Guide to the Human Genome
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Name: LOC100291148 Sequence: fasta or formatted (230aa) NCBI GI: 239748958
Description:

PREDICTED: hypothetical protein XP_002346866

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.4         24           2
 C cysteine            3.9          9           1
 D aspartate           1.3          3           1
 E glutamate           3.0          7           2
 F phenylalanine       6.5         15           1
 G glycine            11.3         26           2
 H histidine           2.6          6           1
 I isoleucine          1.7          4           1
 K lysine              3.5          8           1
 L leucine            10.0         23           3
 M methionine          0.4          1           1
 N asparagine          1.3          3           1
 P proline            11.3         26           2
 Q glutamine           2.2          5           1
 R arginine           10.9         25           2
 S serine             10.4         24           2
 T threonine           3.0          7           1
 V valine              4.3         10           1
 W tryptophan          0.9          2           1
 Y tyrosine            0.9          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346866 
LOC100292991          0.996   PREDICTED: hypothetical protein 
MAP3K6                0.029   mitogen-activated protein kinase kinase kinase 6 [Ho...
HCN2                  0.020   hyperpolarization activated cyclic nucleotide-gated...
LOC100131455          0.020   PREDICTED: hypothetical protein 
LOC100131455          0.020   PREDICTED: hypothetical protein 
LOC100131455          0.020   PREDICTED: hypothetical protein 
LOC645321             0.020   PREDICTED: hypothetical protein 
AHCYL2                0.018   S-adenosylhomocysteine hydrolase-like 2 isoform b [...
AHCYL2                0.018   S-adenosylhomocysteine hydrolase-like 2 isoform a [H...
PPRC1                 0.018   peroxisome proliferator-activated receptor gamma, co...
ZNF48                 0.018   zinc finger protein 48 
ARHGEF15              0.018   Rho guanine exchange factor 15 
NFATC4                0.018   nuclear factor of activated T-cells, cytoplasmic, c...
IRS2                  0.018   insulin receptor substrate 2 
PRR19                 0.015   proline rich 19 
SAMD1                 0.015   sterile alpha motif domain containing 1 
LOC100292324          0.015   PREDICTED: hypothetical protein 
LOC100293694          0.015   PREDICTED: hypothetical protein 
LOC100291333          0.015   PREDICTED: hypothetical protein XP_002347591 
LOC100287849          0.015   PREDICTED: hypothetical protein XP_002343395 
LOC100134017          0.015   PREDICTED: hypothetical protein 
LOC100128370          0.015   PREDICTED: hypothetical protein 
LOC100128370          0.015   PREDICTED: hypothetical protein 
CCDC120               0.013   coiled-coil domain containing 120 isoform 3 
CCDC120               0.013   coiled-coil domain containing 120 isoform 4 
CCDC120               0.013   coiled-coil domain containing 120 isoform 2 
CCDC120               0.013   coiled-coil domain containing 120 isoform 1 
MAP3K12               0.013   mitogen-activated protein kinase kinase kinase 12 [H...
LOC100128398          0.013   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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