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Search of human proteins with 239754614
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239754614 PREDICTED: hypothetical protein [Homo sapiens]
(490 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754614 PREDICTED: hypothetical protein [Homo sapiens] 1015 0.0
gi|239743215 PREDICTED: hypothetical protein [Homo sapiens] 663 0.0
gi|169215850 PREDICTED: transmembrane protein 46-like [Homo sapi... 39 0.008
gi|167614488 TBC1 domain family, member 10B [Homo sapiens] 38 0.018
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 37 0.031
gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e... 37 0.041
gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d... 37 0.041
gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a ... 37 0.041
gi|57164979 Treacher Collins-Franceschetti syndrome 1 isoform c ... 37 0.041
gi|239742763 PREDICTED: hypothetical protein [Homo sapiens] 36 0.091
gi|239740974 PREDICTED: hypothetical protein [Homo sapiens] 36 0.091
gi|239744254 PREDICTED: hypothetical protein [Homo sapiens] 35 0.12
gi|239508696 PREDICTED: hypothetical protein [Homo sapiens] 35 0.12
gi|239754909 PREDICTED: hypothetical protein [Homo sapiens] 35 0.15
gi|169211906 PREDICTED: hypothetical protein [Homo sapiens] 35 0.15
gi|169211049 PREDICTED: hypothetical protein [Homo sapiens] 35 0.15
gi|239757326 PREDICTED: hypothetical protein [Homo sapiens] 35 0.20
gi|239751833 PREDICTED: hypothetical protein [Homo sapiens] 35 0.20
gi|34335253 disks large-associated protein 4 isoform a [Homo sap... 35 0.20
gi|120953300 leucine-rich repeats and IQ motif containing 1 isof... 35 0.20
gi|120953243 leucine-rich repeats and IQ motif containing 1 isof... 35 0.20
gi|155029548 phosphofurin acidic cluster sorting protein 2 isofo... 34 0.26
gi|4759100 splicing factor, arginine/serine-rich 11 [Homo sapiens] 34 0.26
gi|221139764 PHD and ring finger domains 1 [Homo sapiens] 34 0.26
gi|163965366 nascent polypeptide-associated complex alpha subuni... 34 0.26
gi|224465238 hypothetical protein LOC283999 [Homo sapiens] 33 0.45
gi|24497554 homeobox A13 [Homo sapiens] 33 0.45
gi|239757964 PREDICTED: hypothetical protein [Homo sapiens] 33 0.45
gi|169213977 PREDICTED: hypothetical protein [Homo sapiens] 33 0.45
gi|239752303 PREDICTED: hypothetical protein XP_002348193 [Homo ... 33 0.45
>gi|239754614 PREDICTED: hypothetical protein [Homo sapiens]
Length = 490
Score = 1015 bits (2625), Expect = 0.0
Identities = 490/490 (100%), Positives = 490/490 (100%)
Query: 1 MSCPQSSAQPPPPISYEEEFTTTWTTTTCVTSRPAGSAQQRLDAAGAGAAHLLAGAWLVL 60
MSCPQSSAQPPPPISYEEEFTTTWTTTTCVTSRPAGSAQQRLDAAGAGAAHLLAGAWLVL
Sbjct: 1 MSCPQSSAQPPPPISYEEEFTTTWTTTTCVTSRPAGSAQQRLDAAGAGAAHLLAGAWLVL 60
Query: 61 STSCRPRAPLMLNASAACAPATLALGFRVFAAAITAPEEEKKATRHAESPEQARRGRDAL 120
STSCRPRAPLMLNASAACAPATLALGFRVFAAAITAPEEEKKATRHAESPEQARRGRDAL
Sbjct: 61 STSCRPRAPLMLNASAACAPATLALGFRVFAAAITAPEEEKKATRHAESPEQARRGRDAL 120
Query: 121 SGSSGKVGAPSPPLACPRRRYWATGCPAPAHWSAAARCLQSHPSPSGRDAMAHWSTLFLA 180
SGSSGKVGAPSPPLACPRRRYWATGCPAPAHWSAAARCLQSHPSPSGRDAMAHWSTLFLA
Sbjct: 121 SGSSGKVGAPSPPLACPRRRYWATGCPAPAHWSAAARCLQSHPSPSGRDAMAHWSTLFLA 180
Query: 181 VSASGFWRCCSVGPKFADPGSQDAGRAYAPRRTGRRVGLLLPLLARFAPQSPSLAAFTTF 240
VSASGFWRCCSVGPKFADPGSQDAGRAYAPRRTGRRVGLLLPLLARFAPQSPSLAAFTTF
Sbjct: 181 VSASGFWRCCSVGPKFADPGSQDAGRAYAPRRTGRRVGLLLPLLARFAPQSPSLAAFTTF 240
Query: 241 IGAFWTLCLTVLKGATGRGFPRKRTPHGAPLRLQALSPRRRRGQARGAPTLGRGQGVLPA 300
IGAFWTLCLTVLKGATGRGFPRKRTPHGAPLRLQALSPRRRRGQARGAPTLGRGQGVLPA
Sbjct: 241 IGAFWTLCLTVLKGATGRGFPRKRTPHGAPLRLQALSPRRRRGQARGAPTLGRGQGVLPA 300
Query: 301 RLCRAEIWCLQFTEALSELIRSHPAYQQISGECSVEALPVCTAHLPGNCSPERRSRPWPP 360
RLCRAEIWCLQFTEALSELIRSHPAYQQISGECSVEALPVCTAHLPGNCSPERRSRPWPP
Sbjct: 301 RLCRAEIWCLQFTEALSELIRSHPAYQQISGECSVEALPVCTAHLPGNCSPERRSRPWPP 360
Query: 361 AARKLQPQEPRRPRTQGTKEKGKEEGRKERKKEKVRKKTVDDRRRPQVTFQAVNLEREGA 420
AARKLQPQEPRRPRTQGTKEKGKEEGRKERKKEKVRKKTVDDRRRPQVTFQAVNLEREGA
Sbjct: 361 AARKLQPQEPRRPRTQGTKEKGKEEGRKERKKEKVRKKTVDDRRRPQVTFQAVNLEREGA 420
Query: 421 PGNCGVTAPPGGHIWLKQVEVQTHLENRCHRLKATVTTTTRPGAEPRSPPFIRTCGEIMN 480
PGNCGVTAPPGGHIWLKQVEVQTHLENRCHRLKATVTTTTRPGAEPRSPPFIRTCGEIMN
Sbjct: 421 PGNCGVTAPPGGHIWLKQVEVQTHLENRCHRLKATVTTTTRPGAEPRSPPFIRTCGEIMN 480
Query: 481 VFSDMFIFRG 490
VFSDMFIFRG
Sbjct: 481 VFSDMFIFRG 490
>gi|239743215 PREDICTED: hypothetical protein [Homo sapiens]
Length = 320
Score = 663 bits (1711), Expect = 0.0
Identities = 318/320 (99%), Positives = 319/320 (99%)
Query: 171 MAHWSTLFLAVSASGFWRCCSVGPKFADPGSQDAGRAYAPRRTGRRVGLLLPLLARFAPQ 230
MAHWSTLFLAVSASGFWRCCSVGPKFADPGSQDAGRAYAPRRTGRRVGLLLPLLARFAPQ
Sbjct: 1 MAHWSTLFLAVSASGFWRCCSVGPKFADPGSQDAGRAYAPRRTGRRVGLLLPLLARFAPQ 60
Query: 231 SPSLAAFTTFIGAFWTLCLTVLKGATGRGFPRKRTPHGAPLRLQALSPRRRRGQARGAPT 290
SPSLAAFTTFIGAFWTLCLTVLKGATGRGFPRKRTPHGAPLRLQALSPRRRRGQARGAPT
Sbjct: 61 SPSLAAFTTFIGAFWTLCLTVLKGATGRGFPRKRTPHGAPLRLQALSPRRRRGQARGAPT 120
Query: 291 LGRGQGVLPARLCRAEIWCLQFTEALSELIRSHPAYQQISGECSVEALPVCTAHLPGNCS 350
LGRG+GVLPARLCRAEIWCLQFTEALSELIRSHPAYQQISGECSVEALPVCTAHLPGNCS
Sbjct: 121 LGRGRGVLPARLCRAEIWCLQFTEALSELIRSHPAYQQISGECSVEALPVCTAHLPGNCS 180
Query: 351 PERRSRPWPPAARKLQPQEPRRPRTQGTKEKGKEEGRKERKKEKVRKKTVDDRRRPQVTF 410
PERRSRPWPPAARKLQPQEPRRPRTQGTKEKGKEEGRKERKKEKVRKKTVDDRRRPQVTF
Sbjct: 181 PERRSRPWPPAARKLQPQEPRRPRTQGTKEKGKEEGRKERKKEKVRKKTVDDRRRPQVTF 240
Query: 411 QAVNLEREGAPGNCGVTAPPGGHIWLKQVEVQTHLENRCHRLKATVTTTTRPGAEPRSPP 470
QAVNLE EGAPGNCGVTAPPGGHIWLKQVEVQTHLENRCHRLKATVTTTTRPGAEPRSPP
Sbjct: 241 QAVNLESEGAPGNCGVTAPPGGHIWLKQVEVQTHLENRCHRLKATVTTTTRPGAEPRSPP 300
Query: 471 FIRTCGEIMNVFSDMFIFRG 490
FIRTCGEIMNVFSDMFIFRG
Sbjct: 301 FIRTCGEIMNVFSDMFIFRG 320
>gi|169215850 PREDICTED: transmembrane protein 46-like [Homo
sapiens]
Length = 547
Score = 39.3 bits (90), Expect = 0.008
Identities = 49/186 (26%), Positives = 63/186 (33%), Gaps = 10/186 (5%)
Query: 87 FRVFAAAITAPEEEKKATRHAESPEQARRGRDALSGSSGKVGAPSPPLACPRRRYWATGC 146
F+ A P + A R R A S S G P P L+ RR C
Sbjct: 357 FKAAALKAAVPRARRSANRLPRPSGPRPRPAPARSPSQSPAGTPCPVLSLGARRGVTLPC 416
Query: 147 PAPAHWSAAARCLQ---SHPSPSGRDAMAHWSTLFLAVSASGFWRCCSVGPKFADPGSQD 203
P PA + C + PSP A A + L C P +A P +
Sbjct: 417 PVPAEAAPRDFCQRFPALEPSPRQPPARAPRPSPDLPAPLDA---CPWAPPVYAPPAAPG 473
Query: 204 AGRAYAPRRTGRRVGLLLPLLARF-APQSPSLAA---FTTFIGAFWTLCLTVLKGATGRG 259
A+ R R L P F P+ P AA F+ + + L L G+ GRG
Sbjct: 474 PYAAWTSSRPARPAPLSHPTARAFQVPRRPGHAARRQFSVKMPETFNPQLPGLYGSAGRG 533
Query: 260 FPRKRT 265
RT
Sbjct: 534 SRYLRT 539
>gi|167614488 TBC1 domain family, member 10B [Homo sapiens]
Length = 808
Score = 38.1 bits (87), Expect = 0.018
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Query: 347 GNCSPERRSRPWPPAARKLQPQEPRRPRTQGTKEKGKEEGRKER-KKEKVRKKTVDDRRR 405
GN +P S+ ++ Q QE R + + +EK +++ KER K+EK R+K +R++
Sbjct: 710 GNSTPLGSSKETRKQEKERQKQEKERQKQEKEREKERQKQEKEREKQEKEREKQEKERQK 769
Query: 406 PQVTFQAVNLE-REGAPGNCGVTAPPGGH 433
+ Q L R A G PPG H
Sbjct: 770 QEKKAQGRKLSLRRKADG------PPGPH 792
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 37.4 bits (85), Expect = 0.031
Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 4/110 (3%)
Query: 313 TEALSELIRSHPAYQQISGECS-VEALPVC--TAHLPGNCSPERRSRPWPPAARKLQP-Q 368
T+ SE+I S A ++ E VEAL V T G PE P A ++Q +
Sbjct: 1954 TQPESEVIESQEAEEEAQPESEDVEALEVEVETQEAEGEAQPESEDVEAPEAEGEMQEAE 2013
Query: 369 EPRRPRTQGTKEKGKEEGRKERKKEKVRKKTVDDRRRPQVTFQAVNLERE 418
E +P + G + + K EG + ++ E +KT D + +A E E
Sbjct: 2014 EEAQPESDGVEAQPKSEGEEAQEVEGETQKTEGDAQPESDGVEAPEAEEE 2063
Score = 33.1 bits (74), Expect = 0.59
Identities = 32/125 (25%), Positives = 45/125 (36%), Gaps = 9/125 (7%)
Query: 314 EALSELIRSHPAYQQISGECSVEALPVCTAHLPGNCSPERRSRPWPPAARKLQPQEP-RR 372
EA E + Q+ GE E+ V G PE P A + Q E
Sbjct: 2059 EAEEEAQEAEGEVQEAEGEAHPESEDVDAQEAEGEAQPESEGVEAPEAEGEAQKAEGIEA 2118
Query: 373 PRTQGTKEKGKE-------EGRKERKKEKVRKKTVDDRRRPQVT-FQAVNLEREGAPGNC 424
P T+G + E EG + + E V + + +P+ +A E E P
Sbjct: 2119 PETEGEAQPESEGIEAPEAEGEAQPESEGVEAQDAEGEAQPESEGIEAQEAEEEAQPELE 2178
Query: 425 GVTAP 429
GV AP
Sbjct: 2179 GVEAP 2183
>gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e
[Homo sapiens]
Length = 1451
Score = 37.0 bits (84), Expect = 0.041
Identities = 40/189 (21%), Positives = 69/189 (36%), Gaps = 11/189 (5%)
Query: 254 GATGRGFPRKRTPHGAPLRLQALSPRRRRGQARGAPTLGRGQ--GVLPARLCRAEIWCLQ 311
G TG P T L SPR+ + + + G +PA A+ +
Sbjct: 133 GKTGNSMPHPATGKTVANLLSGKSPRKSAEPSANTTLVSETEEEGSVPAFGAAAKPGMVS 192
Query: 312 FTEA--LSELIRSHPAYQQISGECSVEALPVCTAHLPGNCSPERRSRPWPPAARKLQPQ- 368
+A SE S + G+ SV+ V + + SP R++ P P + PQ
Sbjct: 193 AGQADSSSEDTSSSSDETDVEGKPSVKPAQVKASSVSTKESPARKAAPAPGKVGDVTPQV 252
Query: 369 ------EPRRPRTQGTKEKGKEEGRKERKKEKVRKKTVDDRRRPQVTFQAVNLEREGAPG 422
+R + + + EEG + ++ ++ + +A + +G PG
Sbjct: 253 KGGALPPAKRAKKPEEESESSEEGSESEEEAPAGTRSQVKASEKILQVRAASAPAKGTPG 312
Query: 423 NCGVTAPPG 431
APPG
Sbjct: 313 KGATPAPPG 321
>gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d
[Homo sapiens]
Length = 1488
Score = 37.0 bits (84), Expect = 0.041
Identities = 40/189 (21%), Positives = 69/189 (36%), Gaps = 11/189 (5%)
Query: 254 GATGRGFPRKRTPHGAPLRLQALSPRRRRGQARGAPTLGRGQ--GVLPARLCRAEIWCLQ 311
G TG P T L SPR+ + + + G +PA A+ +
Sbjct: 133 GKTGNSMPHPATGKTVANLLSGKSPRKSAEPSANTTLVSETEEEGSVPAFGAAAKPGMVS 192
Query: 312 FTEA--LSELIRSHPAYQQISGECSVEALPVCTAHLPGNCSPERRSRPWPPAARKLQPQ- 368
+A SE S + G+ SV+ V + + SP R++ P P + PQ
Sbjct: 193 AGQADSSSEDTSSSSDETDVEGKPSVKPAQVKASSVSTKESPARKAAPAPGKVGDVTPQV 252
Query: 369 ------EPRRPRTQGTKEKGKEEGRKERKKEKVRKKTVDDRRRPQVTFQAVNLEREGAPG 422
+R + + + EEG + ++ ++ + +A + +G PG
Sbjct: 253 KGGALPPAKRAKKPEEESESSEEGSESEEEAPAGTRSQVKASEKILQVRAASAPAKGTPG 312
Query: 423 NCGVTAPPG 431
APPG
Sbjct: 313 KGATPAPPG 321
>gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a
[Homo sapiens]
Length = 1450
Score = 37.0 bits (84), Expect = 0.041
Identities = 40/189 (21%), Positives = 69/189 (36%), Gaps = 11/189 (5%)
Query: 254 GATGRGFPRKRTPHGAPLRLQALSPRRRRGQARGAPTLGRGQ--GVLPARLCRAEIWCLQ 311
G TG P T L SPR+ + + + G +PA A+ +
Sbjct: 133 GKTGNSMPHPATGKTVANLLSGKSPRKSAEPSANTTLVSETEEEGSVPAFGAAAKPGMVS 192
Query: 312 FTEA--LSELIRSHPAYQQISGECSVEALPVCTAHLPGNCSPERRSRPWPPAARKLQPQ- 368
+A SE S + G+ SV+ V + + SP R++ P P + PQ
Sbjct: 193 AGQADSSSEDTSSSSDETDVEGKPSVKPAQVKASSVSTKESPARKAAPAPGKVGDVTPQV 252
Query: 369 ------EPRRPRTQGTKEKGKEEGRKERKKEKVRKKTVDDRRRPQVTFQAVNLEREGAPG 422
+R + + + EEG + ++ ++ + +A + +G PG
Sbjct: 253 KGGALPPAKRAKKPEEESESSEEGSESEEEAPAGTRSQVKASEKILQVRAASAPAKGTPG 312
Query: 423 NCGVTAPPG 431
APPG
Sbjct: 313 KGATPAPPG 321
>gi|57164979 Treacher Collins-Franceschetti syndrome 1 isoform c
[Homo sapiens]
Length = 958
Score = 37.0 bits (84), Expect = 0.041
Identities = 40/189 (21%), Positives = 69/189 (36%), Gaps = 11/189 (5%)
Query: 254 GATGRGFPRKRTPHGAPLRLQALSPRRRRGQARGAPTLGRGQ--GVLPARLCRAEIWCLQ 311
G TG P T L SPR+ + + + G +PA A+ +
Sbjct: 133 GKTGNSMPHPATGKTVANLLSGKSPRKSAEPSANTTLVSETEEEGSVPAFGAAAKPGMVS 192
Query: 312 FTEA--LSELIRSHPAYQQISGECSVEALPVCTAHLPGNCSPERRSRPWPPAARKLQPQ- 368
+A SE S + G+ SV+ V + + SP R++ P P + PQ
Sbjct: 193 AGQADSSSEDTSSSSDETDVEGKPSVKPAQVKASSVSTKESPARKAAPAPGKVGDVTPQV 252
Query: 369 ------EPRRPRTQGTKEKGKEEGRKERKKEKVRKKTVDDRRRPQVTFQAVNLEREGAPG 422
+R + + + EEG + ++ ++ + +A + +G PG
Sbjct: 253 KGGALPPAKRAKKPEEESESSEEGSESEEEAPAGTRSQVKASEKILQVRAASAPAKGTPG 312
Query: 423 NCGVTAPPG 431
APPG
Sbjct: 313 KGATPAPPG 321
>gi|239742763 PREDICTED: hypothetical protein [Homo sapiens]
Length = 385
Score = 35.8 bits (81), Expect = 0.091
Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 16/91 (17%)
Query: 126 KVGAPSPPLACPRRRYWATGCPAPAHW----SAAARCLQSHPSPSGRDAMAHWSTLFLAV 181
K G+P P + +W CPAP + +++ L++H P G
Sbjct: 269 KSGSPGPASQQVSKLFWLNSCPAPNRLCRPRTFSSQALRAHLLPPGG-----------LY 317
Query: 182 SASGFWRCCSVGPKFADPGSQDAGRAYAPRR 212
S+S WR S GP A G A + PRR
Sbjct: 318 SSSTGWRTASAGPSLASQGPLQA-QLLPPRR 347
>gi|239740974 PREDICTED: hypothetical protein [Homo sapiens]
Length = 385
Score = 35.8 bits (81), Expect = 0.091
Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 16/91 (17%)
Query: 126 KVGAPSPPLACPRRRYWATGCPAPAHW----SAAARCLQSHPSPSGRDAMAHWSTLFLAV 181
K G+P P + +W CPAP + +++ L++H P G
Sbjct: 269 KSGSPGPASQQVSKLFWLNSCPAPNRLCRPRTFSSQALRAHLLPPGG-----------LY 317
Query: 182 SASGFWRCCSVGPKFADPGSQDAGRAYAPRR 212
S+S WR S GP A G A + PRR
Sbjct: 318 SSSTGWRTASAGPSLASQGPLQA-QLLPPRR 347
>gi|239744254 PREDICTED: hypothetical protein [Homo sapiens]
Length = 385
Score = 35.4 bits (80), Expect = 0.12
Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 16/91 (17%)
Query: 126 KVGAPSPPLACPRRRYWATGCPAPAHW----SAAARCLQSHPSPSGRDAMAHWSTLFLAV 181
K G+P P + +W CPAP + +++ L++H P G
Sbjct: 269 KSGSPGPASQQVSKLFWLNSCPAPNRLCRPRTFSSQALRAHLLPPGG-----------LY 317
Query: 182 SASGFWRCCSVGPKFADPGSQDAGRAYAPRR 212
S+S WR S GP A G A + PRR
Sbjct: 318 SSSTGWRTASAGPALASQGPLQA-QLLPPRR 347
>gi|239508696 PREDICTED: hypothetical protein [Homo sapiens]
Length = 385
Score = 35.4 bits (80), Expect = 0.12
Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 16/91 (17%)
Query: 126 KVGAPSPPLACPRRRYWATGCPAPAHW----SAAARCLQSHPSPSGRDAMAHWSTLFLAV 181
K G+P P + +W CPAP + +++ L++H P G
Sbjct: 269 KSGSPGPASQQVSKLFWLNSCPAPNRLCRPRTFSSQALRAHLLPPGG-----------LY 317
Query: 182 SASGFWRCCSVGPKFADPGSQDAGRAYAPRR 212
S+S WR S GP A G A + PRR
Sbjct: 318 SSSTGWRTASAGPALASQGPLQA-QLLPPRR 347
>gi|239754909 PREDICTED: hypothetical protein [Homo sapiens]
Length = 245
Score = 35.0 bits (79), Expect = 0.15
Identities = 15/43 (34%), Positives = 28/43 (65%)
Query: 363 RKLQPQEPRRPRTQGTKEKGKEEGRKERKKEKVRKKTVDDRRR 405
RK + ++ R+ R + KE+ KE RKER++ K +K ++R++
Sbjct: 178 RKEKERKERKKRERNRKERKKERERKERRERKKERKKKEERKK 220
Score = 32.3 bits (72), Expect = 1.0
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 368 QEPRRPRTQGTKEKGKEEGRKERKKEKVRKKTVDDRRRPQVTFQAVNLEREGAPG 422
+E R + + +EK K E KERK+E+ +K+ +R++ + + E+E G
Sbjct: 55 RESERKKERREREKRKREREKERKRERGKKEKKGERKKEERERKKRRREKENKEG 109
Score = 31.6 bits (70), Expect = 1.7
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 363 RKLQPQEPRRPRTQGTKEKGKEEGRKERKKEKVRKKTVDDRRR 405
+K + +E R +G + + KEE ++E +KE+ RKK ++ R
Sbjct: 116 KKKEKKERGRTSKEGKERERKEERKREERKERERKKEEREKER 158
Score = 30.4 bits (67), Expect = 3.8
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 363 RKLQPQEPRRPRTQGTKEKGKEEGRKERKKEKVRKKTVDDRRR 405
RK + +E + + + KE+ +E G+KE+K E+ +++ +RR
Sbjct: 59 RKKERREREKRKREREKERKRERGKKEKKGERKKEERERKKRR 101
Score = 29.6 bits (65), Expect = 6.5
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Query: 352 ERRSRPWPPAARKLQPQEPRRPRTQGTKEKGKEEGRKERKKEKVRKK 398
ERR R ++ + +E R R +G KEK E ++ER+++K R++
Sbjct: 62 ERRERE-----KRKREREKERKRERGKKEKKGERKKEERERKKRRRE 103
Score = 29.6 bits (65), Expect = 6.5
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 363 RKLQPQEPRRPRTQGTKEKGKEEGRKERKKEKVRKK 398
+++ +E R + + K +E RKERKKE+ RK+
Sbjct: 169 KQVGEKEEERKEKERKERKKRERNRKERKKERERKE 204
>gi|169211906 PREDICTED: hypothetical protein [Homo sapiens]
Length = 210
Score = 35.0 bits (79), Expect = 0.15
Identities = 46/143 (32%), Positives = 54/143 (37%), Gaps = 28/143 (19%)
Query: 250 TVLKGATGRGFPRKRTPHGAPLR---LQALSPRRRRGQARGAPT-LGRGQGVLPARLCRA 305
T +GA G PR R P GA L S R RR + RG + LG G PAR
Sbjct: 56 TAPRGAQG---PRSRPPLGADTSAPDLSRTSSRCRRRRRRGCVSRLGSEGGRRPAR--HR 110
Query: 306 EIWCLQFTEALSELIRSHPAYQQISGECSVEALPVCTAHLPGNCSPERRSRPWPPAARKL 365
W A Q+ ECS+ A LP PE R R PAA +L
Sbjct: 111 PTW-------------PRRAEPQVPEECSLPA-----GVLPAQHGPEPRPRGLQPAAHQL 152
Query: 366 QPQEPRRPRTQGTKEKGKEEGRK 388
P E R T + E R+
Sbjct: 153 -PGERGRGSTAAQHPRRNTESRE 174
>gi|169211049 PREDICTED: hypothetical protein [Homo sapiens]
Length = 210
Score = 35.0 bits (79), Expect = 0.15
Identities = 46/143 (32%), Positives = 54/143 (37%), Gaps = 28/143 (19%)
Query: 250 TVLKGATGRGFPRKRTPHGAPLR---LQALSPRRRRGQARGAPT-LGRGQGVLPARLCRA 305
T +GA G PR R P GA L S R RR + RG + LG G PAR
Sbjct: 56 TAPRGAQG---PRSRPPLGADTSAPDLSRTSSRCRRRRRRGCVSRLGSEGGRRPAR--HR 110
Query: 306 EIWCLQFTEALSELIRSHPAYQQISGECSVEALPVCTAHLPGNCSPERRSRPWPPAARKL 365
W A Q+ ECS+ A LP PE R R PAA +L
Sbjct: 111 PTW-------------PRRAEPQVPEECSLPA-----GVLPAQHGPEPRPRGLQPAAHQL 152
Query: 366 QPQEPRRPRTQGTKEKGKEEGRK 388
P E R T + E R+
Sbjct: 153 -PGERGRGSTAAQHPRRNTESRE 174
>gi|239757326 PREDICTED: hypothetical protein [Homo sapiens]
Length = 242
Score = 34.7 bits (78), Expect = 0.20
Identities = 33/124 (26%), Positives = 48/124 (38%), Gaps = 22/124 (17%)
Query: 103 ATRHAESPEQARRGR-DALSGSSGKVGAPSPPLACPRRRYWATGCP-------------- 147
A+R A+ +++R R A+ S G G PS P C RRRY +T P
Sbjct: 5 ASRLAKRMYRSQRPRKSAVVASLGPRGPPSSPPMCGRRRYSSTAMPTKAKTVKSVTEKAS 64
Query: 148 APAHWSAAARCLQSH------PSPSGRDAMAHWSTLFLAVSASGFWRCCSVGPKFADPGS 201
P S C + +P R+ + L + AS W CS A+ +
Sbjct: 65 VPVRTSKGRPCTAQYTAATDQATPRPRNTFTALEPVTLPMDASAHW-SCSAATLLANGVT 123
Query: 202 QDAG 205
+D G
Sbjct: 124 RDGG 127
>gi|239751833 PREDICTED: hypothetical protein [Homo sapiens]
Length = 242
Score = 34.7 bits (78), Expect = 0.20
Identities = 33/124 (26%), Positives = 48/124 (38%), Gaps = 22/124 (17%)
Query: 103 ATRHAESPEQARRGR-DALSGSSGKVGAPSPPLACPRRRYWATGCP-------------- 147
A+R A+ +++R R A+ S G G PS P C RRRY +T P
Sbjct: 5 ASRLAKRMYRSQRPRKSAVVASLGPRGPPSSPPMCGRRRYSSTAMPTKAKTVKSVTEKAS 64
Query: 148 APAHWSAAARCLQSH------PSPSGRDAMAHWSTLFLAVSASGFWRCCSVGPKFADPGS 201
P S C + +P R+ + L + AS W CS A+ +
Sbjct: 65 VPVRTSKGRPCTAQYTAATDQATPRPRNTFTALEPVTLPMDASAHW-SCSAATLLANGVT 123
Query: 202 QDAG 205
+D G
Sbjct: 124 RDGG 127
>gi|34335253 disks large-associated protein 4 isoform a [Homo
sapiens]
Length = 989
Score = 34.7 bits (78), Expect = 0.20
Identities = 31/110 (28%), Positives = 41/110 (37%), Gaps = 11/110 (10%)
Query: 377 GTKEKGKEEGRKERKKEKVRKKTVDDRRRPQVTFQAVNLEREGAPGNCGV---TAPPGGH 433
G+K+ G E+G+ R K K R K + +RR + + G G + P G
Sbjct: 168 GSKKGGMEDGKGRRAKSKERAKAGEPKRRSRSNISGWWSSDDNLDGEAGAFRSSGPASGL 227
Query: 434 IWL------KQVEVQTHLENRC--HRLKATVTTTTRPGAEPRSPPFIRTC 475
+ L Q H N H LK T TT A P P TC
Sbjct: 228 MTLGRQAERSQPRYFMHAYNTISGHMLKTTKNNTTELTAPPPPPAPPATC 277
>gi|120953300 leucine-rich repeats and IQ motif containing 1 isoform
1 [Homo sapiens]
Length = 1722
Score = 34.7 bits (78), Expect = 0.20
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Query: 350 SPERRSRPWPPAARKLQPQEPRR-------PRTQGTKEKGKEEGRKERKKEKVRKKTVDD 402
S +R+++ W K++ +E R + ++K KEE RK R+KE KK +
Sbjct: 313 SKKRKAQEWKEKEAKIRQKEEENRKRLEEEQRIKEERKKQKEEERKRREKEYEEKKNIVK 372
Query: 403 RRRPQVTFQAVNLEREGA 420
+ R Q+ + + RE A
Sbjct: 373 QEREQLISKEKIILREDA 390
>gi|120953243 leucine-rich repeats and IQ motif containing 1 isoform
2 [Homo sapiens]
Length = 1336
Score = 34.7 bits (78), Expect = 0.20
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Query: 350 SPERRSRPWPPAARKLQPQEPRR-------PRTQGTKEKGKEEGRKERKKEKVRKKTVDD 402
S +R+++ W K++ +E R + ++K KEE RK R+KE KK +
Sbjct: 313 SKKRKAQEWKEKEAKIRQKEEENRKRLEEEQRIKEERKKQKEEERKRREKEYEEKKNIVK 372
Query: 403 RRRPQVTFQAVNLEREGA 420
+ R Q+ + + RE A
Sbjct: 373 QEREQLISKEKIILREDA 390
>gi|155029548 phosphofurin acidic cluster sorting protein 2 isoform
1 [Homo sapiens]
Length = 893
Score = 34.3 bits (77), Expect = 0.26
Identities = 25/91 (27%), Positives = 35/91 (38%)
Query: 321 RSHPAYQQISGECSVEALPVCTAHLPGNCSPERRSRPWPPAARKLQPQEPRRPRTQGTKE 380
R HP + S E L V T LP + + P+ R Q RR R+ KE
Sbjct: 381 REHPGQPEDSPEAEASTLDVFTERLPPSGRITKTESLVIPSTRSEGKQAGRRGRSTSLKE 440
Query: 381 KGKEEGRKERKKEKVRKKTVDDRRRPQVTFQ 411
+ + ER ++ D R + QV Q
Sbjct: 441 RQAARPQNERANSLDNERCPDARSQLQVQLQ 471
>gi|4759100 splicing factor, arginine/serine-rich 11 [Homo sapiens]
Length = 484
Score = 34.3 bits (77), Expect = 0.26
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 11/75 (14%)
Query: 342 TAHLPGNCSPERRSR-----------PWPPAARKLQPQEPRRPRTQGTKEKGKEEGRKER 390
TA + S ERR R P P + + PRR + + K+K KE R ER
Sbjct: 332 TARRSRSASRERRRRRSRSGTRSPKKPRSPKRKLSRSPSPRRHKKEKKKDKDKERSRDER 391
Query: 391 KKEKVRKKTVDDRRR 405
++ +KK D+ +
Sbjct: 392 ERSTSKKKKSKDKEK 406
>gi|221139764 PHD and ring finger domains 1 [Homo sapiens]
Length = 1648
Score = 34.3 bits (77), Expect = 0.26
Identities = 18/74 (24%), Positives = 34/74 (45%)
Query: 350 SPERRSRPWPPAARKLQPQEPRRPRTQGTKEKGKEEGRKERKKEKVRKKTVDDRRRPQVT 409
S +R SR P+ + +P+ R + R+ K++K + K+ + RR P
Sbjct: 1024 SRDRSSRSASPSVGEERPRRQRSKAKSRRSSSDRSSSRERAKRKKAKDKSREHRRGPWGH 1083
Query: 410 FQAVNLEREGAPGN 423
+ + R G+PG+
Sbjct: 1084 SRRTSRSRSGSPGS 1097
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 34.3 bits (77), Expect = 0.26
Identities = 67/244 (27%), Positives = 88/244 (36%), Gaps = 37/244 (15%)
Query: 80 PATLALGFRVFAAAITAPEEEKKATRHAESPEQARR--GRDALSGSSGKVGAPSPPLACP 137
P+ + L F A AP++ + + SP++AR + S GAP+PP A P
Sbjct: 888 PSVVNLPFPKEGPATPAPKQAPALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAATP 947
Query: 138 RRRYWATGCPAPAHWSAAARCLQSHPSPSGRDAMAH---WSTLFLAVSASGFWRCCSVGP 194
P+P W A + PSP G A T A S + P
Sbjct: 948 PSPKGGPATPSP-KW-APTPPAATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSP 1005
Query: 195 KFA--DPGSQDAGRAYAPRRTGRRVGLLLPLLARFAPQSP--SLAAFTTFIGAFWTLCLT 250
K A P +P T G P A P SP S AA GA T T
Sbjct: 1006 KGAPTPPAVTPPSPKGSPAATPFPKGASTPPAA--TPPSPKGSPAATPLPKGAPTTPAAT 1063
Query: 251 V-----------LKGA---------TGRGFPRKRTPHGAPLRLQALSPRRRRGQA----R 286
+ LKGA + +G P +P GAP+ A P + G A +
Sbjct: 1064 LPSPKGGPATPSLKGAPTPPAATPPSPKGGPATPSPKGAPMPPAATPPSPKGGLATPPHK 1123
Query: 287 GAPT 290
GAPT
Sbjct: 1124 GAPT 1127
>gi|224465238 hypothetical protein LOC283999 [Homo sapiens]
Length = 394
Score = 33.5 bits (75), Expect = 0.45
Identities = 27/80 (33%), Positives = 32/80 (40%), Gaps = 9/80 (11%)
Query: 353 RRSRPWPPAARKLQPQEPRRPRTQGTKEKGKEEGRKERKKEKVRKKTVDDRRRPQVTFQA 412
RR+RP PP R P+ PRRPR T + GR + RRP T Q
Sbjct: 149 RRARP-PPVPRLPAPRAPRRPRGPATPDPSPPAGRPHGPAGRAA-----PGRRPGCTAQ- 201
Query: 413 VNLEREGAPGNCGVTAPPGG 432
L G G + PGG
Sbjct: 202 --LRAPGRRGRQRLLVHPGG 219
>gi|24497554 homeobox A13 [Homo sapiens]
Length = 388
Score = 33.5 bits (75), Expect = 0.45
Identities = 40/174 (22%), Positives = 65/174 (37%), Gaps = 14/174 (8%)
Query: 44 AAGAGAAHLLAGAWLVLSTSCRPRAPLMLNASAACAPATLALGFRVFAAAITAPEEEKKA 103
AA A AA G + + A+AA A A A R A AP A
Sbjct: 44 AAAAAAAAGAGGGGFPHPAAAAAGGNFSVAAAAAAAAAAAANQCRNLMAH-PAPLAPGAA 102
Query: 104 TRHAESPEQARRGRDALSGSSGKVGAPSPPLACPRRRYWATGCPAPAHWSAAARCLQSHP 163
+ ++ +P +A A + ++ A + + ++G P PA + A Q P
Sbjct: 103 SAYSSAPGEAPPSAAAAAAAAAAAAAAAAAAS-------SSGGPGPAGPAGAEAAKQCSP 155
Query: 164 SPSGRDAMAHWSTLFLAVSASGFWRCCSVGP------KFADPGSQDAGRAYAPR 211
+ + + + L SG++ C +GP A P S A A+A +
Sbjct: 156 CSAAAQSSSGPAALPYGYFGSGYYPCARMGPHPNAIKSCAQPASAAAAAAFADK 209
>gi|239757964 PREDICTED: hypothetical protein [Homo sapiens]
Length = 290
Score = 33.5 bits (75), Expect = 0.45
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 372 RPRTQGTKEKGKEEGRKERKKEKVRKKTVDDRR 404
R R + KE+ K+E +KERKKE+ KK + RR
Sbjct: 245 RDRERDRKEERKKERKKERKKERKEKKKEEKRR 277
Score = 30.8 bits (68), Expect = 2.9
Identities = 13/38 (34%), Positives = 26/38 (68%)
Query: 368 QEPRRPRTQGTKEKGKEEGRKERKKEKVRKKTVDDRRR 405
++ R R + K++ K+E +KERK++K +K +D++R
Sbjct: 245 RDRERDRKEERKKERKKERKKERKEKKKEEKRREDKKR 282
>gi|169213977 PREDICTED: hypothetical protein [Homo sapiens]
Length = 277
Score = 33.5 bits (75), Expect = 0.45
Identities = 44/146 (30%), Positives = 59/146 (40%), Gaps = 33/146 (22%)
Query: 254 GATGRGFPRKRTPH-------GAPLRLQALSPRRRRGQARGAPT-LGRGQGVLPARLCRA 305
G+TGRG P R+PH G P ++LSPR G T +GR +R CR
Sbjct: 66 GSTGRGGPNARSPHPLGPAGAGVP---RSLSPRPVPGSEPSTGTRVGRQGHGERSRRCRC 122
Query: 306 EIWCLQFTEALSELIRSHPAYQQISGECSVEALPVCTAHLPGNCSPERRSRP-----WPP 360
CL +A S +S P Y Q+ G LP P +R + W
Sbjct: 123 ---CL--GDAASPWAQSLP-YTQVQGG---------RGFLPEEVGPHQRGQEGAGTGWGD 167
Query: 361 AARKLQPQEPRRPRTQGTKE--KGKE 384
A + P P G++E +GKE
Sbjct: 168 ATLSRRNCTPTPPYAGGSREPARGKE 193
>gi|239752303 PREDICTED: hypothetical protein XP_002348193 [Homo
sapiens]
Length = 258
Score = 33.5 bits (75), Expect = 0.45
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 10/90 (11%)
Query: 60 LSTSCRPRAPLMLNASAACAPATLALGFRVFAAAITAPEEEKKATRHAESPEQARRGRDA 119
L+ SCR + +AS + A +++AL ++ APEEE +A SP+ + G +
Sbjct: 40 LTLSCR----WLSSASFSVASSSMAL-----LSSAAAPEEEAEAAAATRSPQPSSSGSSS 90
Query: 120 LSGSSGKVGAPSPPLACPRRRYWATGCPAP 149
G V P P A G PAP
Sbjct: 91 SRGGGAPVARPEPGRAASPGS-MVPGPPAP 119
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.132 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,873,579
Number of Sequences: 37866
Number of extensions: 1330811
Number of successful extensions: 9054
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 161
Number of HSP's that attempted gapping in prelim test: 8264
Number of HSP's gapped (non-prelim): 785
length of query: 490
length of database: 18,247,518
effective HSP length: 106
effective length of query: 384
effective length of database: 14,233,722
effective search space: 5465749248
effective search space used: 5465749248
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.