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Search of human proteins with 239754700
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239754700 PREDICTED: hypothetical protein XP_002346069 [Homo
sapiens]
(91 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754700 PREDICTED: hypothetical protein XP_002346069 [Homo ... 192 4e-50
gi|13994190 frizzled 8 [Homo sapiens] 35 0.017
gi|209977082 REST corepressor 3 isoform b [Homo sapiens] 34 0.022
gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens] 33 0.065
gi|197276670 spermatogenesis and centriole associated 1 isoform ... 32 0.085
gi|197276668 spermatogenesis and centriole associated 1 isoform ... 32 0.085
gi|15826862 coiled-coil domain containing 120 isoform 3 [Homo sa... 32 0.14
gi|254039614 coiled-coil domain containing 120 isoform 4 [Homo s... 32 0.14
gi|254039612 coiled-coil domain containing 120 isoform 2 [Homo s... 32 0.14
gi|254039610 coiled-coil domain containing 120 isoform 1 [Homo s... 32 0.14
gi|28875799 cholecystokinin B receptor [Homo sapiens] 32 0.14
gi|71043876 undifferentiated embryonic cell transcription factor... 32 0.14
gi|56711322 ring finger protein 43 [Homo sapiens] 32 0.14
gi|46852172 kinesin family member 13B [Homo sapiens] 32 0.14
gi|169214883 PREDICTED: similar to hCG1821260 [Homo sapiens] 31 0.19
gi|4503519 eukaryotic translation initiation factor 3, subunit 5... 31 0.19
gi|33667044 ABI gene family, member 3 (NESH) binding protein [Ho... 31 0.19
gi|63055059 SH3 and PX domains 2B [Homo sapiens] 31 0.19
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 31 0.19
gi|224994221 SH3-domain binding protein 2 isoform b [Homo sapiens] 31 0.25
gi|224994219 SH3-domain binding protein 2 isoform c [Homo sapiens] 31 0.25
gi|239743293 PREDICTED: mucin 12 [Homo sapiens] 31 0.25
gi|170014705 SH3-domain binding protein 2 isoform a [Homo sapiens] 31 0.25
gi|170014703 SH3-domain binding protein 2 isoform a [Homo sapiens] 31 0.25
gi|195539372 ADAM metallopeptidase with thrombospondin type 1 mo... 31 0.25
gi|189011568 adenomatous polyposis coli [Homo sapiens] 30 0.32
gi|189011566 adenomatous polyposis coli [Homo sapiens] 30 0.32
gi|53759122 adenomatous polyposis coli [Homo sapiens] 30 0.32
gi|222418647 mucin 7, secreted precursor [Homo sapiens] 30 0.32
gi|116284392 mucin 2 precursor [Homo sapiens] 30 0.32
>gi|239754700 PREDICTED: hypothetical protein XP_002346069 [Homo
sapiens]
Length = 91
Score = 192 bits (489), Expect = 4e-50
Identities = 91/91 (100%), Positives = 91/91 (100%)
Query: 1 MESYALVSKTLGHASHSAHCKHLSASTNPALTCDVHTRDTRTPLCARPPRSLSAPPRTGD 60
MESYALVSKTLGHASHSAHCKHLSASTNPALTCDVHTRDTRTPLCARPPRSLSAPPRTGD
Sbjct: 1 MESYALVSKTLGHASHSAHCKHLSASTNPALTCDVHTRDTRTPLCARPPRSLSAPPRTGD 60
Query: 61 PPTAATADTGPGSTHPLPKQQRAASSPGTEE 91
PPTAATADTGPGSTHPLPKQQRAASSPGTEE
Sbjct: 61 PPTAATADTGPGSTHPLPKQQRAASSPGTEE 91
>gi|13994190 frizzled 8 [Homo sapiens]
Length = 694
Score = 34.7 bits (78), Expect = 0.017
Identities = 18/57 (31%), Positives = 22/57 (38%)
Query: 20 CKHLSASTNPALTCDVHTRDTRTPLCARPPRSLSAPPRTGDPPTAATADTGPGSTHP 76
C L NP C + R T PPR L PP PP+ + PG+ P
Sbjct: 135 CDRLPEQGNPDTLCMDYNRTDLTTAAPSPPRRLPPPPPGEQPPSGSGHGRPPGARPP 191
>gi|209977082 REST corepressor 3 isoform b [Homo sapiens]
Length = 436
Score = 34.3 bits (77), Expect = 0.022
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 24 SASTNPALTCDVHTRDTRTPLCARPPRSLSAPPRTGDPP---TAATADTGPGSTHPLPKQ 80
S+ T +C + +T +P C P S ++ T P AA++ GS HP P
Sbjct: 365 SSDTGSITSCPIIHSNTNSPYCHSEPASTTSSSNTACCPGSSPAASSTPAAGSVHPAPAN 424
Query: 81 QRAASS 86
++AS+
Sbjct: 425 FKSAST 430
>gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens]
Length = 2303
Score = 32.7 bits (73), Expect = 0.065
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 6/48 (12%)
Query: 46 ARPPRSLSAPPRTGDPPTAATADTGPGSTHPLPKQ-----QRAASSPG 88
++PPRS + P R P+++++ T P S PLP++ Q A + PG
Sbjct: 1856 SQPPRSATPPARLAKTPSSSSSQTSPAS-QPLPRKRPPVTQAAGALPG 1902
Score = 25.8 bits (55), Expect = 7.9
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 29 PALTCDVHTRDTRTPLCARPPRSLSAPPRTGDPPTAATADTGPGSTHPLPKQQRAASSPG 88
PA T ++ T ++ P A PP L+ P + T+ + P P+ + A PG
Sbjct: 1846 PAKTSELATL-SQPPRSATPPARLAKTPSSSSSQTSPASQPLPRKRPPVTQAAGALPGPG 1904
>gi|197276670 spermatogenesis and centriole associated 1 isoform 2
[Homo sapiens]
Length = 441
Score = 32.3 bits (72), Expect = 0.085
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 37 TRDTRTPLCARPPRSLSAPPRTGDPPTAATADTGPGSTHPLPK 79
T++ P C PP + +PPRT P + GP +T P K
Sbjct: 373 TQNLPVPHC--PPHNAHSPPRTSSSPASVNDSRGPRTTEPSTK 413
>gi|197276668 spermatogenesis and centriole associated 1 isoform 1
[Homo sapiens]
Length = 591
Score = 32.3 bits (72), Expect = 0.085
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 37 TRDTRTPLCARPPRSLSAPPRTGDPPTAATADTGPGSTHPLPK 79
T++ P C PP + +PPRT P + GP +T P K
Sbjct: 373 TQNLPVPHC--PPHNAHSPPRTSSSPASVNDSRGPRTTEPSTK 413
>gi|15826862 coiled-coil domain containing 120 isoform 3 [Homo
sapiens]
Length = 630
Score = 31.6 bits (70), Expect = 0.14
Identities = 21/56 (37%), Positives = 23/56 (41%), Gaps = 6/56 (10%)
Query: 26 STNPAL-TCDVHTRDTRTPLCARPPRSLSAP-----PRTGDPPTAATADTGPGSTH 75
S +P L T D HTR TRT C PP + P P PP G S H
Sbjct: 496 SNSPLLRTKDPHTRATRTKPCGLPPEAAEGPEVHPNPLLWMPPPTRIPSAGERSGH 551
>gi|254039614 coiled-coil domain containing 120 isoform 4 [Homo
sapiens]
Length = 618
Score = 31.6 bits (70), Expect = 0.14
Identities = 21/56 (37%), Positives = 23/56 (41%), Gaps = 6/56 (10%)
Query: 26 STNPAL-TCDVHTRDTRTPLCARPPRSLSAP-----PRTGDPPTAATADTGPGSTH 75
S +P L T D HTR TRT C PP + P P PP G S H
Sbjct: 484 SNSPLLRTKDPHTRATRTKPCGLPPEAAEGPEVHPNPLLWMPPPTRIPSAGERSGH 539
>gi|254039612 coiled-coil domain containing 120 isoform 2 [Homo
sapiens]
Length = 649
Score = 31.6 bits (70), Expect = 0.14
Identities = 21/56 (37%), Positives = 23/56 (41%), Gaps = 6/56 (10%)
Query: 26 STNPAL-TCDVHTRDTRTPLCARPPRSLSAP-----PRTGDPPTAATADTGPGSTH 75
S +P L T D HTR TRT C PP + P P PP G S H
Sbjct: 484 SNSPLLRTKDPHTRATRTKPCGLPPEAAEGPEVHPNPLLWMPPPTRIPSAGERSGH 539
>gi|254039610 coiled-coil domain containing 120 isoform 1 [Homo
sapiens]
Length = 661
Score = 31.6 bits (70), Expect = 0.14
Identities = 21/56 (37%), Positives = 23/56 (41%), Gaps = 6/56 (10%)
Query: 26 STNPAL-TCDVHTRDTRTPLCARPPRSLSAP-----PRTGDPPTAATADTGPGSTH 75
S +P L T D HTR TRT C PP + P P PP G S H
Sbjct: 496 SNSPLLRTKDPHTRATRTKPCGLPPEAAEGPEVHPNPLLWMPPPTRIPSAGERSGH 551
>gi|28875799 cholecystokinin B receptor [Homo sapiens]
Length = 447
Score = 31.6 bits (70), Expect = 0.14
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Query: 22 HLSASTNPALTCDVHTR------DTRTPLCARPPRSLSAPPRTGDPPTAATA 67
+ SA NP + C +H R +T C RPPR+ DPPT + A
Sbjct: 380 YASACVNPLVYCFMHRRFRQACLETCARCCPRPPRARPRALPDEDPPTPSIA 431
>gi|71043876 undifferentiated embryonic cell transcription factor 1
[Homo sapiens]
Length = 341
Score = 31.6 bits (70), Expect = 0.14
Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 12/56 (21%)
Query: 48 PPRSLSAPPRTGDPPTAATAD------------TGPGSTHPLPKQQRAASSPGTEE 91
PP+S A P G PP A GPGS P P ++ S PG E
Sbjct: 208 PPKSADASPAPGSPPAPAPTALATCIPEDRAPVRGPGSPPPPPAREDPDSPPGRPE 263
>gi|56711322 ring finger protein 43 [Homo sapiens]
Length = 783
Score = 31.6 bits (70), Expect = 0.14
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 44 LCARPPRSLSAPPRTGDPPTAATADTGPGSTHPLPKQQRAASSPGTEE 91
LC P + L P G+ P+ ++DT G P P Q ++ PG+EE
Sbjct: 727 LCLTPRQPLEPHP-PGEGPSEWSSDTAEGRPCPYPHCQVLSAQPGSEE 773
>gi|46852172 kinesin family member 13B [Homo sapiens]
Length = 1826
Score = 31.6 bits (70), Expect = 0.14
Identities = 27/79 (34%), Positives = 32/79 (40%), Gaps = 12/79 (15%)
Query: 12 GHASHSAHCKHLSASTNPALTCDVHTRDTRTPLCARPPRSLSAPPRTGDPPTAATADTGP 71
G+ SHS LS + P L T A P +S PP PPTA A+ P
Sbjct: 1567 GYFSHSVSTATLSDALGPGLDAAAPPGSMPTAPEAEPEAPISHPP----PPTAVPAEEPP 1622
Query: 72 GSTHPLPKQQRAASSPGTE 90
G P+Q SPG E
Sbjct: 1623 G-----PQQ---LVSPGRE 1633
>gi|169214883 PREDICTED: similar to hCG1821260 [Homo sapiens]
Length = 526
Score = 31.2 bits (69), Expect = 0.19
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 4 YALVSKTLGHASHSAHCKHLSASTNPALTCDVHTRDTRTPLCARPPRSLSAPPR 57
YA H C H T P+LT +H+RDTR +PP SL PR
Sbjct: 63 YAKQDALFDHPFMGHQCVHCDTET-PSLT--IHSRDTRKHGDLQPPHSLKQLPR 113
>gi|4503519 eukaryotic translation initiation factor 3, subunit 5
epsilon, 47kDa [Homo sapiens]
Length = 357
Score = 31.2 bits (69), Expect = 0.19
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 42 TPLCARPPRSLSAPPRTGDPPTAATADTGPGST---HPLPKQQRAASSPG 88
TP A P +AP + DP AA A PG T P Q A + PG
Sbjct: 30 TPAPAAAPVPAAAPASSSDPAAAAAATAAPGQTPASAQAPAQTPAPALPG 79
>gi|33667044 ABI gene family, member 3 (NESH) binding protein [Homo
sapiens]
Length = 1075
Score = 31.2 bits (69), Expect = 0.19
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 41 RTPLCARP--PRSLSAPPR--TGDPPTAATADTGPGSTHPLPKQQRAASSP 87
R PL RP PR PP TG P +A +GP +T PL R +P
Sbjct: 706 RPPLPPRPTHPRRKPLPPNNVTGKPGSAGIISSGPITTPPLRSTPRPTGTP 756
>gi|63055059 SH3 and PX domains 2B [Homo sapiens]
Length = 911
Score = 31.2 bits (69), Expect = 0.19
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 14/73 (19%)
Query: 25 ASTNPALTCDVHTRDTRTPLCARPPRSLSAPPRTGDPPTAATADTGPGSTHPLPK----- 79
A PA T D ++ PL P + PPR PP ++ S+ PLP+
Sbjct: 728 APPRPAKTTDPVSKSVPVPLQEAPQQRPVVPPRRPPPPKKTSS-----SSRPLPEVRGPQ 782
Query: 80 ----QQRAASSPG 88
+ RAA +PG
Sbjct: 783 CEGHESRAAPTPG 795
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 31.2 bits (69), Expect = 0.19
Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 12/89 (13%)
Query: 8 SKTLGHASHSAHCK--------HLSASTNPALTCDVHTRDTRTPLCARPPRSLSAPPRTG 59
+K HAS A + + S++PA T TR TR P PP S ++ PRT
Sbjct: 462 AKITSHASKPASARTSTHKPPPFTALSSSPAPTPG-STRSTRPPATMVPPTSGTSTPRTA 520
Query: 60 DP-PTAATADTGPGSTHPLPKQQRAASSP 87
PT +A T GS P+ + + P
Sbjct: 521 PAVPTPGSAPT--GSKKPIGSEASKKAGP 547
>gi|224994221 SH3-domain binding protein 2 isoform b [Homo sapiens]
Length = 618
Score = 30.8 bits (68), Expect = 0.25
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 41 RTPLCARP----PRSLSAPPRTGDPPTAATADTGPGSTHPLPKQQRAASSP 87
R PLC R PR + P R DPP + T T PG P ++ A+ SP
Sbjct: 313 RDPLCPRRAEPCPRVPATPRRMSDPPLS-TMPTAPGLRKPPCFRESASPSP 362
>gi|224994219 SH3-domain binding protein 2 isoform c [Homo sapiens]
Length = 589
Score = 30.8 bits (68), Expect = 0.25
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 41 RTPLCARP----PRSLSAPPRTGDPPTAATADTGPGSTHPLPKQQRAASSP 87
R PLC R PR + P R DPP + T T PG P ++ A+ SP
Sbjct: 284 RDPLCPRRAEPCPRVPATPRRMSDPPLS-TMPTAPGLRKPPCFRESASPSP 333
>gi|239743293 PREDICTED: mucin 12 [Homo sapiens]
Length = 5478
Score = 30.8 bits (68), Expect = 0.25
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 6/91 (6%)
Query: 3 SYALVSKTLGHASHSAHCKHLSASTNPALTCDVHTR---DTRTPLCARPPRSLSAPPRTG 59
S+ S T + S H ST + + TR T +P P S ++P G
Sbjct: 2630 SFGQESTTFHSSPGSTHTTLFPDSTTSSGIVEASTRVHSSTGSPRTTLSPASSTSPGLQG 2689
Query: 60 DPPTAATADTGPGSTHPLPKQQRAASSPGTE 90
+ + T T P STH P A++P E
Sbjct: 2690 E---STTFQTHPASTHTTPSPPSTATAPVEE 2717
Score = 28.9 bits (63), Expect = 0.94
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 6/91 (6%)
Query: 3 SYALVSKTLGHASHSAHCKHLSASTNPALTCDVHTR---DTRTPLCARPPRSLSAPPRTG 59
S+ S T + S H ST + + TR T +P P S ++P G
Sbjct: 2156 SFGQESTTFHSSPGSTHTTLFPDSTTSSGIVEASTRVHSSTGSPRTTLSPASSTSPGLQG 2215
Query: 60 DPPTAATADTGPGSTHPLPKQQRAASSPGTE 90
+ + T P STH P A++P E
Sbjct: 2216 E---STAFQTHPASTHTTPSPPSTATAPVEE 2243
Score = 28.9 bits (63), Expect = 0.94
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 6/91 (6%)
Query: 3 SYALVSKTLGHASHSAHCKHLSASTNPALTCDVHTR---DTRTPLCARPPRSLSAPPRTG 59
S+ S T + S H ST + + TR T +P P S ++P G
Sbjct: 3713 SFGQESTTFHSSPGSTHTTLFPDSTTSSGIVEASTRVHSSTGSPRTTLSPASSTSPGLQG 3772
Query: 60 DPPTAATADTGPGSTHPLPKQQRAASSPGTE 90
+ + T P STH P A++P E
Sbjct: 3773 E---STAFQTHPASTHTTPSPPSTATAPVEE 3800
Score = 27.7 bits (60), Expect = 2.1
Identities = 24/91 (26%), Positives = 34/91 (37%), Gaps = 6/91 (6%)
Query: 3 SYALVSKTLGHASHSAHCKHLSASTNPALTCDVHTR---DTRTPLCARPPRSLSAPPRTG 59
S+ S T S H ST + + TR T +P P S ++P G
Sbjct: 1073 SFGQESTTFHSNPGSTHTTLFPDSTTSSGIVEASTRVHSSTGSPRTTLSPASSTSPGLQG 1132
Query: 60 DPPTAATADTGPGSTHPLPKQQRAASSPGTE 90
+ + T P STH P A++P E
Sbjct: 1133 E---STAFQTHPASTHTTPSPPSTATAPVEE 1160
>gi|170014705 SH3-domain binding protein 2 isoform a [Homo sapiens]
Length = 561
Score = 30.8 bits (68), Expect = 0.25
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 41 RTPLCARP----PRSLSAPPRTGDPPTAATADTGPGSTHPLPKQQRAASSP 87
R PLC R PR + P R DPP + T T PG P ++ A+ SP
Sbjct: 256 RDPLCPRRAEPCPRVPATPRRMSDPPLS-TMPTAPGLRKPPCFRESASPSP 305
>gi|170014703 SH3-domain binding protein 2 isoform a [Homo sapiens]
Length = 561
Score = 30.8 bits (68), Expect = 0.25
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 41 RTPLCARP----PRSLSAPPRTGDPPTAATADTGPGSTHPLPKQQRAASSP 87
R PLC R PR + P R DPP + T T PG P ++ A+ SP
Sbjct: 256 RDPLCPRRAEPCPRVPATPRRMSDPPLS-TMPTAPGLRKPPCFRESASPSP 305
>gi|195539372 ADAM metallopeptidase with thrombospondin type 1
motif, 5 preproprotein [Homo sapiens]
Length = 930
Score = 30.8 bits (68), Expect = 0.25
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 14/57 (24%)
Query: 41 RTPLCARPPRSLSAPPRTGDPPTAATA--------------DTGPGSTHPLPKQQRA 83
R PL A P + A + G PPTAA A PG HPL +++R+
Sbjct: 14 RLPLAAVGPAATPAQDKAGQPPTAAAAAQPRRRQGEEVQERAEPPGHPHPLAQRRRS 70
>gi|189011568 adenomatous polyposis coli [Homo sapiens]
Length = 2843
Score = 30.4 bits (67), Expect = 0.32
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 48 PPRSLSAPPRTGDPPTAATADTGPG 72
PP LS PRT P TA+T +G G
Sbjct: 2338 PPNKLSQLPRTSSPSTASTKSSGSG 2362
>gi|189011566 adenomatous polyposis coli [Homo sapiens]
Length = 2843
Score = 30.4 bits (67), Expect = 0.32
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 48 PPRSLSAPPRTGDPPTAATADTGPG 72
PP LS PRT P TA+T +G G
Sbjct: 2338 PPNKLSQLPRTSSPSTASTKSSGSG 2362
>gi|53759122 adenomatous polyposis coli [Homo sapiens]
Length = 2843
Score = 30.4 bits (67), Expect = 0.32
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 48 PPRSLSAPPRTGDPPTAATADTGPG 72
PP LS PRT P TA+T +G G
Sbjct: 2338 PPNKLSQLPRTSSPSTASTKSSGSG 2362
>gi|222418647 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 30.4 bits (67), Expect = 0.32
Identities = 18/60 (30%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 24 SASTNPALTCDVHTRDTRTPLCARPPRSLSAPPRTGDPPTAATADTGPGSTHPLPKQQRA 83
SA+T + T P PP + APP + PP A P +T P P A
Sbjct: 196 SATTQAPPSSSAPPETTAAP--PTPPATTPAPPSSSAPPETTAAPPTPSATTPAPLSSSA 253
Score = 29.6 bits (65), Expect = 0.55
Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 5/65 (7%)
Query: 24 SASTNPALTCDVHTRDTRTPLCARPPRSLSAPPR-TGDPPTAATADTGPGSTHPLPKQQR 82
S+S P T T TP P S SAPP T PPT + P S P+
Sbjct: 227 SSSAPPETTAAPPTPSATTPA----PLSSSAPPETTAVPPTPSATTLDPSSASAPPETTA 282
Query: 83 AASSP 87
A +P
Sbjct: 283 APPTP 287
Score = 29.6 bits (65), Expect = 0.55
Identities = 25/73 (34%), Positives = 30/73 (41%), Gaps = 10/73 (13%)
Query: 23 LSASTNPALTCDVHTRDTRTPLCARPPRSLSAPPRTGDPPTAATADTGPGSTHPLPKQQR 82
LS+S P T T T P S SAPP T P +A T + P P++
Sbjct: 249 LSSSAPPETTAVPPTPSATT----LDPSSASAPPETTAAPPTPSATTPAPPSSPAPQETT 304
Query: 83 AA------SSPGT 89
AA SSP T
Sbjct: 305 AAPITTPNSSPTT 317
Score = 28.9 bits (63), Expect = 0.94
Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Query: 24 SASTNPALTCDVHTRDTRTPLCARPPRSLSAPPRTGDPPTAATADTGPGSTHPLPKQQRA 83
S+S P T T TP PP S + P T PPT + P S+ P+
Sbjct: 204 SSSAPPETTAAPPTPPATTPA---PPSSSAPPETTAAPPTPSATTPAPLSSSAPPETTAV 260
Query: 84 ASSP 87
+P
Sbjct: 261 PPTP 264
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 42 TPLCARP-PRSLSAPPRT-GDPPTAATADTGPGSTHPLPKQQRAASSP 87
TP P P S SAPP T PPT + P S+ P+ A +P
Sbjct: 171 TPSATTPAPPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPPTP 218
Score = 27.7 bits (60), Expect = 2.1
Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Query: 24 SASTNPALTCDVHTRDTRTPLCARPPRSLSAPPRTGDPPTAATADTGPGSTHPLPKQQRA 83
S+S P T T T PP S + P T PPT P S+ P+ A
Sbjct: 181 SSSAPPETTAAPPTPSATTQA---PPSSSAPPETTAAPPTPPATTPAPPSSSAPPETTAA 237
Query: 84 ASSP 87
+P
Sbjct: 238 PPTP 241
>gi|116284392 mucin 2 precursor [Homo sapiens]
Length = 5179
Score = 30.4 bits (67), Expect = 0.32
Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Query: 24 SASTNPALTCDVHTRDTRTPLCARPPRSLSAPPRTGDPPTAATADTGPGSTHPLPKQQRA 83
+ + +P ++ T TP PP + +PP T P T T P +T P P
Sbjct: 1451 TTTPSPPISTTTTPPPTTTP---SPPTTTPSPPTTTPSPPTTTTTTPPPTTTPSPPTTTP 1507
Query: 84 ASSPGT 89
+ P +
Sbjct: 1508 ITPPAS 1513
Score = 28.9 bits (63), Expect = 0.94
Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
Query: 29 PALTCDVHTRDTRTPLCARPPRSLSAPPRTG--DPPTAATADTGPGSTHPLPKQQRAASS 86
P T T T TP PP + +PP T PPT+ T T P +T P P +
Sbjct: 1519 PTTTPSPPTTTTTTP----PPTTTPSPPTTTPITPPTSTT--TLPPTTTPSPPPTTTTTP 1572
Query: 87 PGT 89
P T
Sbjct: 1573 PPT 1575
Score = 28.9 bits (63), Expect = 0.94
Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
Query: 29 PALTCDVHTRDTRTPLCARPPRSLSAPPRTG--DPPTAATADTGPGSTHPLPKQQRAASS 86
P T T T TP PP + +PP T PPT+ T T P +T P P +
Sbjct: 1598 PTTTPSPPTTTTTTP----PPTTTPSPPTTTPITPPTSTT--TLPPTTTPSPPPTTTTTP 1651
Query: 87 PGT 89
P T
Sbjct: 1652 PPT 1654
Score = 28.5 bits (62), Expect = 1.2
Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 4/61 (6%)
Query: 29 PALTCDVHTRDTRTPLCARPPRSLSAPPRTGDPPTAATADTGPGSTHPLPKQQRAASSPG 88
P T T T TP PP + +PP T A+ T P +T P P + P
Sbjct: 1480 PTTTPSPPTTTTTTP----PPTTTPSPPTTTPITPPASTTTLPPTTTPSPPTTTTTTPPP 1535
Query: 89 T 89
T
Sbjct: 1536 T 1536
Score = 28.5 bits (62), Expect = 1.2
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 40 TRTPLCARPPRSLSAPPRTGDPPTAATADTGPGSTHPLPKQQRAASSPGT 89
T TP+ P + + PP T P T T P +T P P S P T
Sbjct: 1622 TTTPITP-PTSTTTLPPTTTPSPPPTTTTTPPPTTTPSPPTTTTPSPPIT 1670
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 40 TRTPLCARPPRSLSAPPRTGDPPTAATADTGPGSTHPLPKQQRAASSP 87
T TP+ P + + PP T P T T P +T P P S P
Sbjct: 1543 TTTPITP-PTSTTTLPPTTTPSPPPTTTTTPPPTTTPSPPTTTTPSPP 1589
Score = 26.9 bits (58), Expect = 3.6
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 40 TRTPLCARPPRSLS-APPRTGDPPTAATADTGPGSTHPLPKQQRAASSPGT 89
T TP + PP S + PP T P T T P +T P P + P T
Sbjct: 1403 TTTP--SPPPTSTTTLPPTTTPSPPTTTTTTPPPTTTPSPPITTTTTPPPT 1451
Score = 26.9 bits (58), Expect = 3.6
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 40 TRTPLCARPPRSLSAPPRTGDPPTAATADTGPGSTHPLPKQQRAASSP 87
T TP+ P + + PP T P T T P +T P P + P
Sbjct: 1504 TTTPITP-PASTTTLPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPP 1550
Score = 26.6 bits (57), Expect = 4.6
Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 3/67 (4%)
Query: 24 SASTNPALTCDVHTRDTRTPLCARPPRSLSAPPRTGDP-PTAATADTGPGSTHPLPKQQR 82
+ + +P T T TP + P + + PP T P P T T P +T P P
Sbjct: 1403 TTTPSPPPTSTTTLPPTTTP--SPPTTTTTTPPPTTTPSPPITTTTTPPPTTTPSPPIST 1460
Query: 83 AASSPGT 89
+ P T
Sbjct: 1461 TTTPPPT 1467
Score = 26.6 bits (57), Expect = 4.6
Identities = 20/72 (27%), Positives = 26/72 (36%), Gaps = 13/72 (18%)
Query: 27 TNPALTCDVHTRDTRTPLCARPPRSLSAPPRTGDP---------PTAATADTGPGSTHPL 77
T P T + T +P PP + + PP T P P T T P +T P
Sbjct: 1548 TPPTSTTTLPPTTTPSP----PPTTTTTPPPTTTPSPPTTTTPSPPTITTTTPPPTTTPS 1603
Query: 78 PKQQRAASSPGT 89
P + P T
Sbjct: 1604 PPTTTTTTPPPT 1615
Score = 26.6 bits (57), Expect = 4.6
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 8/63 (12%)
Query: 24 SASTNPALTCDVHTRDTRTPLCARPPRSLS--APPRTGDPPTAA------TADTGPGSTH 75
S +T P+ T + T + PP +++ +P T PPT T + P +T
Sbjct: 1700 SPTTTPSSPITTTTTPSSTTTPSPPPTTMTTPSPTTTPSPPTTTMTTLPPTTTSSPLTTT 1759
Query: 76 PLP 78
PLP
Sbjct: 1760 PLP 1762
Score = 26.2 bits (56), Expect = 6.1
Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 5/66 (7%)
Query: 24 SASTNPALTCDVHTRDTRTPLCARPPR--SLSAPPRTGDPPTAATADTGPGSTHPLPKQQ 81
+ +T P T T TP PP + + PP T P T T P +T P P
Sbjct: 1567 TTTTTPPPTTTPSPPTTTTP---SPPTITTTTPPPTTTPSPPTTTTTTPPPTTTPSPPTT 1623
Query: 82 RAASSP 87
+ P
Sbjct: 1624 TPITPP 1629
Score = 26.2 bits (56), Expect = 6.1
Identities = 20/62 (32%), Positives = 23/62 (37%), Gaps = 5/62 (8%)
Query: 29 PALTCDVHTRDTRTPLCARPPRSLSAPPRTGDP-PTAATADTGPGSTHPLPKQQRAASSP 87
P T T TP PP + +PP T P P T T P +T P S P
Sbjct: 1637 PTTTPSPPPTTTTTP----PPTTTPSPPTTTTPSPPITTTTTPPPTTTPSSPITTTPSPP 1692
Query: 88 GT 89
T
Sbjct: 1693 TT 1694
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.309 0.122 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,126,250
Number of Sequences: 37866
Number of extensions: 278005
Number of successful extensions: 2223
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 150
Number of HSP's that attempted gapping in prelim test: 1831
Number of HSP's gapped (non-prelim): 490
length of query: 91
length of database: 18,247,518
effective HSP length: 62
effective length of query: 29
effective length of database: 15,899,826
effective search space: 461094954
effective search space used: 461094954
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.