Guide to the Human Genome
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Name: SPATA12 Sequence: fasta or formatted (190aa) NCBI GI: 32171194
Description:

spermatogenesis associated 12

Referenced in:

Testes and Sperm

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         12           2
 C cysteine            4.7          9           1
 D aspartate           4.2          8           1
 E glutamate           5.3         10           1
 F phenylalanine       2.1          4           1
 G glycine             7.9         15           1
 H histidine           3.2          6           1
 I isoleucine          3.7          7           1
 K lysine              1.6          3           1
 L leucine            11.1         21           2
 M methionine          1.6          3           1
 N asparagine          3.2          6           1
 P proline             6.8         13           2
 Q glutamine           6.3         12           2
 R arginine            4.2          8           1
 S serine             13.2         25           3
 T threonine           7.9         15           2
 V valine              3.7          7           1
 W tryptophan          2.1          4           1
 Y tyrosine            1.1          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   spermatogenesis associated 12 
KIAA1949              0.019   phostensin 
KIAA1949              0.019   phostensin 
LOC100293126          0.016   PREDICTED: hypothetical protein 
OBSCN                 0.016   obscurin, cytoskeletal calmodulin and titin-interac...
NR1H2                 0.008   nuclear receptor subfamily 1, group H, member 2 [Hom...
DCT                   0.008   dopachrome tautomerase isoform 2 
DCT                   0.008   dopachrome tautomerase isoform 1 
TACC2                 0.008   transforming, acidic coiled-coil containing protein...
IL6R                  0.008   interleukin 6 receptor isoform 1 precursor 
MAGEA10               0.008   melanoma antigen family A, 10 
MAGEA10               0.008   melanoma antigen family A, 10 
CRTC3                 0.008   transducer of regulated CREB protein 3 isoform b [H...
CRTC3                 0.008   transducer of regulated CREB protein 3 isoform a [H...
ZNF653                0.008   zinc finger protein 653 
DST                   0.005   dystonin isoform 4 
DST                   0.005   dystonin isoform 3 
DST                   0.005   dystonin isoform 2 
DST                   0.005   dystonin isoform 1 
DST                   0.005   dystonin isoform 1eA precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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