERWLQGLGPPR 145
G G+ Q GP +
Sbjct: 454 AGPGKTSAQQTGPTK 468
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 32.7 bits (73), Expect = 0.18
Identities = 34/135 (25%), Positives = 49/135 (36%), Gaps = 17/135 (12%)
Query: 28 QIPSLGRNLHVSPGTVLSDLQPLGITFPVFE------------NSERSSRHLPQAKAINP 75
Q L + L PGTV +QP G T P + SE+ S P KA+
Sbjct: 334 QPSGLTKPLAQQPGTVKPPVQPPGTTKPPAQPLGPAKPPAQQTGSEKPSSEQPGPKALAQ 393
Query: 76 HHTASLSPAGR-GAQRPPERFL----PSSVSAGSAARTLRRGSEARKAQTPRPAGVAQGS 130
+PA + G +PP + + P + G + G Q P P +
Sbjct: 394 PPGVGKTPAQQPGPAKPPTQQVGTPKPLAQQPGLQSPAKAPGPTKTPVQQPGPGKIPAQQ 453
Query: 131 GGGGERWLQGLGPPR 145
G G+ Q GP +
Sbjct: 454 AGPGKTSAQQTGPTK 468
>gi|239755571 PREDICTED: hypothetical protein [Homo sapiens]
Length = 261
Score = 32.3 bits (72), Expect = 0.23
Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Query: 86 RGAQRPPERFLPSSVSAGSAARTLRRGSEARKAQTPRP-----AGVAQGSGGGGERWLQG 140
R A+ P +PSS G LRR S A + P P AG A G+ +
Sbjct: 77 RPAEEPTPAPMPSSAPRGPTEPALRRPSSADRPLAPGPSSSPGAGRAPGAMASPSGSSKA 136
Query: 141 LGPPRGR 147
G PRGR
Sbjct: 137 TGKPRGR 143
>gi|169171345 PREDICTED: hypothetical protein [Homo sapiens]
Length = 249
Score = 32.3 bits (72), Expect = 0.23
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
Query: 83 PAGR--GAQRPPERFLPSSVSAGSAARTLRRGSEARKAQTPRPA-------GVAQGSGGG 133
PAG AQ PP P +AG+ +RG AR A+ P+P G A SG G
Sbjct: 132 PAGSLPAAQSPPPAERPGRDAAGARVCGTQRGGCARAAEAPQPTGGRGCSRGSATASGVG 191
Query: 134 GE 135
G+
Sbjct: 192 GK 193
>gi|169172205 PREDICTED: hypothetical protein [Homo sapiens]
Length = 249
Score = 32.3 bits (72), Expect = 0.23
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
Query: 83 PAGR--GAQRPPERFLPSSVSAGSAARTLRRGSEARKAQTPRPA-------GVAQGSGGG 133
PAG AQ PP P +AG+ +RG AR A+ P+P G A SG G
Sbjct: 132 PAGSLPAAQSPPPAERPGRDAAGARVCGTQRGGCARAAEAPQPTGGRGCSRGSATASGVG 191
Query: 134 GE 135
G+
Sbjct: 192 GK 193
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.132 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,768,843
Number of Sequences: 37866
Number of extensions: 494984
Number of successful extensions: 2350
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 159
Number of HSP's that attempted gapping in prelim test: 2222
Number of HSP's gapped (non-prelim): 290
length of query: 183
length of database: 18,247,518
effective HSP length: 96
effective length of query: 87
effective length of database: 14,612,382
effective search space: 1271277234
effective search space used: 1271277234
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.