Guide to the Human Genome
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Name: LOC100132287 Sequence: fasta or formatted (385aa) NCBI GI: 239740974
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.1         39           1
 C cysteine            1.8          7           1
 D aspartate           1.3          5           1
 E glutamate           0.5          2           1
 F phenylalanine       3.1         12           2
 G glycine             6.5         25           2
 H histidine           2.6         10           1
 I isoleucine          1.3          5           1
 K lysine              1.8          7           1
 L leucine            12.2         47           2
 M methionine          1.3          5           1
 N asparagine          1.3          5           1
 P proline            17.7         68           2
 Q glutamine           8.1         31           2
 R arginine            6.5         25           2
 S serine             14.8         57           3
 T threonine           2.9         11           2
 V valine              2.6         10           2
 W tryptophan          2.6         10           1
 Y tyrosine            1.0          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100132062          0.997   PREDICTED: hypothetical protein 
LOC100132062          0.978   PREDICTED: hypothetical protein 
LOC100133161          0.977   PREDICTED: hypothetical protein 
LOC731275             0.899   PREDICTED: hypothetical protein 
LOC100133331          0.309   PREDICTED: hypothetical protein 
LOC100128326          0.291   PREDICTED: hypothetical protein 
LOC100128326          0.291   PREDICTED: hypothetical protein 
LOC728417             0.289   PREDICTED: hypothetical protein 
LOC728417             0.289   PREDICTED: hypothetical protein 
LOC728417             0.289   PREDICTED: hypothetical protein isoform 1 
LOC100128326          0.286   PREDICTED: hypothetical protein 
LOC730826             0.263   PREDICTED: hypothetical protein 
LOC100287258          0.252   PREDICTED: hypothetical protein XP_002342766 
LOC100287258          0.252   PREDICTED: hypothetical protein 
LOC100288155          0.249   PREDICTED: hypothetical protein XP_002342801, parti...
LOC100288155          0.249   PREDICTED: hypothetical protein, partial 
LOC100290352          0.235   PREDICTED: hypothetical protein XP_002347695, parti...
LOC100294359          0.205   PREDICTED: hypothetical protein 
LOC728417             0.202   PREDICTED: hypothetical protein isoform 2 
LOC100129904          0.181   PREDICTED: hypothetical protein 
LOC100129904          0.181   PREDICTED: hypothetical protein 
LOC100129904          0.181   PREDICTED: hypothetical protein 
LOC100129904          0.181   PREDICTED: hypothetical protein 
LOC729737             0.173   PREDICTED: hypothetical protein 
LOC100132050          0.087   PREDICTED: similar to hCG1779533 
LOC100132050          0.087   PREDICTED: similar to hCG1779533 
LOC100292470          0.086   PREDICTED: similar to hCG1779533 
LOC729218             0.082   PREDICTED: hypothetical protein 
LOC100287093          0.074   PREDICTED: hypothetical protein XP_002342765 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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