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Search of human proteins with 239754442
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239754442 PREDICTED: hypothetical protein [Homo sapiens]
(319 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754442 PREDICTED: hypothetical protein [Homo sapiens] 660 0.0
gi|239748993 PREDICTED: hypothetical protein XP_002346876 [Homo ... 501 e-142
gi|239743015 PREDICTED: hypothetical protein XP_002342718 [Homo ... 501 e-142
gi|195927059 axin 2 [Homo sapiens] 33 0.34
gi|149944560 forkhead box D4-like 2 [Homo sapiens] 32 0.57
gi|111074524 Src homology 2 domain containing F [Homo sapiens] 32 0.57
gi|187423902 forkhead box D4-like 5 [Homo sapiens] 32 0.57
gi|146262007 forkhead box D4-like 6 [Homo sapiens] 32 0.57
gi|76880472 forkhead box D4-like 4 [Homo sapiens] 32 0.57
gi|27886561 nuclear factor of activated T-cells, cytoplasmic, ca... 32 0.75
gi|27886559 nuclear factor of activated T-cells, cytoplasmic, ca... 32 0.75
gi|27886555 nuclear factor of activated T-cells, cytoplasmic, ca... 32 0.75
gi|4758804 nuclear factor of activated T-cells, cytoplasmic, cal... 32 0.75
gi|239754405 PREDICTED: hypothetical protein [Homo sapiens] 32 0.75
gi|239748958 PREDICTED: hypothetical protein XP_002346866 [Homo ... 32 0.75
gi|7705353 three prime repair exonuclease 1 isoform a [Homo sapi... 32 0.98
gi|7706469 Kruppel-like factor [Homo sapiens] 32 0.98
gi|171543895 ataxin 2 [Homo sapiens] 32 0.98
gi|151108509 Rho GTPase-activating protein RICH2 [Homo sapiens] 32 0.98
gi|38146118 hypothetical protein LOC10712 isoform b [Homo sapiens] 31 1.3
gi|38146116 hypothetical protein LOC10712 isoform a [Homo sapiens] 31 1.3
gi|222136583 inositol polyphosphate phosphatase-like 1 [Homo sap... 31 1.3
gi|169160903 PREDICTED: hypothetical protein [Homo sapiens] 31 1.7
gi|50843837 hypothetical protein LOC55701 [Homo sapiens] 31 1.7
gi|62955833 DNA-damage inducible protein 2 [Homo sapiens] 31 1.7
gi|126362967 Nck-associated protein 5 isoform 1 [Homo sapiens] 30 2.2
gi|239744358 PREDICTED: hypothetical protein XP_002343105 [Homo ... 30 2.2
gi|110611908 mitogen-activated protein kinase kinase kinase kina... 30 2.2
gi|6005810 mitogen-activated protein kinase kinase kinase kinase... 30 2.2
gi|148612882 cat eye syndrome chromosome region, candidate 2 [Ho... 30 2.2
>gi|239754442 PREDICTED: hypothetical protein [Homo sapiens]
Length = 319
Score = 660 bits (1703), Expect = 0.0
Identities = 319/319 (100%), Positives = 319/319 (100%)
Query: 1 MIATVLLEPEPTNSVTETGGVDVMRVPCRSPGARRRAFRSSGPQSSLSPRGKLPPGLAQP 60
MIATVLLEPEPTNSVTETGGVDVMRVPCRSPGARRRAFRSSGPQSSLSPRGKLPPGLAQP
Sbjct: 1 MIATVLLEPEPTNSVTETGGVDVMRVPCRSPGARRRAFRSSGPQSSLSPRGKLPPGLAQP 60
Query: 61 HLLPGFSLVCLPFLLPANHSRAHASPSLWGPGPIKPGPRTHQTKAPEIHQAAWLSGFSLT 120
HLLPGFSLVCLPFLLPANHSRAHASPSLWGPGPIKPGPRTHQTKAPEIHQAAWLSGFSLT
Sbjct: 61 HLLPGFSLVCLPFLLPANHSRAHASPSLWGPGPIKPGPRTHQTKAPEIHQAAWLSGFSLT 120
Query: 121 VAFRVCSFTICTPLCLLQDSVHWPLLPNAFLEKLQTQLEYLNFCQNPRLLTRDAQPQWRH 180
VAFRVCSFTICTPLCLLQDSVHWPLLPNAFLEKLQTQLEYLNFCQNPRLLTRDAQPQWRH
Sbjct: 121 VAFRVCSFTICTPLCLLQDSVHWPLLPNAFLEKLQTQLEYLNFCQNPRLLTRDAQPQWRH 180
Query: 181 LASSPLPVSCSGIWRSSFQESAHTRLNCHDDGRAGRVIHPAILAGTQRQVAPVGGQASQG 240
LASSPLPVSCSGIWRSSFQESAHTRLNCHDDGRAGRVIHPAILAGTQRQVAPVGGQASQG
Sbjct: 181 LASSPLPVSCSGIWRSSFQESAHTRLNCHDDGRAGRVIHPAILAGTQRQVAPVGGQASQG 240
Query: 241 VYTAEGALVPVHFIAPALAKEGLARGPQAWHCIVQLLRRAPATALAQLSHPRTLAVVVRC 300
VYTAEGALVPVHFIAPALAKEGLARGPQAWHCIVQLLRRAPATALAQLSHPRTLAVVVRC
Sbjct: 241 VYTAEGALVPVHFIAPALAKEGLARGPQAWHCIVQLLRRAPATALAQLSHPRTLAVVVRC 300
Query: 301 ETQEDDAHTDGRKGSRQQA 319
ETQEDDAHTDGRKGSRQQA
Sbjct: 301 ETQEDDAHTDGRKGSRQQA 319
>gi|239748993 PREDICTED: hypothetical protein XP_002346876 [Homo
sapiens]
Length = 552
Score = 501 bits (1291), Expect = e-142
Identities = 240/241 (99%), Positives = 240/241 (99%)
Query: 79 HSRAHASPSLWGPGPIKPGPRTHQTKAPEIHQAAWLSGFSLTVAFRVCSFTICTPLCLLQ 138
H RAHASPSLWGPGPIKPGPRTHQTKAPEIHQAAWLSGFSLTVAFRVCSFTICTPLCLLQ
Sbjct: 312 HHRAHASPSLWGPGPIKPGPRTHQTKAPEIHQAAWLSGFSLTVAFRVCSFTICTPLCLLQ 371
Query: 139 DSVHWPLLPNAFLEKLQTQLEYLNFCQNPRLLTRDAQPQWRHLASSPLPVSCSGIWRSSF 198
DSVHWPLLPNAFLEKLQTQLEYLNFCQNPRLLTRDAQPQWRHLASSPLPVSCSGIWRSSF
Sbjct: 372 DSVHWPLLPNAFLEKLQTQLEYLNFCQNPRLLTRDAQPQWRHLASSPLPVSCSGIWRSSF 431
Query: 199 QESAHTRLNCHDDGRAGRVIHPAILAGTQRQVAPVGGQASQGVYTAEGALVPVHFIAPAL 258
QESAHTRLNCHDDGRAGRVIHPAILAGTQRQVAPVGGQASQGVYTAEGALVPVHFIAPAL
Sbjct: 432 QESAHTRLNCHDDGRAGRVIHPAILAGTQRQVAPVGGQASQGVYTAEGALVPVHFIAPAL 491
Query: 259 AKEGLARGPQAWHCIVQLLRRAPATALAQLSHPRTLAVVVRCETQEDDAHTDGRKGSRQQ 318
AKEGLARGPQAWHCIVQLLRRAPATALAQLSHPRTLAVVVRCETQEDDAHTDGRKGSRQQ
Sbjct: 492 AKEGLARGPQAWHCIVQLLRRAPATALAQLSHPRTLAVVVRCETQEDDAHTDGRKGSRQQ 551
Query: 319 A 319
A
Sbjct: 552 A 552
>gi|239743015 PREDICTED: hypothetical protein XP_002342718 [Homo
sapiens]
Length = 552
Score = 501 bits (1291), Expect = e-142
Identities = 240/241 (99%), Positives = 240/241 (99%)
Query: 79 HSRAHASPSLWGPGPIKPGPRTHQTKAPEIHQAAWLSGFSLTVAFRVCSFTICTPLCLLQ 138
H RAHASPSLWGPGPIKPGPRTHQTKAPEIHQAAWLSGFSLTVAFRVCSFTICTPLCLLQ
Sbjct: 312 HHRAHASPSLWGPGPIKPGPRTHQTKAPEIHQAAWLSGFSLTVAFRVCSFTICTPLCLLQ 371
Query: 139 DSVHWPLLPNAFLEKLQTQLEYLNFCQNPRLLTRDAQPQWRHLASSPLPVSCSGIWRSSF 198
DSVHWPLLPNAFLEKLQTQLEYLNFCQNPRLLTRDAQPQWRHLASSPLPVSCSGIWRSSF
Sbjct: 372 DSVHWPLLPNAFLEKLQTQLEYLNFCQNPRLLTRDAQPQWRHLASSPLPVSCSGIWRSSF 431
Query: 199 QESAHTRLNCHDDGRAGRVIHPAILAGTQRQVAPVGGQASQGVYTAEGALVPVHFIAPAL 258
QESAHTRLNCHDDGRAGRVIHPAILAGTQRQVAPVGGQASQGVYTAEGALVPVHFIAPAL
Sbjct: 432 QESAHTRLNCHDDGRAGRVIHPAILAGTQRQVAPVGGQASQGVYTAEGALVPVHFIAPAL 491
Query: 259 AKEGLARGPQAWHCIVQLLRRAPATALAQLSHPRTLAVVVRCETQEDDAHTDGRKGSRQQ 318
AKEGLARGPQAWHCIVQLLRRAPATALAQLSHPRTLAVVVRCETQEDDAHTDGRKGSRQQ
Sbjct: 492 AKEGLARGPQAWHCIVQLLRRAPATALAQLSHPRTLAVVVRCETQEDDAHTDGRKGSRQQ 551
Query: 319 A 319
A
Sbjct: 552 A 552
>gi|195927059 axin 2 [Homo sapiens]
Length = 843
Score = 33.1 bits (74), Expect = 0.34
Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 11/53 (20%)
Query: 23 VMRVP-CRSPGARRRAFRSSGPQ----------SSLSPRGKLPPGLAQPHLLP 64
V++ P C+SPG R + RS P S L P GKLPP A P P
Sbjct: 446 VLKTPGCQSPGVGRYSPRSRSPDHHHHHHSQYHSLLPPGGKLPPAAASPGACP 498
>gi|149944560 forkhead box D4-like 2 [Homo sapiens]
Length = 416
Score = 32.3 bits (72), Expect = 0.57
Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 13/60 (21%)
Query: 50 RGKLPPGLAQPHLLPGFSLVCLPFLLPANHS---RAHASPSLWGPGPIKPGPRTHQTKAP 106
R +L PG PH PF LPA H+ H P L P P +P P + AP
Sbjct: 206 RHQLTPGAHLPH----------PFPLPAAHAALHNPHPGPLLGAPAPPQPVPGAYPNTAP 255
>gi|111074524 Src homology 2 domain containing F [Homo sapiens]
Length = 423
Score = 32.3 bits (72), Expect = 0.57
Identities = 26/80 (32%), Positives = 32/80 (40%), Gaps = 9/80 (11%)
Query: 20 GVDVMRVPCRSPGARRRAFRSSGPQSSLSPRGKLPPGLAQPHLLPGFSLVCLPFLLPANH 79
G V PCR+ S G + SP+G L AQPH S + P P N
Sbjct: 5 GGPVRSAPCRTGTLEGSRQGSPGHRKRASPKGSLSS--AQPH-----SWMLTPS--PLNS 55
Query: 80 SRAHASPSLWGPGPIKPGPR 99
AH P P P+ GP+
Sbjct: 56 HCAHREPISSSPQPVANGPK 75
>gi|187423902 forkhead box D4-like 5 [Homo sapiens]
Length = 416
Score = 32.3 bits (72), Expect = 0.57
Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 13/60 (21%)
Query: 50 RGKLPPGLAQPHLLPGFSLVCLPFLLPANHS---RAHASPSLWGPGPIKPGPRTHQTKAP 106
R +L PG PH PF LPA H+ H P L P P +P P + AP
Sbjct: 206 RHQLTPGAHLPH----------PFPLPAAHAALHNPHPGPLLGAPAPPQPVPGAYPNTAP 255
>gi|146262007 forkhead box D4-like 6 [Homo sapiens]
Length = 417
Score = 32.3 bits (72), Expect = 0.57
Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 13/60 (21%)
Query: 50 RGKLPPGLAQPHLLPGFSLVCLPFLLPANHS---RAHASPSLWGPGPIKPGPRTHQTKAP 106
R +L PG PH PF LPA H+ H P L P P +P P + AP
Sbjct: 206 RHQLTPGAHLPH----------PFPLPAAHAALHNPHPGPLLGAPAPPQPVPGAYPNTAP 255
>gi|76880472 forkhead box D4-like 4 [Homo sapiens]
Length = 416
Score = 32.3 bits (72), Expect = 0.57
Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 13/60 (21%)
Query: 50 RGKLPPGLAQPHLLPGFSLVCLPFLLPANHS---RAHASPSLWGPGPIKPGPRTHQTKAP 106
R +L PG PH PF LPA H+ H P L P P +P P + AP
Sbjct: 206 RHQLTPGAHLPH----------PFPLPAAHAALHNPHPGPLLGAPAPPQPVPGAYPNTAP 255
>gi|27886561 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 3 isoform 1 [Homo sapiens]
Length = 1075
Score = 32.0 bits (71), Expect = 0.75
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 12/85 (14%)
Query: 129 TICTPLCLLQDSV--HWPLLPNAFLEKLQTQLEYLNFCQNPRLLTRDAQPQWRHLASSPL 186
T+ TPLCL + H +L +F +LQ+ Y C+ P + ++ L P
Sbjct: 55 TLTTPLCLPHHGLPSHSSVLSPSF--QLQSHKNYEGTCEIP-------ESKYSPLGG-PK 104
Query: 187 PVSCSGIWRSSFQESAHTRLNCHDD 211
P C I +S + H L+ H+D
Sbjct: 105 PFECPSIQITSISPNCHQELDAHED 129
>gi|27886559 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 3 isoform 4 [Homo sapiens]
Length = 1045
Score = 32.0 bits (71), Expect = 0.75
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 12/85 (14%)
Query: 129 TICTPLCLLQDSV--HWPLLPNAFLEKLQTQLEYLNFCQNPRLLTRDAQPQWRHLASSPL 186
T+ TPLCL + H +L +F +LQ+ Y C+ P + ++ L P
Sbjct: 55 TLTTPLCLPHHGLPSHSSVLSPSF--QLQSHKNYEGTCEIP-------ESKYSPLGG-PK 104
Query: 187 PVSCSGIWRSSFQESAHTRLNCHDD 211
P C I +S + H L+ H+D
Sbjct: 105 PFECPSIQITSISPNCHQELDAHED 129
>gi|27886555 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 3 isoform 3 [Homo sapiens]
Length = 1065
Score = 32.0 bits (71), Expect = 0.75
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 12/85 (14%)
Query: 129 TICTPLCLLQDSV--HWPLLPNAFLEKLQTQLEYLNFCQNPRLLTRDAQPQWRHLASSPL 186
T+ TPLCL + H +L +F +LQ+ Y C+ P + ++ L P
Sbjct: 55 TLTTPLCLPHHGLPSHSSVLSPSF--QLQSHKNYEGTCEIP-------ESKYSPLGG-PK 104
Query: 187 PVSCSGIWRSSFQESAHTRLNCHDD 211
P C I +S + H L+ H+D
Sbjct: 105 PFECPSIQITSISPNCHQELDAHED 129
>gi|4758804 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 3 isoform 2 [Homo sapiens]
Length = 1068
Score = 32.0 bits (71), Expect = 0.75
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 12/85 (14%)
Query: 129 TICTPLCLLQDSV--HWPLLPNAFLEKLQTQLEYLNFCQNPRLLTRDAQPQWRHLASSPL 186
T+ TPLCL + H +L +F +LQ+ Y C+ P + ++ L P
Sbjct: 55 TLTTPLCLPHHGLPSHSSVLSPSF--QLQSHKNYEGTCEIP-------ESKYSPLGG-PK 104
Query: 187 PVSCSGIWRSSFQESAHTRLNCHDD 211
P C I +S + H L+ H+D
Sbjct: 105 PFECPSIQITSISPNCHQELDAHED 129
>gi|239754405 PREDICTED: hypothetical protein [Homo sapiens]
Length = 230
Score = 32.0 bits (71), Expect = 0.75
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 66 FSLVCLPFLLPANHSRAHASPSLWGPGPIKPGPRTHQTKAPEIHQAAWLSGFSLTVAF 123
F++ PFL P SR+ A PG P R +AP H+ A + G L +AF
Sbjct: 136 FTIPRSPFLSPGTLSRSPAGSR--DPGNPAPAARRPPLRAPSCHEGARVGGLLLYLAF 191
>gi|239748958 PREDICTED: hypothetical protein XP_002346866 [Homo
sapiens]
Length = 230
Score = 32.0 bits (71), Expect = 0.75
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 66 FSLVCLPFLLPANHSRAHASPSLWGPGPIKPGPRTHQTKAPEIHQAAWLSGFSLTVAF 123
F++ PFL P SR+ A PG P R +AP H+ A + G L +AF
Sbjct: 136 FTIPRSPFLSPGTLSRSPAGSR--DPGNPAPAARRPPLRAPSCHEGARVGGLLLYLAF 191
>gi|7705353 three prime repair exonuclease 1 isoform a [Homo
sapiens]
Length = 369
Score = 31.6 bits (70), Expect = 0.98
Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 16/81 (19%)
Query: 27 PCRSPGARRRAFRSSGPQSSLSPRGKLPPGLAQPHLLPGFSLVCLPF---------LLPA 77
PC SPG+ + + G Q+ LPPG Q + LPF LL
Sbjct: 42 PCSSPGSAAGTYPTMGSQA-------LPPGPMQTLIFFDMEATGLPFSQPKVTELCLLAV 94
Query: 78 NHSRAHASPSLWGPGPIKPGP 98
+ + P+ GP P P P
Sbjct: 95 HRCALESPPTSQGPPPTVPPP 115
>gi|7706469 Kruppel-like factor [Homo sapiens]
Length = 355
Score = 31.6 bits (70), Expect = 0.98
Identities = 24/62 (38%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
Query: 42 GPQSSL--SPRGKLPPGLAQPHLLPGFSLVCLPFLLPANHSRAHASPSLWGPGPIKPGPR 99
GP +S P G+ PP P L P P LPA RA P GPG PGP
Sbjct: 154 GPAASCMRGPGGRPPPPPDTPPLSPDG-----PARLPAPGPRASFPPPFGGPGFGAPGPG 208
Query: 100 TH 101
H
Sbjct: 209 LH 210
>gi|171543895 ataxin 2 [Homo sapiens]
Length = 1313
Score = 31.6 bits (70), Expect = 0.98
Identities = 25/81 (30%), Positives = 33/81 (40%), Gaps = 16/81 (19%)
Query: 27 PCRSPGARRRAFRSSGPQSSLSPRGKLPPGLAQPHLLPGFSLVCLPFLLPANHSRAHASP 86
PC SP +R + SGP S LPP A P P P+ SR + P
Sbjct: 555 PCPSPSSRPPSRYQSGPNS-------LPPRAATPTRPPSRP--------PSRPSRPPSHP 599
Query: 87 SLWG-PGPIKPGPRTHQTKAP 106
S G P P+ P+ ++ P
Sbjct: 600 SAHGSPAPVSTMPKRMSSEGP 620
>gi|151108509 Rho GTPase-activating protein RICH2 [Homo sapiens]
Length = 818
Score = 31.6 bits (70), Expect = 0.98
Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
Query: 42 GPQSSLSPRGKLPPGLAQPHLLPGFS--LVCLPFLLPANHSRAHASPSLWGPGPIKPGPR 99
G Q SP PP PH L S L +P +P A A S P P+ P
Sbjct: 623 GAQPGASPSPSQPPADQSPHTLRKVSKKLAPIPPKVPFGQPGAMADQSAGQPSPVSLSPT 682
Query: 100 THQTKAPEIHQAAWLSGFSL 119
T +P + ++ G+SL
Sbjct: 683 PPSTPSP--YGLSYPQGYSL 700
>gi|38146118 hypothetical protein LOC10712 isoform b [Homo sapiens]
Length = 572
Score = 31.2 bits (69), Expect = 1.3
Identities = 27/72 (37%), Positives = 30/72 (41%), Gaps = 15/72 (20%)
Query: 9 PEPTNSVTETGGVDVMRVPCRSPGARRRAFRSSGPQSSLSPRGKLPPGLAQPHLLPGFSL 68
PE V GG P R+P RR SSG SL+P G PP A P
Sbjct: 341 PELRRRVPRGGGRPAAAPPTRAP--TRRFSDSSG---SLTPPGHRPPHPASPP------- 388
Query: 69 VCLPFLLPANHS 80
P LLP +HS
Sbjct: 389 ---PLLLPRSHS 397
>gi|38146116 hypothetical protein LOC10712 isoform a [Homo sapiens]
Length = 668
Score = 31.2 bits (69), Expect = 1.3
Identities = 27/72 (37%), Positives = 30/72 (41%), Gaps = 15/72 (20%)
Query: 9 PEPTNSVTETGGVDVMRVPCRSPGARRRAFRSSGPQSSLSPRGKLPPGLAQPHLLPGFSL 68
PE V GG P R+P RR SSG SL+P G PP A P
Sbjct: 437 PELRRRVPRGGGRPAAAPPTRAP--TRRFSDSSG---SLTPPGHRPPHPASPP------- 484
Query: 69 VCLPFLLPANHS 80
P LLP +HS
Sbjct: 485 ---PLLLPRSHS 493
>gi|222136583 inositol polyphosphate phosphatase-like 1 [Homo sapiens]
Length = 1258
Score = 31.2 bits (69), Expect = 1.3
Identities = 30/101 (29%), Positives = 35/101 (34%), Gaps = 7/101 (6%)
Query: 6 LLEPEPTNSV-----TETGGVDVMRVPCRSPGARRRAFRSSGPQSSLSPRGKLPPGLAQP 60
LL PEP + + T + VP G R G S G LPP P
Sbjct: 996 LLPPEPPSPARAPVPSATKNKVAITVPAPQLGHHRHPRVGEGSSSDEESGGTLPPPDFPP 1055
Query: 61 HLLPGFSLVCLPFL--LPANHSRAHASPSLWGPGPIKPGPR 99
LP ++ P L LP R GP P K PR
Sbjct: 1056 PPLPDSAIFLPPSLDPLPGPVVRGRGGAEARGPPPPKAHPR 1096
>gi|169160903 PREDICTED: hypothetical protein [Homo sapiens]
Length = 426
Score = 30.8 bits (68), Expect = 1.7
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 82 AHASPSLWGPGPIKPGPRTHQTKAPEIHQAAWLSG 116
A SP+ P PI P P+ T+A E AAW +G
Sbjct: 34 AVCSPTARAPPPILPAPQRPPTRAREWEGAAWAAG 68
>gi|50843837 hypothetical protein LOC55701 [Homo sapiens]
Length = 1519
Score = 30.8 bits (68), Expect = 1.7
Identities = 31/105 (29%), Positives = 41/105 (39%), Gaps = 11/105 (10%)
Query: 4 TVLLEPEPTNSVTETGGVDVMRVPCRSPGA---RRRAFRSSGPQSSLSPRGK---LPPGL 57
T+ + PT++ G V VP R R R R+ Q L PRG+ PPG
Sbjct: 249 TLPVRGSPTDAEGSPGLSRVRTVPTRKGAGGKGRHRRHRAWMHQKGLGPRGQDGARPPGE 308
Query: 58 -----AQPHLLPGFSLVCLPFLLPANHSRAHASPSLWGPGPIKPG 97
A P PG V +L + A A G P++PG
Sbjct: 309 GSSTGASPESPPGAEAVPEAAVLEVSEPPAEAVGEASGSCPLRPG 353
>gi|62955833 DNA-damage inducible protein 2 [Homo sapiens]
Length = 399
Score = 30.8 bits (68), Expect = 1.7
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 25 RVPCRSPGARRRAFRSSGPQSSLSPRGKLPPGLAQPHLLPG 65
R P + P R F S + SPR + PPG Q H PG
Sbjct: 83 RPPVQFPNLPRIDFSSIAVPGTSSPRQRQPPGTQQSHSSPG 123
>gi|126362967 Nck-associated protein 5 isoform 1 [Homo sapiens]
Length = 1909
Score = 30.4 bits (67), Expect = 2.2
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 6 LLEPEPTNSVTETGGVDVMRVPCRSPGARRRAFR--SSGPQSSLSPRGKLPPGLAQ-PH 61
L+EPE T + +G V + + P +PG R + SSGP L +P AQ PH
Sbjct: 816 LMEPEATTLLPSSGLVTLEKSPALAPGKLSRFMKTESSGPLFELRSDPHIPKHSAQLPH 874
>gi|239744358 PREDICTED: hypothetical protein XP_002343105 [Homo
sapiens]
Length = 767
Score = 30.4 bits (67), Expect = 2.2
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 81 RAHASPSLWGPGPIKPGPRTHQTKAPEIHQAAW 113
RA A+ +W GP +PGP + A HQ W
Sbjct: 166 RADAALPVWPGGPGRPGPHAPEAGAEGQHQGQW 198
>gi|110611908 mitogen-activated protein kinase kinase kinase kinase
1 isoform 1 [Homo sapiens]
Length = 821
Score = 30.4 bits (67), Expect = 2.2
Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 21/62 (33%)
Query: 30 SPGARRRAFRSSGPQSSLSPRGKLPPGLAQPHLLPGFSLVCLPFLLPANHSRAHASPSLW 89
SPG R +SGP + SPR PP + PHL AH+ PSLW
Sbjct: 421 SPGVLVRC--ASGPPPN-SPRPGPPPSTSSPHLT------------------AHSEPSLW 459
Query: 90 GP 91
P
Sbjct: 460 NP 461
>gi|6005810 mitogen-activated protein kinase kinase kinase kinase 1
isoform 2 [Homo sapiens]
Length = 833
Score = 30.4 bits (67), Expect = 2.2
Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 21/62 (33%)
Query: 30 SPGARRRAFRSSGPQSSLSPRGKLPPGLAQPHLLPGFSLVCLPFLLPANHSRAHASPSLW 89
SPG R +SGP + SPR PP + PHL AH+ PSLW
Sbjct: 421 SPGVLVRC--ASGPPPN-SPRPGPPPSTSSPHLT------------------AHSEPSLW 459
Query: 90 GP 91
P
Sbjct: 460 NP 461
>gi|148612882 cat eye syndrome chromosome region, candidate 2 [Homo
sapiens]
Length = 1484
Score = 30.4 bits (67), Expect = 2.2
Identities = 30/100 (30%), Positives = 39/100 (39%), Gaps = 23/100 (23%)
Query: 27 PCRSPGARRRAFRSSGPQSSLSPRGKL-------------PPGLAQPHLLPG----FSLV 69
PC S G + SSG + L PRG+ P P L G F +
Sbjct: 1083 PCGSEG---KGLGSSGSEKLLCPRGRTLQETMPCTGQNAATPPSTDPGLTGGTVSQFPPL 1139
Query: 70 CLPFL-LPANHSRAHASPSLWGPGPIKPG--PRTHQTKAP 106
+P L P + + H SP L G GP+ G P +H P
Sbjct: 1140 YMPGLEYPNSAAHYHISPGLQGVGPVMGGKSPASHPQHFP 1179
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.134 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,183,270
Number of Sequences: 37866
Number of extensions: 834106
Number of successful extensions: 2607
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 2572
Number of HSP's gapped (non-prelim): 94
length of query: 319
length of database: 18,247,518
effective HSP length: 102
effective length of query: 217
effective length of database: 14,385,186
effective search space: 3121585362
effective search space used: 3121585362
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.