Guide to the Human Genome
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Name: LOC100291907 Sequence: fasta or formatted (247aa) NCBI GI: 239752675
Description:

PREDICTED: hypothetical protein XP_002345422

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.8         34           3
 C cysteine            3.6          9           1
 D aspartate           0.0          0           0
 E glutamate           3.6          9           1
 F phenylalanine       2.4          6           1
 G glycine            15.0         37           2
 H histidine           1.6          4           1
 I isoleucine          0.8          2           1
 K lysine              2.4          6           1
 L leucine            11.3         28           2
 M methionine          2.0          5           1
 N asparagine          0.4          1           1
 P proline             6.9         17           2
 Q glutamine           1.6          4           1
 R arginine           12.6         31           2
 S serine             13.0         32           2
 T threonine           2.8          7           1
 V valine              2.4          6           1
 W tryptophan          3.2          8           2
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002345422 
LOC100290545          0.994   PREDICTED: hypothetical protein XP_002346940 
LOC100288479          0.994   PREDICTED: hypothetical protein XP_002342065 
LOC100133885          0.025   PREDICTED: hypothetical protein 
MNX1                  0.021   homeo box HB9 
LOC100292296          0.021   PREDICTED: hypothetical protein 
LOC100290476          0.021   PREDICTED: hypothetical protein XP_002347412 
LOC727804             0.021   PREDICTED: hypothetical protein 
ARHGAP6               0.021   Rho GTPase activating protein 6 isoform 3 
ARHGAP6               0.021   Rho GTPase activating protein 6 isoform 1 
LOC100292568          0.019   PREDICTED: hypothetical protein 
LOC100291146          0.019   PREDICTED: hypothetical protein XP_002346600 
ANKRD36               0.019   PREDICTED: ankyrin repeat domain 36 
LOC100287104          0.019   PREDICTED: hypothetical protein XP_002343630 
LOC100289534          0.019   PREDICTED: hypothetical protein XP_002342442 
LOC100129036          0.019   PREDICTED: hypothetical protein 
SFPQ                  0.019   splicing factor proline/glutamine rich (polypyrimidin...
LOC100292292          0.017   PREDICTED: hypothetical protein 
LOC100293776          0.017   PREDICTED: hypothetical protein 
LOC100291384          0.017   PREDICTED: hypothetical protein XP_002347156 
LOC729983             0.017   PREDICTED: hypothetical protein 
LOC100287578          0.017   PREDICTED: hypothetical protein XP_002343004 
LOC729983             0.017   PREDICTED: hypothetical protein 
RPH3A                 0.017   rabphilin 3A homolog isoform 1 
RPH3A                 0.017   rabphilin 3A homolog isoform 2 
LOC100293985          0.017   PREDICTED: hypothetical protein 
LOC100289986          0.017   PREDICTED: hypothetical protein XP_002346657 
LOC100128979          0.017   PREDICTED: hypothetical protein 
LOC100288009          0.017   PREDICTED: hypothetical protein XP_002342502 
KRT16                 0.017   keratin 16 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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