Guide to the Human Genome
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Name: FAM189B Sequence: fasta or formatted (572aa) NCBI GI: 38146118
Description:

hypothetical protein LOC10712 isoform b

Not currently referenced in the text

Other entries for this name:
alt prot {668aa} hypothetical protein LOC10712 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         38           3
 C cysteine            3.7         21           2
 D aspartate           4.2         24           1
 E glutamate           4.0         23           3
 F phenylalanine       2.4         14           1
 G glycine             8.0         46           3
 H histidine           2.4         14           1
 I isoleucine          2.6         15           2
 K lysine              1.4          8           1
 L leucine            12.2         70           3
 M methionine          1.2          7           2
 N asparagine          0.5          3           1
 P proline            12.4         71           4
 Q glutamine           1.9         11           1
 R arginine            8.9         51           3
 S serine             13.8         79           5
 T threonine           5.6         32           3
 V valine              5.1         29           2
 W tryptophan          1.0          6           1
 Y tyrosine            1.7         10           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC10712 isoform b 
FAM189B               0.874   hypothetical protein LOC10712 isoform a 
FAM189A1              0.091   hypothetical protein LOC23359 
FAM189A2              0.029   chromosome 9 open reading frame 61 
FAM189A2              0.029   chromosome 9 open reading frame 61 
FLJ22184              0.017   PREDICTED: hypothetical protein FLJ22184 
SAMD1                 0.017   sterile alpha motif domain containing 1 
KIAA1522              0.017   hypothetical protein LOC57648 
SRRM2                 0.017   splicing coactivator subunit SRm300 
NACA                  0.017   nascent polypeptide-associated complex alpha subuni...
CBLL1                 0.016   Cas-Br-M (murine) ecotropic retroviral transforming...
TNK2                  0.016   tyrosine kinase, non-receptor, 2 isoform 1 
TNK2                  0.016   tyrosine kinase, non-receptor, 2 isoform 2 
SFRS15                0.016   splicing factor, arginine/serine-rich 15 isoform 3 ...
ADAMTS19              0.015   ADAM metallopeptidase with thrombospondin type 1 mo...
LOC388279             0.014   PREDICTED: hypothetical protein 
LMTK3                 0.014   lemur tyrosine kinase 3 
PRR12                 0.014   proline rich 12 
INPPL1                0.014   inositol polyphosphate phosphatase-like 1 
MLL2                  0.013   myeloid/lymphoid or mixed-lineage leukemia 2 
ATN1                  0.013   atrophin-1 
ATN1                  0.013   atrophin-1 
SYN1                  0.013   synapsin I isoform Ia 
SYN1                  0.013   synapsin I isoform Ib 
LOC100292845          0.013   PREDICTED: hypothetical protein 
LOC100289230          0.013   PREDICTED: hypothetical protein XP_002342600 
MINK1                 0.013   misshapen/NIK-related kinase isoform 2 
SFRS15                0.013   splicing factor, arginine/serine-rich 15 isoform 2 ...
SFRS15                0.013   splicing factor, arginine/serine-rich 15 isoform 1 [...
PRRT1                 0.013   NG5 protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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