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Search of human proteins with 239754830
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239754830 PREDICTED: hypothetical protein [Homo sapiens]
(320 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754830 PREDICTED: hypothetical protein [Homo sapiens] 657 0.0
gi|203096856 kinesin family member 7 [Homo sapiens] 39 0.008
gi|139394604 bromo adjacent homology domain containing 1 [Homo s... 33 0.26
gi|157311635 FAM83H [Homo sapiens] 33 0.34
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 33 0.34
gi|169175458 PREDICTED: similar to hCG2040468 [Homo sapiens] 32 0.58
gi|8051631 RNA binding protein (autoantigenic, hnRNP-associated ... 32 0.58
gi|21396480 RNA binding protein (autoantigenic, hnRNP-associated... 32 0.58
gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens] 32 0.98
gi|239757699 PREDICTED: hypothetical protein [Homo sapiens] 32 0.98
gi|239752675 PREDICTED: hypothetical protein XP_002345422 [Homo ... 32 0.98
gi|239752184 PREDICTED: hypothetical protein XP_002348161 [Homo ... 32 0.98
gi|239747214 PREDICTED: hypothetical protein XP_002346940 [Homo ... 32 0.98
gi|239746707 PREDICTED: hypothetical protein XP_002343834 [Homo ... 32 0.98
gi|239741020 PREDICTED: hypothetical protein XP_002342065 [Homo ... 32 0.98
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 32 0.98
gi|154759255 collagen, type XXVIII precursor [Homo sapiens] 32 0.98
gi|156616290 collagen type VI alpha 6 [Homo sapiens] 31 1.3
gi|62945417 dystrophia myotonica-containing WD repeat motif prot... 31 1.3
gi|32171194 spermatogenesis associated 12 [Homo sapiens] 31 1.3
gi|149408146 TOX high mobility group box family member 2 isoform... 31 1.7
gi|149408144 TOX high mobility group box family member 2 isoform... 31 1.7
gi|149408141 TOX high mobility group box family member 2 isoform... 31 1.7
gi|14249636 TOX high mobility group box family member 2 isoform ... 31 1.7
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 31 1.7
gi|13899269 SRY-box 7 [Homo sapiens] 30 2.2
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens] 30 2.2
gi|24497536 homeobox C13 [Homo sapiens] 30 2.2
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 30 2.2
gi|13994236 cat eye syndrome chromosome region, candidate 6 isof... 30 2.9
>gi|239754830 PREDICTED: hypothetical protein [Homo sapiens]
Length = 320
Score = 657 bits (1695), Expect = 0.0
Identities = 320/320 (100%), Positives = 320/320 (100%)
Query: 1 MRLQDLAVFVQSSEEGQQYMVLRPADFIAQSMADTQALRSSPSAQSEGSSAEREPPRVDV 60
MRLQDLAVFVQSSEEGQQYMVLRPADFIAQSMADTQALRSSPSAQSEGSSAEREPPRVDV
Sbjct: 1 MRLQDLAVFVQSSEEGQQYMVLRPADFIAQSMADTQALRSSPSAQSEGSSAEREPPRVDV 60
Query: 61 HLGHANKLEWCGEAEGGGKRGVTEEVGQLIPLLQLVGGIVEHPPVEAAGVFDFQLVDVAT 120
HLGHANKLEWCGEAEGGGKRGVTEEVGQLIPLLQLVGGIVEHPPVEAAGVFDFQLVDVAT
Sbjct: 61 HLGHANKLEWCGEAEGGGKRGVTEEVGQLIPLLQLVGGIVEHPPVEAAGVFDFQLVDVAT 120
Query: 121 QAHELSGQLLVLQPHLPTHQFLPEPGYSFIDALKAFQLASGQGSGTLAGTPGRRGVLPSL 180
QAHELSGQLLVLQPHLPTHQFLPEPGYSFIDALKAFQLASGQGSGTLAGTPGRRGVLPSL
Sbjct: 121 QAHELSGQLLVLQPHLPTHQFLPEPGYSFIDALKAFQLASGQGSGTLAGTPGRRGVLPSL 180
Query: 181 SQGEQGLLPPTLPLLQARLWLRSRPREGPGLLLQPGLPFQVGGPAGLQPQFLGEGLQAPE 240
SQGEQGLLPPTLPLLQARLWLRSRPREGPGLLLQPGLPFQVGGPAGLQPQFLGEGLQAPE
Sbjct: 181 SQGEQGLLPPTLPLLQARLWLRSRPREGPGLLLQPGLPFQVGGPAGLQPQFLGEGLQAPE 240
Query: 241 VVIGWCGCSRPLFCTHFFHVDLGHRHSTVCPGSRTCEGTGGAGGGLVGGTVGSRSGMASS 300
VVIGWCGCSRPLFCTHFFHVDLGHRHSTVCPGSRTCEGTGGAGGGLVGGTVGSRSGMASS
Sbjct: 241 VVIGWCGCSRPLFCTHFFHVDLGHRHSTVCPGSRTCEGTGGAGGGLVGGTVGSRSGMASS 300
Query: 301 RCPRAFPGQEPASEAGWQGS 320
RCPRAFPGQEPASEAGWQGS
Sbjct: 301 RCPRAFPGQEPASEAGWQGS 320
>gi|203096856 kinesin family member 7 [Homo sapiens]
Length = 1343
Score = 38.5 bits (88), Expect = 0.008
Identities = 37/129 (28%), Positives = 54/129 (41%), Gaps = 15/129 (11%)
Query: 10 VQSSEEGQQYMVLRPADFIAQSMADTQALRSSPSAQSEGSSAEREPPRVDVHLGHANKLE 69
V S + G+Q R A A+ + + L S SA SE E EPPR +HL N++
Sbjct: 589 VGSEQRGEQVTNGREAG--AELLTEVNRLGSGSSAASEEEEEEEEPPRRTLHL-RRNRIS 645
Query: 70 WCGEAEGG---------GKRGVTEEVGQLIPLLQLVGGI---VEHPPVEAAGVFDFQLVD 117
C + G G EE+ IP + VGG V+ V A +++L
Sbjct: 646 NCSQRAGARPGSLPERKGPELCLEELDAAIPGSRAVGGSKARVQARQVPPATASEWRLAQ 705
Query: 118 VATQAHELS 126
+ EL+
Sbjct: 706 AQQKIRELA 714
>gi|139394604 bromo adjacent homology domain containing 1 [Homo
sapiens]
Length = 780
Score = 33.5 bits (75), Expect = 0.26
Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 13/101 (12%)
Query: 143 PEPGYSFIDALKAFQLASGQGSGTLAGTPGRRGV----LPSLSQGEQGLLPPTLPLLQAR 198
P P + ++ + G SG AG PG +G PS + + P PL
Sbjct: 245 PRPKWPKVNGKNYPKAWQGASSGEAAGPPGWQGCPDEPWPSATPCGPSVQPSHQPL---- 300
Query: 199 LWLRSRPREGPGLLLQPGLPFQVGGPAGLQPQFLGEGLQAP 239
S+ E P L L+P LP +GG A L+P+ G ++P
Sbjct: 301 ----SKALESP-LGLRPHLPLLMGGQAALKPEPGRPGEESP 336
>gi|157311635 FAM83H [Homo sapiens]
Length = 1179
Score = 33.1 bits (74), Expect = 0.34
Identities = 42/153 (27%), Positives = 56/153 (36%), Gaps = 27/153 (17%)
Query: 145 PGYSFIDALKAFQLASGQGSGTLAGTPG----------RRGVLPSLSQGEQGL-----LP 189
P + + + A+ LA G+G L G PG +R L E+GL L
Sbjct: 286 PSAAALARMDAYALAPYAGAGPLVGVPGVGAPTPFSFPKRAHLLFPPPREEGLGFPSFLD 345
Query: 190 PTLPLLQARLWLRSRPREGPGLLLQPGLPFQVGGPAGLQPQFLGEGLQAPEVVIGWCGCS 249
P L A + R P PG L+P AGL+P L L+A G +
Sbjct: 346 PDRHFLSA--FRREEPPRMPGGALEP--------HAGLRP--LSRRLEAEAGPAGELAGA 393
Query: 250 RPLFCTHFFHVDLGHRHSTVCPGSRTCEGTGGA 282
R F +D RHS G+ E A
Sbjct: 394 RGFFQARHLEMDAFKRHSFATEGAGAVENFAAA 426
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 33.1 bits (74), Expect = 0.34
Identities = 52/168 (30%), Positives = 60/168 (35%), Gaps = 29/168 (17%)
Query: 163 GSGTLAGTPGRRGVLPSL-SQGEQGLLPPTLPLLQARLWLRSRPREGPGLLLQPGLPFQV 221
G+ L GTPG+ G + GE+G P PR PG PGLP
Sbjct: 937 GAPGLRGTPGKDGERGEKGAAGEEGSPGPV------------GPRGDPGA---PGLPGPP 981
Query: 222 GGPAGLQPQFLGE-GLQAPEVVIGWCG-------CSRPLFCTHFFHVDLGHRHSTVCPGS 273
G +P G GL P CG C+ C D G PGS
Sbjct: 982 GKGKDGEPGLRGSPGLPGPLGTKAACGKVRGSENCALGGQCVKG---DRGAPGIPGSPGS 1038
Query: 274 RTCEGTGGAGGGLVGGTVGSRSGMASSRCPRAFPG-QEPASEAGWQGS 320
R G G AG G G + G SR FPG Q PA G G+
Sbjct: 1039 RGDPGIGVAGPPGPSGPPGDK-GSPGSRGLPGFPGPQGPAGRDGAPGN 1085
>gi|169175458 PREDICTED: similar to hCG2040468 [Homo sapiens]
Length = 376
Score = 32.3 bits (72), Expect = 0.58
Identities = 41/138 (29%), Positives = 55/138 (39%), Gaps = 17/138 (12%)
Query: 120 TQAHELSGQLLVLQPHLPTHQFLPEPGYSFIDALKAFQLASGQGSGTLAGTPGRRGVLPS 179
T L LL PHLP S + AL A +L S A G G
Sbjct: 149 TDTGPLHPLLLCQDPHLPA----AAARGSLLRALDAAELTSPHTPDEEAQFAGGAGNPVD 204
Query: 180 LSQGEQGLLPPTLPLLQARLWLRSRPREGP---GLLLQPGLPF-QVGGPAGLQPQFLGEG 235
++ G L + ++W + P EG GL ++P +P VGGPA L P+ EG
Sbjct: 205 TAEASVGSL-------KGQIWGPAGP-EGKWPAGLQVRPSVPLGYVGGPAPLTPRSDQEG 256
Query: 236 L-QAPEVVIGWCGCSRPL 252
+ E V G C P+
Sbjct: 257 IWPLSEQVTGPCSSGAPV 274
>gi|8051631 RNA binding protein (autoantigenic, hnRNP-associated
with lethal yellow) long isoform [Homo sapiens]
Length = 306
Score = 32.3 bits (72), Expect = 0.58
Identities = 19/39 (48%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 278 GTGGAGGGLVGGTVGSRSGMASSRCPRAFPGQEPASEAG 316
G GG GGG GG G G SSR P P + SEAG
Sbjct: 231 GGGGGGGGSGGGGSGGGGGGGSSRPPA--PQENTTSEAG 267
>gi|21396480 RNA binding protein (autoantigenic, hnRNP-associated
with lethal yellow) short isoform [Homo sapiens]
Length = 290
Score = 32.3 bits (72), Expect = 0.58
Identities = 19/39 (48%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 278 GTGGAGGGLVGGTVGSRSGMASSRCPRAFPGQEPASEAG 316
G GG GGG GG G G SSR P P + SEAG
Sbjct: 215 GGGGGGGGSGGGGSGGGGGGGSSRPPA--PQENTTSEAG 251
>gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens]
Length = 1388
Score = 31.6 bits (70), Expect = 0.98
Identities = 44/153 (28%), Positives = 59/153 (38%), Gaps = 19/153 (12%)
Query: 144 EPGYSFIDALKAFQLASGQGSGTLAGTPGRRGVL-PSLSQGEQGLLPPTLPLLQARLWLR 202
EPG + + +L +G + G PG G P +GE GL P P L+
Sbjct: 863 EPGAILTEDIPLERLMGKKGEPGMHGAPGPMGPKGPPGHKGEFGL--PGRPGRPGLNGLK 920
Query: 203 SRPREGPGLLLQ--PGLPFQVG--GPAGLQPQFLGEGLQAPEVVIGWCGCSRPLFCTH-- 256
+ PG+++Q PGLP G GP G G P C P+ H
Sbjct: 921 GTKGD-PGVIMQGPPGLPGPPGPPGPPGAVINIKGAIFPIPVRP----HCKMPVDTAHPG 975
Query: 257 -----FFHVDLGHRHSTVCPGSRTCEGTGGAGG 284
FH G + S PGS+ +G GA G
Sbjct: 976 SPELITFHGVKGEKGSWGLPGSKGEKGDQGAQG 1008
>gi|239757699 PREDICTED: hypothetical protein [Homo sapiens]
Length = 270
Score = 31.6 bits (70), Expect = 0.98
Identities = 26/70 (37%), Positives = 29/70 (41%), Gaps = 19/70 (27%)
Query: 167 LAGTPGRRGVLPSLSQGEQGLLPPTLPLL--------QARLW---LRSRPRE-------- 207
L GT G + P +G LLP LPLL + RLW LR PR
Sbjct: 136 LRGTAGGKAQGPGNPEGPSSLLPRLLPLLLLSGATRDRRRLWGEGLRLAPRRSRDEGRRA 195
Query: 208 GPGLLLQPGL 217
PG L PGL
Sbjct: 196 SPGNLASPGL 205
>gi|239752675 PREDICTED: hypothetical protein XP_002345422 [Homo
sapiens]
Length = 247
Score = 31.6 bits (70), Expect = 0.98
Identities = 26/68 (38%), Positives = 30/68 (44%), Gaps = 17/68 (25%)
Query: 266 HSTVCPGSRTCEGTG----GAGGGLVGG---TVGSRSG---MASS------RCPRAFPGQ 309
H + CPG R C G G A L G T+GS ASS RCPR+F +
Sbjct: 76 HGSSCPGGRGCGGAGTWGWKAASSLTRGEPRTIGSPEAGFPPASSRSSEWKRCPRSFSSK 135
Query: 310 EPASEAGW 317
E SE W
Sbjct: 136 E-LSECRW 142
>gi|239752184 PREDICTED: hypothetical protein XP_002348161 [Homo
sapiens]
Length = 270
Score = 31.6 bits (70), Expect = 0.98
Identities = 26/70 (37%), Positives = 29/70 (41%), Gaps = 19/70 (27%)
Query: 167 LAGTPGRRGVLPSLSQGEQGLLPPTLPLL--------QARLW---LRSRPRE-------- 207
L GT G + P +G LLP LPLL + RLW LR PR
Sbjct: 136 LRGTAGGKAQGPGNPEGPSSLLPRLLPLLLLSGATRDRRRLWGEGLRLAPRRSRDEGRRA 195
Query: 208 GPGLLLQPGL 217
PG L PGL
Sbjct: 196 SPGNLASPGL 205
>gi|239747214 PREDICTED: hypothetical protein XP_002346940 [Homo
sapiens]
Length = 247
Score = 31.6 bits (70), Expect = 0.98
Identities = 26/68 (38%), Positives = 30/68 (44%), Gaps = 17/68 (25%)
Query: 266 HSTVCPGSRTCEGTG----GAGGGLVGG---TVGSRSG---MASS------RCPRAFPGQ 309
H + CPG R C G G A L G T+GS ASS RCPR+F +
Sbjct: 76 HGSSCPGGRGCGGAGTWGWKAASSLTRGEPRTIGSPEAGFPPASSRSSEWKRCPRSFSSK 135
Query: 310 EPASEAGW 317
E SE W
Sbjct: 136 E-LSECRW 142
>gi|239746707 PREDICTED: hypothetical protein XP_002343834 [Homo
sapiens]
Length = 270
Score = 31.6 bits (70), Expect = 0.98
Identities = 26/70 (37%), Positives = 29/70 (41%), Gaps = 19/70 (27%)
Query: 167 LAGTPGRRGVLPSLSQGEQGLLPPTLPLL--------QARLW---LRSRPRE-------- 207
L GT G + P +G LLP LPLL + RLW LR PR
Sbjct: 136 LRGTAGGKAQGPGNPEGPSSLLPRLLPLLLLSGATRDRRRLWGEGLRLAPRRSRDEGRRA 195
Query: 208 GPGLLLQPGL 217
PG L PGL
Sbjct: 196 SPGNLASPGL 205
>gi|239741020 PREDICTED: hypothetical protein XP_002342065 [Homo
sapiens]
Length = 247
Score = 31.6 bits (70), Expect = 0.98
Identities = 26/68 (38%), Positives = 30/68 (44%), Gaps = 17/68 (25%)
Query: 266 HSTVCPGSRTCEGTG----GAGGGLVGG---TVGSRSG---MASS------RCPRAFPGQ 309
H + CPG R C G G A L G T+GS ASS RCPR+F +
Sbjct: 76 HGSSCPGGRGCGGAGTWGWKAASSLTRGEPRTIGSPEAGFPPASSRSSEWKRCPRSFSSK 135
Query: 310 EPASEAGW 317
E SE W
Sbjct: 136 E-LSECRW 142
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 31.6 bits (70), Expect = 0.98
Identities = 26/77 (33%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
Query: 162 QGSGTLAGTPGRRGVLPSLS-QGEQGLLPPTLPLLQARLWLRSRPREGPGLLLQPGLPFQ 220
QG G G+ G++ L G GL P W PR PG +PG P
Sbjct: 1558 QGPRGPPGLMGKEGIVGPLGILGPSGLPGPKGDKGSRGDWGLQGPRGPPGPRGRPGPPGP 1617
Query: 221 VGGPAGLQPQFLGEGLQ 237
GGP LQ LG Q
Sbjct: 1618 PGGPIQLQQDDLGAAFQ 1634
Score = 29.6 bits (65), Expect = 3.7
Identities = 56/190 (29%), Positives = 74/190 (38%), Gaps = 29/190 (15%)
Query: 143 PEPGYSFIDALKAFQLASGQGSGTLAGTPGRRGVL-----PSLSQGEQGLLPPTLPLLQA 197
P+ +I F L G L G PG+RG + P + GE+G PP L
Sbjct: 752 PKGSRGYIGLPGLFGLPGSDGERGLPGVPGKRGKMGMPGFPGVF-GERG--PPGLDGNPG 808
Query: 198 RLWLRSRPREGPGLLLQPGL--PFQVGGPAGLQPQF--LGE-GLQAPEVVIGWCGCSRPL 252
L L P PGL+ G+ P GP G++ +GE GL+ + G G S
Sbjct: 809 ELGLPGPPGV-PGLIGDLGVLGPIGYPGPKGMKGLMGSVGEPGLKGDKGEQGVPGVSG-- 865
Query: 253 FCTHFFHVDLGHRHSTVCPGSRTCEGTGGAGGGLVGGTVGSRS--GMASSRCPRAFPGQ- 309
F D G + PG+R G G L G VG + G P FPG
Sbjct: 866 --DPGFQGDKGSQGLPGFPGAR------GKPGPL--GKVGDKGSIGFPGPPGPEGFPGDI 915
Query: 310 EPASEAGWQG 319
P + G +G
Sbjct: 916 GPPGDNGPEG 925
>gi|154759255 collagen, type XXVIII precursor [Homo sapiens]
Length = 1125
Score = 31.6 bits (70), Expect = 0.98
Identities = 48/171 (28%), Positives = 65/171 (38%), Gaps = 18/171 (10%)
Query: 153 LKAFQLASGQGSGTLAGTPGRRGVLPSLSQGEQGLLPPTLPLLQARLWLRSRPREGPGLL 212
L+ + +G G G G+ SQGEQG+ P P +GP
Sbjct: 425 LQGLSIKGEKGDIGPVGPQGPMGIPGIGSQGEQGIQGPIGP----------PGPQGPAGQ 474
Query: 213 LQPGLPFQVG--GPAGLQPQFLGEGLQAPEVVIGWCGC-SRPLFCTHFFHVDLGHRHSTV 269
PG +VG GP G + +G G+Q P+ G G +P G +
Sbjct: 475 GLPGSKGEVGQMGPTGPRGP-VGIGVQGPKGEPGSIGLPGQPGVPGE--DGAAGKKGEAG 531
Query: 270 CPGSRTCEGTGGAGGGLVGGTVGSRSGMASSRCPRAFPGQE-PASEAGWQG 319
PG+R EG G G G G + G ++ R PG E P E G G
Sbjct: 532 LPGARGPEGPPGKGQPGPKGDEG-KKGSKGNQGQRGLPGPEGPKGEPGIMG 581
>gi|156616290 collagen type VI alpha 6 [Homo sapiens]
Length = 2263
Score = 31.2 bits (69), Expect = 1.3
Identities = 49/167 (29%), Positives = 63/167 (37%), Gaps = 47/167 (28%)
Query: 162 QGSGTLAGTPGRRGVLPSLSQGEQGLLPPTLPLLQARLWLRSRPREGPGLLLQPGLPFQV 221
QGS GTPG RG +GL R PG PG+ +
Sbjct: 1490 QGSPGKRGTPGDRGA--------KGL------------------RGDPG---APGVDSSI 1520
Query: 222 GGPAGLQPQFLGEGLQAPEVVIGWCG-----CSRPLFCTHFFHVDLGHRHSTVCPGSRTC 276
GP GL+ + +G + GW G SR H G + + PG
Sbjct: 1521 EGPTGLKGERGRQGRR------GWPGPPGTPGSRRKTAAHGRRGHTGPQGTAGIPGPDGL 1574
Query: 277 EGTGGAGG--GLVG--GTVGSRSGMASSRCPRAFPGQEPASEAGWQG 319
EG+ G G G G G G + G+ S+ P+ PG P EAG QG
Sbjct: 1575 EGSLGLKGPQGPRGEAGVKGEKGGV-GSKGPQGPPG--PGGEAGNQG 1618
>gi|62945417 dystrophia myotonica-containing WD repeat motif protein
[Homo sapiens]
Length = 674
Score = 31.2 bits (69), Expect = 1.3
Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 10/72 (13%)
Query: 166 TLAGTPGRRGVLPSLSQGEQGLLPPTLPLLQARLWLRSRPRE-------GPGLLLQPGLP 218
TL GTPG S S+G + P PL ++ S P GPG+ +PG P
Sbjct: 461 TLPGTPGTTPPAASSSRGGE---PGPGPLPRSLSRSNSLPHPAGGGKAGGPGVAAEPGTP 517
Query: 219 FQVGGPAGLQPQ 230
F +G A L Q
Sbjct: 518 FSIGRFATLTLQ 529
>gi|32171194 spermatogenesis associated 12 [Homo sapiens]
Length = 190
Score = 31.2 bits (69), Expect = 1.3
Identities = 35/98 (35%), Positives = 43/98 (43%), Gaps = 15/98 (15%)
Query: 158 LASGQGSGTLAGTPGRRGVLPSLS-QGE-------QGLLPP--TLPLLQARLWLRSRPRE 207
LAS QG G L PG LP L+ QG+ Q L +L + +++ L RP
Sbjct: 51 LASCQGPGVL---PGAASALPELTFQGDVCQSETCQRYLQAAISLDIAVSQINLLGRPSS 107
Query: 208 GPGLLLQPGLPFQVGGPAGLQPQFLGEGLQAPEVVIGW 245
P LL+Q G QV PQFLG E GW
Sbjct: 108 PPALLIQQGSCEQV--IHNSTPQFLGMEDGDNERTTGW 143
>gi|149408146 TOX high mobility group box family member 2 isoform b
[Homo sapiens]
Length = 488
Score = 30.8 bits (68), Expect = 1.7
Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 4/96 (4%)
Query: 120 TQAHELSGQLLVLQPHLPTHQFLPEPGYSFIDALKAFQLASGQGSGTLAGTPGRRGVLPS 179
T++ + + +L P P + + L+AF+ SG +LA T G + +LP
Sbjct: 310 TKSTQANPPAKMLPPKQPMYAMPGLASFLTPSDLQAFR--SGASPASLARTLGSKSLLPG 367
Query: 180 LSQGEQGLLPPTLPLLQARLWLRSRPREGPGLLLQP 215
LS PP+ PL S P G LL P
Sbjct: 368 LSASPPP--PPSFPLSPTLHQQLSLPPHAQGALLSP 401
>gi|149408144 TOX high mobility group box family member 2 isoform a
[Homo sapiens]
Length = 506
Score = 30.8 bits (68), Expect = 1.7
Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 4/96 (4%)
Query: 120 TQAHELSGQLLVLQPHLPTHQFLPEPGYSFIDALKAFQLASGQGSGTLAGTPGRRGVLPS 179
T++ + + +L P P + + L+AF+ SG +LA T G + +LP
Sbjct: 328 TKSTQANPPAKMLPPKQPMYAMPGLASFLTPSDLQAFR--SGASPASLARTLGSKSLLPG 385
Query: 180 LSQGEQGLLPPTLPLLQARLWLRSRPREGPGLLLQP 215
LS PP+ PL S P G LL P
Sbjct: 386 LSASPPP--PPSFPLSPTLHQQLSLPPHAQGALLSP 419
>gi|149408141 TOX high mobility group box family member 2 isoform c
[Homo sapiens]
Length = 464
Score = 30.8 bits (68), Expect = 1.7
Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 4/96 (4%)
Query: 120 TQAHELSGQLLVLQPHLPTHQFLPEPGYSFIDALKAFQLASGQGSGTLAGTPGRRGVLPS 179
T++ + + +L P P + + L+AF+ SG +LA T G + +LP
Sbjct: 286 TKSTQANPPAKMLPPKQPMYAMPGLASFLTPSDLQAFR--SGASPASLARTLGSKSLLPG 343
Query: 180 LSQGEQGLLPPTLPLLQARLWLRSRPREGPGLLLQP 215
LS PP+ PL S P G LL P
Sbjct: 344 LSASPPP--PPSFPLSPTLHQQLSLPPHAQGALLSP 377
>gi|14249636 TOX high mobility group box family member 2 isoform c
[Homo sapiens]
Length = 464
Score = 30.8 bits (68), Expect = 1.7
Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 4/96 (4%)
Query: 120 TQAHELSGQLLVLQPHLPTHQFLPEPGYSFIDALKAFQLASGQGSGTLAGTPGRRGVLPS 179
T++ + + +L P P + + L+AF+ SG +LA T G + +LP
Sbjct: 286 TKSTQANPPAKMLPPKQPMYAMPGLASFLTPSDLQAFR--SGASPASLARTLGSKSLLPG 343
Query: 180 LSQGEQGLLPPTLPLLQARLWLRSRPREGPGLLLQP 215
LS PP+ PL S P G LL P
Sbjct: 344 LSASPPP--PPSFPLSPTLHQQLSLPPHAQGALLSP 377
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 30.8 bits (68), Expect = 1.7
Identities = 53/180 (29%), Positives = 63/180 (35%), Gaps = 26/180 (14%)
Query: 145 PGYSFIDALKAFQLASGQGSGTLAGTPGRRGVLPSLSQGEQGLLPPT---LPLLQARLWL 201
PG + A L QG G PG RG GL+ PT +P L
Sbjct: 275 PGVDGVGVPGAAGLPGPQGPSGAKGEPGTRG--------PPGLIGPTGYGMPGLPGPKGD 326
Query: 202 RSRPREGPGLLLQPGLPFQVGGPAGLQPQFLG--EGLQAPEVVIGWCGCSRPLFCTHFFH 259
R P PGLL G P + G P PQ LG GL + G G P
Sbjct: 327 RG-PAGVPGLLGDRGEPGEDGEPGEQGPQGLGGPPGLPGSAGLPGRRGPPGP-------K 378
Query: 260 VDLGHRHSTVCPGSRTCEGTGGAGGGLVGGTVGSRSGMASSRCPRAFPGQEPASEAGWQG 319
+ G PG R +G G G G G R G+ + P G P E G+ G
Sbjct: 379 GEAGPGGPPGVPGIRGDQGPSGLAG--KPGVPGER-GLPGAHGPPGPTG--PKGEPGFTG 433
>gi|13899269 SRY-box 7 [Homo sapiens]
Length = 388
Score = 30.4 bits (67), Expect = 2.2
Identities = 52/189 (27%), Positives = 70/189 (37%), Gaps = 15/189 (7%)
Query: 27 FIAQSMADTQALRSSPSAQSEGSSAEREPPRVDVHLGHA-NKLEWC---GEAEGGGKRGV 82
F+ S++ Q + S G+ E+E R + G A L C G A GGG G
Sbjct: 133 FLLSSLSRDQNALPEKRSGSRGALGEKED-RGEYSPGTALPSLRGCYHEGPAGGGG--GG 189
Query: 83 TEEVGQLIPLLQLVGGIVEHPPVEAAGVFDFQLVDVATQAHELSGQLLVLQPHLPTHQFL 142
T P G+ P + V + + ++ E G + PHLP H +
Sbjct: 190 TPSSVDTYPY-----GLPTPPEMSPLDVLEPEQTFFSSPCQEEHGHPRRI-PHLPGHPYS 243
Query: 143 PEPGYSFIDALKAF-QLASGQGSGTLAGTPGRRGVLPSLSQGEQGLLPPTLPLLQARLWL 201
PE S + LA GQ G +P G PS + P LQA L
Sbjct: 244 PEYAPSPLHCSHPLGSLALGQSPGVSMMSP-VPGCPPSPAYYSPATYHPLHSNLQAHLGQ 302
Query: 202 RSRPREGPG 210
S P E PG
Sbjct: 303 LSPPPEHPG 311
>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
Length = 1073
Score = 30.4 bits (67), Expect = 2.2
Identities = 49/157 (31%), Positives = 56/157 (35%), Gaps = 35/157 (22%)
Query: 163 GSGTLAGTPGRRGVLPSL-SQGEQGLLPPTLPLLQARLWLRSRPREGPGLLLQPGLPFQV 221
G+ L GTPG+ G + GE+G P PR PG PGLP
Sbjct: 419 GAPGLRGTPGKDGERGEKGAAGEEGSPGPV------------GPRGDPGA---PGLPGPP 463
Query: 222 GGPAGLQPQFLGE-GLQAPEVVIGWCGCSRPLFCTHFFHVDLGHRHSTVCPGSRTCEGTG 280
G +P G GL P +G G D G PGSR G G
Sbjct: 464 GKGKDGEPGLRGSPGLPGP---LGTKG-------------DRGAPGIPGSPGSRGDPGIG 507
Query: 281 GAGGGLVGGTVGSRSGMASSRCPRAFPG-QEPASEAG 316
AG G G + G SR FPG Q PA G
Sbjct: 508 VAGPPGPSGPPGDK-GSPGSRGLPGFPGPQGPAGRDG 543
>gi|24497536 homeobox C13 [Homo sapiens]
Length = 330
Score = 30.4 bits (67), Expect = 2.2
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 278 GTGGAGGGLVGGTVGSRSGMASSRCPRAFPGQEPASE 314
G GG GGG GGT G+ G C A PG+ P+ +
Sbjct: 27 GIGGGGGGGGGGTGGAGGG-----CSGASPGKAPSMD 58
Score = 28.5 bits (62), Expect = 8.3
Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
Query: 278 GTGGAGGGLVGGTVG---SRSGMASSRCP 303
GTGGAGGG G + G S G+ SS CP
Sbjct: 38 GTGGAGGGCSGASPGKAPSMDGLGSS-CP 65
>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
Length = 680
Score = 30.4 bits (67), Expect = 2.2
Identities = 49/172 (28%), Positives = 59/172 (34%), Gaps = 32/172 (18%)
Query: 159 ASGQGSGTLAGTPGRRGVLPSLSQGEQGLLPPTLPLLQARLWLRSRPREGPGLLLQPGLP 218
A +G +G PG+ G QGE GL P P + PG+ PG P
Sbjct: 68 AGPRGHPGPSGPPGKPGYGSPGLQGEPGLPGPPGPSAVGK----------PGVPGLPGKP 117
Query: 219 FQVG--------GPAGLQPQFLGEGLQAPEVVIGWCGCSRPLFCTHFFHVDLGHRHSTVC 270
+ G GPAGL G P + G G S P G + T
Sbjct: 118 GERGPYGPKGDVGPAGLPGP---RGPPGPPGIPGPAGISVP--------GKPGQQGPTGA 166
Query: 271 PGSRTCEGTGGAGG--GLVGGTVGSRSGMASSRCPRAFPG-QEPASEAGWQG 319
PG R G GA G G+ G G R PG Q P +G G
Sbjct: 167 PGPRGFPGEKGAPGVPGMNGQKGEMGYGAPGRPGERGLPGPQGPTGPSGPPG 218
>gi|13994236 cat eye syndrome chromosome region, candidate 6 isoform
a [Homo sapiens]
Length = 578
Score = 30.0 bits (66), Expect = 2.9
Identities = 28/101 (27%), Positives = 32/101 (31%), Gaps = 16/101 (15%)
Query: 203 SRPREGPGLLLQPGLPFQVGGPAGLQPQFLGEGLQAPEVVIGWCGCSRPLFCTHFFHVDL 262
S+P LL P P QVG PAG P S P D
Sbjct: 86 SKPLVPNAALLGP--PAQVGAPAGPAPVAFSSSAATSS------STSTPTSSCSMTAADF 137
Query: 263 GHRHSTVCPGSRTCEGTGGAGGGLVGGTVGSRSGMASSRCP 303
G G GG G GG G+ +G +S CP
Sbjct: 138 G--------GGAAAGAVGGPGSRSAGGAGGTGTGSGASCCP 170
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.138 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,238,234
Number of Sequences: 37866
Number of extensions: 863616
Number of successful extensions: 4001
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 3894
Number of HSP's gapped (non-prelim): 146
length of query: 320
length of database: 18,247,518
effective HSP length: 102
effective length of query: 218
effective length of database: 14,385,186
effective search space: 3135970548
effective search space used: 3135970548
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.