Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100292991 Sequence: fasta or formatted (230aa) NCBI GI: 239754405
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.4         24           2
 C cysteine            3.9          9           1
 D aspartate           1.3          3           1
 E glutamate           3.0          7           2
 F phenylalanine       6.5         15           1
 G glycine            11.3         26           2
 H histidine           2.6          6           1
 I isoleucine          1.7          4           1
 K lysine              3.5          8           1
 L leucine            10.0         23           3
 M methionine          0.4          1           1
 N asparagine          1.3          3           1
 P proline            11.7         27           2
 Q glutamine           2.2          5           1
 R arginine           10.4         24           2
 S serine             10.4         24           2
 T threonine           3.0          7           1
 V valine              4.3         10           1
 W tryptophan          0.9          2           1
 Y tyrosine            0.9          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100291148          0.993   PREDICTED: hypothetical protein XP_002346866 
MAP3K6                0.029   mitogen-activated protein kinase kinase kinase 6 [Ho...
LOC645321             0.022   PREDICTED: hypothetical protein 
HCN2                  0.020   hyperpolarization activated cyclic nucleotide-gated...
LOC390595             0.020   PREDICTED: similar to ubiquitin-associated protein ...
LOC100131455          0.020   PREDICTED: hypothetical protein 
LOC645321             0.020   PREDICTED: hypothetical protein 
LOC390595             0.020   PREDICTED: similar to ubiquitin-associated protein ...
LOC100131455          0.020   PREDICTED: hypothetical protein 
LOC645321             0.020   PREDICTED: hypothetical protein 
LOC390595             0.020   PREDICTED: hypothetical protein 
LOC100131455          0.020   PREDICTED: hypothetical protein 
CEBPD                 0.020   CCAAT/enhancer binding protein delta 
MEGF9                 0.020   multiple EGF-like-domains 9 
AHCYL2                0.018   S-adenosylhomocysteine hydrolase-like 2 isoform b [...
AHCYL2                0.018   S-adenosylhomocysteine hydrolase-like 2 isoform a [H...
PPRC1                 0.018   peroxisome proliferator-activated receptor gamma, co...
ZNF48                 0.018   zinc finger protein 48 
MYO15A                0.018   myosin XV 
LOC100132062          0.018   PREDICTED: hypothetical protein 
ARHGEF15              0.018   Rho guanine exchange factor 15 
MAPK1IP1L             0.018   MAPK-interacting and spindle-stabilizing protein [Ho...
IRS2                  0.018   insulin receptor substrate 2 
LOC100131102          0.015   PREDICTED: hypothetical protein 
LOC100131102          0.015   PREDICTED: hypothetical protein 
C17orf96              0.015   hypothetical protein LOC100170841 
PRR19                 0.015   proline rich 19 
SAMD1                 0.015   sterile alpha motif domain containing 1 
NFATC4                0.015   nuclear factor of activated T-cells, cytoplasmic, c...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press