TREX1 36013

Name: TREX1	Sequence: fasta or formatted (369aa)		NCBI GI: 7705353
Description: three prime repair exonuclease 1 isoform a		Referenced in: DNases, Recombination, and DNA Repair RNases and RNA Stability
Other entries for this name: alt prot [314aa] three prime repair exonuclease 1 isoform b
Composition: Amino acid Percentage Count Longest homopolymer A alanine 10.8 40 2 C cysteine 3.0 11 1 D aspartate 3.5 13 2 E glutamate 3.3 12 1 F phenylalanine 2.4 9 2 G glycine 8.1 30 1 H histidine 2.2 8 1 I isoleucine 2.4 9 1 K lysine 2.2 8 1 L leucine 13.6 50 3 M methionine 1.9 7 1 N asparagine 1.1 4 1 P proline 12.5 46 4 Q glutamine 3.5 13 1 R arginine 6.2 23 2 S serine 7.9 29 2 T threonine 8.4 31 3 V valine 4.3 16 2 W tryptophan 0.8 3 1 Y tyrosine 1.9 7 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 three prime repair exonuclease 1 isoform a TREX1 0.836 three prime repair exonuclease 1 isoform b TREX2 0.208 three prime repair exonuclease 2 FLJ22184 0.023 PREDICTED: hypothetical protein FLJ22184 FLJ22184 0.023 PREDICTED: hypothetical protein LOC80164 TULP4 0.023 tubby like protein 4 isoform 1 FLJ22184 0.022 PREDICTED: hypothetical protein FLJ22184 CBLL1 0.022 Cas-Br-M (murine) ecotropic retroviral transforming... WASF2 0.021 WAS protein family, member 2 MUC2 0.019 mucin 2 precursor PELP1 0.018 proline, glutamic acid and leucine rich protein 1 [... MYPOP 0.018 Myb protein P42POP INF2 0.018 inverted formin 2 isoform 2 INF2 0.018 inverted formin 2 isoform 1 LOC645602 0.016 PREDICTED: hypothetical protein LOC645602 0.016 PREDICTED: hypothetical protein LOC645602 0.016 PREDICTED: hypothetical protein RAPH1 0.016 Ras association and pleckstrin homology domains 1 is... WIPF3 0.016 WAS/WASL interacting protein family, member 3 [Homo... HGC6.3 0.016 hypothetical protein LOC100128124 FMN1 0.015 formin 1 ASTN2 0.015 astrotactin 2 isoform c ASTN2 0.015 astrotactin 2 isoform b ASTN2 0.015 astrotactin 2 isoform a TNK2 0.015 tyrosine kinase, non-receptor, 2 isoform 1 TNK2 0.015 tyrosine kinase, non-receptor, 2 isoform 2 KIAA1522 0.015 hypothetical protein LOC57648 RBM33 0.015 RNA binding motif protein 33 SF1 0.015 splicing factor 1 isoform 1 SETD1B 0.015 SET domain containing 1B Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.