Guide to the Human Genome
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Name: SH3PXD2B Sequence: fasta or formatted (911aa) NCBI GI: 63055059
Description:

SH3 and PX domains 2B

Referenced in:

Superoxide Pathway

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         51           4
 C cysteine            0.9          8           1
 D aspartate           5.6         51           2
 E glutamate           8.2         75           4
 F phenylalanine       2.5         23           2
 G glycine             7.6         69           2
 H histidine           1.0          9           1
 I isoleucine          4.2         38           2
 K lysine              8.1         74           3
 L leucine             6.9         63           2
 M methionine          1.5         14           2
 N asparagine          2.5         23           2
 P proline            11.7        107           4
 Q glutamine           5.4         49           2
 R arginine            6.8         62           2
 S serine              8.0         73           4
 T threonine           3.4         31           2
 V valine              5.9         54           3
 W tryptophan          1.9         17           2
 Y tyrosine            2.2         20           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SH3 and PX domains 2B 
SH3PXD2A              0.272   SH3 multiple domains 1 
NCF1                  0.098   neutrophil cytosolic factor 1 
NOXO1                 0.033   NADPH oxidase organizer 1 isoform b 
NOXO1                 0.032   NADPH oxidase organizer 1 isoform c 
NOXO1                 0.030   NADPH oxidase organizer 1 isoform a 
ITSN2                 0.023   intersectin 2 isoform 3 
ITSN2                 0.023   intersectin 2 isoform 1 
ITSN2                 0.023   intersectin 2 isoform 2 
NCF4                  0.023   neutrophil cytosolic factor 4 isoform 1 
NCF4                  0.023   neutrophil cytosolic factor 4 isoform 2 
NCK1                  0.023   NCK adaptor protein 1 
PIK3C2A               0.022   phosphoinositide-3-kinase, class 2 alpha polypeptid...
C1orf113              0.022   SH3 domain-containing protein C1orf113 isoform 1 [H...
SH3KBP1               0.022   SH3-domain kinase binding protein 1 isoform a 
ITSN1                 0.021   intersectin 1 isoform ITSN-s 
ITSN1                 0.021   intersectin 1 isoform ITSN-l 
NCK2                  0.019   NCK adaptor protein 2 isoform A 
NCK2                  0.019   NCK adaptor protein 2 isoform A 
PSTPIP1               0.018   proline-serine-threonine phosphatase interacting pro...
MCF2L                 0.017   MCF.2 cell line derived transforming sequence-like ...
MCF2L                 0.017   MCF.2 cell line derived transforming sequence-like ...
PCLO                  0.017   piccolo isoform 2 
PCLO                  0.017   piccolo isoform 1 
SH3KBP1               0.017   SH3-domain kinase binding protein 1 isoform b 
KIAA1804              0.017   mixed lineage kinase 4 
CCNK                  0.016   cyclin K isoform 1 
RAPH1                 0.016   Ras association and pleckstrin homology domains 1 is...
MLL2                  0.016   myeloid/lymphoid or mixed-lineage leukemia 2 
SRRM1                 0.015   serine/arginine repetitive matrix 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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