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Search of human proteins with 118766347
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|118766347 zinc finger CCCH-type domain containing 6 [Homo
sapiens]
(1189 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|118766347 zinc finger CCCH-type domain containing 6 [Homo sap... 2467 0.0
gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens] 578 e-164
gi|217416362 zinc finger CCCH-type containing 8 [Homo sapiens] 258 2e-68
gi|32880199 makorin ring finger protein 2 [Homo sapiens] 60 2e-08
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 58 5e-08
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 58 6e-08
gi|223468622 makorin ring finger protein 1 isoform 2 [Homo sapiens] 57 8e-08
gi|223468620 makorin ring finger protein 1 isoform 1 [Homo sapiens] 57 8e-08
gi|125987603 cleavage and polyadenylation specific factor 4, 30k... 57 1e-07
gi|5729939 cleavage and polyadenylation specific factor 4, 30kDa... 57 1e-07
gi|146134388 YLP motif containing 1 [Homo sapiens] 57 1e-07
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens] 56 2e-07
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 56 2e-07
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 56 2e-07
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 56 2e-07
gi|193788659 cleavage and polyadenylation specific factor 4-like... 55 4e-07
gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens] 55 5e-07
gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens] 55 5e-07
gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens] 54 7e-07
gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens] 54 7e-07
gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens] 54 7e-07
gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens] 54 7e-07
gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens] 54 7e-07
gi|22027593 alpha 1 type XIII collagen isoform 11 [Homo sapiens] 54 7e-07
gi|22027591 alpha 1 type XIII collagen isoform 10 [Homo sapiens] 54 7e-07
gi|22027589 alpha 1 type XIII collagen isoform 9 [Homo sapiens] 54 7e-07
gi|22027577 alpha 1 type XIII collagen isoform 5 [Homo sapiens] 54 7e-07
gi|22027574 alpha 1 type XIII collagen isoform 4 [Homo sapiens] 54 7e-07
gi|22027571 alpha 1 type XIII collagen isoform 3 [Homo sapiens] 54 7e-07
gi|22027568 alpha 1 type XIII collagen isoform 2 [Homo sapiens] 54 7e-07
>gi|118766347 zinc finger CCCH-type domain containing 6 [Homo sapiens]
Length = 1189
Score = 2467 bits (6395), Expect = 0.0
Identities = 1189/1189 (100%), Positives = 1189/1189 (100%)
Query: 1 MTDSEHAGHDREDGELEDGEIDDAGFEEIQEKEAKENEKQKSEKAYRKSRKKHKKEREKK 60
MTDSEHAGHDREDGELEDGEIDDAGFEEIQEKEAKENEKQKSEKAYRKSRKKHKKEREKK
Sbjct: 1 MTDSEHAGHDREDGELEDGEIDDAGFEEIQEKEAKENEKQKSEKAYRKSRKKHKKEREKK 60
Query: 61 KSKRRKREKHKHNSPSSDDSSDYSLDSDVEHTESSHKKRTGFYRDYDIPFTQRGHISGSY 120
KSKRRKREKHKHNSPSSDDSSDYSLDSDVEHTESSHKKRTGFYRDYDIPFTQRGHISGSY
Sbjct: 61 KSKRRKREKHKHNSPSSDDSSDYSLDSDVEHTESSHKKRTGFYRDYDIPFTQRGHISGSY 120
Query: 121 ITSKKGQHNKKFKSKEYDEYSTYSDDNFGNYSDDNFGNYGQETEEDFANQLKQYRQAKET 180
ITSKKGQHNKKFKSKEYDEYSTYSDDNFGNYSDDNFGNYGQETEEDFANQLKQYRQAKET
Sbjct: 121 ITSKKGQHNKKFKSKEYDEYSTYSDDNFGNYSDDNFGNYGQETEEDFANQLKQYRQAKET 180
Query: 181 SNIALGSSFSKESGKKQRMKGVQQGIEQRVKSFNVGRGRGLPKKIKRKERGGRTNKGPNV 240
SNIALGSSFSKESGKKQRMKGVQQGIEQRVKSFNVGRGRGLPKKIKRKERGGRTNKGPNV
Sbjct: 181 SNIALGSSFSKESGKKQRMKGVQQGIEQRVKSFNVGRGRGLPKKIKRKERGGRTNKGPNV 240
Query: 241 FSVSDDFQEYNKPGKKWKVMTQEFINQHTVEHKGKQICKYFLEGRCIKGDQCKFDHDAEL 300
FSVSDDFQEYNKPGKKWKVMTQEFINQHTVEHKGKQICKYFLEGRCIKGDQCKFDHDAEL
Sbjct: 241 FSVSDDFQEYNKPGKKWKVMTQEFINQHTVEHKGKQICKYFLEGRCIKGDQCKFDHDAEL 300
Query: 301 EKRKEICKFYLQGYCTKGENCIYMHNEFPCKFYHSGAKCYQGDNCKFSHDDLTKETKKLL 360
EKRKEICKFYLQGYCTKGENCIYMHNEFPCKFYHSGAKCYQGDNCKFSHDDLTKETKKLL
Sbjct: 301 EKRKEICKFYLQGYCTKGENCIYMHNEFPCKFYHSGAKCYQGDNCKFSHDDLTKETKKLL 360
Query: 361 DKVLNTDEELINEDERELEELRKRGITPLPKPPPGVGLLPTPPEHFPFSDPEDDFQTDFS 420
DKVLNTDEELINEDERELEELRKRGITPLPKPPPGVGLLPTPPEHFPFSDPEDDFQTDFS
Sbjct: 361 DKVLNTDEELINEDERELEELRKRGITPLPKPPPGVGLLPTPPEHFPFSDPEDDFQTDFS 420
Query: 421 DDFRKIPSLFEIVVKPTVDLAHKIGRKPPAFYTSASPPGPQFQGSSPHPQHIYSSGSSPG 480
DDFRKIPSLFEIVVKPTVDLAHKIGRKPPAFYTSASPPGPQFQGSSPHPQHIYSSGSSPG
Sbjct: 421 DDFRKIPSLFEIVVKPTVDLAHKIGRKPPAFYTSASPPGPQFQGSSPHPQHIYSSGSSPG 480
Query: 481 PGPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSPPLPPGPPEIVGPQNQAGVLVQPDT 540
PGPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSPPLPPGPPEIVGPQNQAGVLVQPDT
Sbjct: 481 PGPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSPPLPPGPPEIVGPQNQAGVLVQPDT 540
Query: 541 SLTPPSMGGAYHSPGFPGHVMKVPRENHCSPGSSYQQSPGEMQLNTNYESLQNPAEFYDN 600
SLTPPSMGGAYHSPGFPGHVMKVPRENHCSPGSSYQQSPGEMQLNTNYESLQNPAEFYDN
Sbjct: 541 SLTPPSMGGAYHSPGFPGHVMKVPRENHCSPGSSYQQSPGEMQLNTNYESLQNPAEFYDN 600
Query: 601 YYAQHSIHNFQPPNNSGDGMWHGEFAQQQPPVVQDSPNHGSGSDGSSTRTGHGPLPVPGL 660
YYAQHSIHNFQPPNNSGDGMWHGEFAQQQPPVVQDSPNHGSGSDGSSTRTGHGPLPVPGL
Sbjct: 601 YYAQHSIHNFQPPNNSGDGMWHGEFAQQQPPVVQDSPNHGSGSDGSSTRTGHGPLPVPGL 660
Query: 661 LPAVQRALFVRLTQRYQEDEEQTSTQPHRAPSKEEDDTVNWYSSSEEEEGSSVKSILKTL 720
LPAVQRALFVRLTQRYQEDEEQTSTQPHRAPSKEEDDTVNWYSSSEEEEGSSVKSILKTL
Sbjct: 661 LPAVQRALFVRLTQRYQEDEEQTSTQPHRAPSKEEDDTVNWYSSSEEEEGSSVKSILKTL 720
Query: 721 QKQTETLRNQQQPSTELSTPTDPRLAKEKSKGNQVVDPRLRTIPRQDIRKPSESAPLDLR 780
QKQTETLRNQQQPSTELSTPTDPRLAKEKSKGNQVVDPRLRTIPRQDIRKPSESAPLDLR
Sbjct: 721 QKQTETLRNQQQPSTELSTPTDPRLAKEKSKGNQVVDPRLRTIPRQDIRKPSESAPLDLR 780
Query: 781 LAWDPRKLRGNGSGHIGSSVGGAKFDLHHANAGTNVKHKRGDDDDEDTERELREKAFLIP 840
LAWDPRKLRGNGSGHIGSSVGGAKFDLHHANAGTNVKHKRGDDDDEDTERELREKAFLIP
Sbjct: 781 LAWDPRKLRGNGSGHIGSSVGGAKFDLHHANAGTNVKHKRGDDDDEDTERELREKAFLIP 840
Query: 841 LDASPGIMLQDPRSQLRQFSHIKMDITLTKPNFAKHIVWAPEDLLPVPLPKPDPVSSINL 900
LDASPGIMLQDPRSQLRQFSHIKMDITLTKPNFAKHIVWAPEDLLPVPLPKPDPVSSINL
Sbjct: 841 LDASPGIMLQDPRSQLRQFSHIKMDITLTKPNFAKHIVWAPEDLLPVPLPKPDPVSSINL 900
Query: 901 PLPPLIADQRLNRLWNTKSDLHQNTVSIDPKLAAKAKINTTNREGYLEQFGDSHGSGAKL 960
PLPPLIADQRLNRLWNTKSDLHQNTVSIDPKLAAKAKINTTNREGYLEQFGDSHGSGAKL
Sbjct: 901 PLPPLIADQRLNRLWNTKSDLHQNTVSIDPKLAAKAKINTTNREGYLEQFGDSHGSGAKL 960
Query: 961 GDPRLQKNFDPRLHRLPNTESHQVVMKDSHASKGAPHLPRSNPGSSQPSGAGTSNSGSGA 1020
GDPRLQKNFDPRLHRLPNTESHQVVMKDSHASKGAPHLPRSNPGSSQPSGAGTSNSGSGA
Sbjct: 961 GDPRLQKNFDPRLHRLPNTESHQVVMKDSHASKGAPHLPRSNPGSSQPSGAGTSNSGSGA 1020
Query: 1021 LPPYAPKLSSSAGLPLGTSTSVLSGISLYDPRDHGSSSTSELATASSGENSKNQKKSGGL 1080
LPPYAPKLSSSAGLPLGTSTSVLSGISLYDPRDHGSSSTSELATASSGENSKNQKKSGGL
Sbjct: 1021 LPPYAPKLSSSAGLPLGTSTSVLSGISLYDPRDHGSSSTSELATASSGENSKNQKKSGGL 1080
Query: 1081 KSSDKTEPSPGEAILPQKPSPNVGVTLEGPADPQADVPRSSGKVQVPAVHSLPVQALTGL 1140
KSSDKTEPSPGEAILPQKPSPNVGVTLEGPADPQADVPRSSGKVQVPAVHSLPVQALTGL
Sbjct: 1081 KSSDKTEPSPGEAILPQKPSPNVGVTLEGPADPQADVPRSSGKVQVPAVHSLPVQALTGL 1140
Query: 1141 IRPQYSDPRQARQPGQGSPTPDNDPGRETDDKSLKEVFKTFDPTASPFC 1189
IRPQYSDPRQARQPGQGSPTPDNDPGRETDDKSLKEVFKTFDPTASPFC
Sbjct: 1141 IRPQYSDPRQARQPGQGSPTPDNDPGRETDDKSLKEVFKTFDPTASPFC 1189
>gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens]
Length = 1303
Score = 578 bits (1489), Expect = e-164
Identities = 450/1366 (32%), Positives = 618/1366 (45%), Gaps = 302/1366 (22%)
Query: 10 DREDGELEDGEIDDAGFEEIQ-----------EKEAKENEKQKSEKAYRKSRKKHKKERE 58
DREDGELE+GE++D G EE Q EK K + EK++R+ ++K KKERE
Sbjct: 53 DREDGELEEGELEDDGAEETQDTSGGPERSRKEKGEKHHSDSDEEKSHRRLKRKRKKERE 112
Query: 59 KKK--SKRRKREKHKHNSPSSDDSSDYSLDSDVEHTESSHKKRTGFYRDYDIPF------ 110
K+K SK+R++ KHK ++ SSDD SD+S DSD +E H+K YR+Y P+
Sbjct: 113 KEKRRSKKRRKSKHKRHASSSDDFSDFSDDSDFSPSEKGHRK----YREYSPPYAPSHQQ 168
Query: 111 ------TQRGHISGSYITSKKGQHNKKFKSKEYDEYSTYSDDNFGNYSDDNF-------- 156
T + S + SK + +++++Y EY +++ G D+F
Sbjct: 169 YPPSHATPLPKKAYSKMDSKSYGMYEDYENEQYGEYEGDEEEDMGKEDYDDFTKELNQYR 228
Query: 157 -----------------------------------GNYGQ----------ETEEDFANQL 171
G+ G+ E EEDF +
Sbjct: 229 RAKEGSSRGRGSRGRGRGYRGRGSRGGSRGRGMGRGSRGRGRGSMGGDHPEDEEDFYEEE 288
Query: 172 KQYRQAKETSNIALGSSFSKESGKKQRMKGVQQGIEQRVKSFNVGRGRGLPKKIKRKERG 231
Y +++E +SKE + +R K + R + + GRGRG + K RG
Sbjct: 289 MDYGESEEPMGDDDYDEYSKELNQYRRSK------DSRGRGLSRGRGRGSRGRGKGMGRG 342
Query: 232 ---GRTNKGPNVFSVSDDFQEYNKP-----GKKWKVMTQEFINQHTVEHKGKQICKYFLE 283
G + G N ++DD Y++ G ++ + +Q + + KGK ICKYF+E
Sbjct: 343 RGRGGSRGGMNKGGMNDDEDFYDEDMGDGGGGSYRSRDHDKPHQQS-DKKGKVICKYFVE 401
Query: 284 GRCIKGDQCKFDHDAELEKRKEICKFYLQGYCTKGENCIYMHNEFPCKFYHSGAKCYQGD 343
GRC GD C F HD EL K++E+CKFY+ G+C + ENC YMH +FPCK YH+ C GD
Sbjct: 402 GRCTWGDHCNFSHDIELPKKRELCKFYITGFCARAENCPYMHGDFPCKLYHTTGNCINGD 461
Query: 344 NCKFSHDDLTKETKKLLDKVLNTDEELINEDERELEELRKRGITPLPKPPPGVGLLPTPP 403
+C FSHD LT+ET++LLDK+L D E EDE+E+EEL+K+GI PLPKPPPGVGLLPTPP
Sbjct: 462 DCMFSHDPLTEETRELLDKMLADDAEAGAEDEKEVEELKKQGINPLPKPPPGVGLLPTPP 521
Query: 404 EH-----------------------------------FPFSDPEDDFQTDFSDDF-RKIP 427
P +P Q D + +KIP
Sbjct: 522 RPPGPQAPTSPNGRPMQGGPPPPPPPPPPPPGPPQMPMPVHEPLSPQQLQQQDMYNKKIP 581
Query: 428 SLFEIVVKPTVDLAHKIGRKPPAFYTSASPPGPQFQGSSPHPQHIYSSGSSPGPGPNMSQ 487
SLFEIVV+PT LA K+G + P PPGP GPGPNM
Sbjct: 582 SLFEIVVRPTGQLAEKLGVRFPG---PGGPPGPM------------------GPGPNM-- 618
Query: 488 GHSSPVMHPGSPGHHPCAGPPGLP---------VPQSPPLPPGPPEIVGPQNQAGVLVQP 538
G P+ P P HP P P +P P + PGPP +GP
Sbjct: 619 GPPGPMGGPMHPDMHPDMHPDMHPDMHADMHADMPMGPGMNPGPP--MGPGG-------- 668
Query: 539 DTSLTPPSMGGAYHSPGFPGHVMKVPRENHCSPGSSYQQSPGEMQLNTNYESLQNPAEFY 598
+ P G + HS G + +P + QQ EM+ L AE Y
Sbjct: 669 -PPMMPYGPGDSPHS----GMMPPIPPAQNFYENFYQQQEGMEME-----PGLLGDAEDY 718
Query: 599 DNYYAQHSIHNFQPPNNSGDGMWHGEFAQQQPPVVQDSPNHGSGSDGSSTRTGHGPLPVP 658
+Y + P G+ ++ + P+ DS G + G G VP
Sbjct: 719 GHYE--------ELPGEPGEHLF------PEHPLEPDS--FSEGGPPGRPKPGAG---VP 759
Query: 659 GLLPAVQRALFVRLTQRYQEDEEQT---STQPHRAPSKEEDDTVNWYSSSEEEEGSSVKS 715
LP+ QRAL++R+ Q+ QE+EE+ + + EE DT NWYSS E+E GSSV S
Sbjct: 760 DFLPSAQRALYLRIQQKQQEEEERARRLAESSKQDRENEEGDTGNWYSSDEDEGGSSVTS 819
Query: 716 ILKTLQKQTETLRNQQQPSTELSTPTDPRLAKEKSKGNQVVDPRLRTIPR-------QDI 768
ILKTL++QT + S DPRL K G+++ DPRL PR
Sbjct: 820 ILKTLRQQTSSRPPASVGELSSSGLGDPRLQKGHPTGSRLADPRLSRDPRLTRHVEASGG 879
Query: 769 RKPSESAPLDLRLAWDPRKLRGNGSGHIGSSVGGAKFDLHHANAGTNVKHKRG--DDDDE 826
P +S P D RLA + GS LH + G + G ++E
Sbjct: 880 SGPGDSGPSDPRLARALPTSKPEGS-------------LHSSPVGPSSSKGSGPPPTEEE 926
Query: 827 DTERELREKAFLIPLDASPGIMLQDPRSQLRQFSHIKMDITLTKPNFAKHIVWAPEDLLP 886
+ ER LREKA IPLD PG L+DPRSQL+QFSHIK D+TL+KP+FA+ ++W PEDL+P
Sbjct: 927 EGERALREKAVNIPLDPLPGHPLRDPRSQLQQFSHIKKDVTLSKPSFARTVLWNPEDLIP 986
Query: 887 VPLPKPDPVSSINLPLPPLIADQRLNRLWNTKSDLHQNTVSIDPKLAAKAKINTTNREGY 946
+P+PK D V P+P + Q+ ++DP+L A N
Sbjct: 987 LPIPKQDAVP----PVPAAL----------------QSMPTLDPRLHRAATAGPPNARQR 1026
Query: 947 LEQFGDSHGSGAKLGDPRL--------------------QKNFDPRLHRLPNTESHQVVM 986
DS GA L D L K DPR+ + P Q
Sbjct: 1027 PGASTDSSTQGANLPDFELLSRILKTVNATGSSAAPGSSDKPSDPRVRKAPTDPRLQKPT 1086
Query: 987 KDSHASKGAPHLPRSNPGSSQPSGAGTSNSGSGALPPYAPKLSSSAGLPL---GTSTSVL 1043
+ +S+ A P P P+ + + ++ A PY P++ ++ GL G +SVL
Sbjct: 1087 DSTASSRAAKPGPAEAP---SPTASPSGDASPPATAPYDPRVLAAGGLGQGGGGGQSSVL 1143
Query: 1044 SGISLYDPRDHGSSSTSELATASSGENSKNQKKSGGLKSSDKTEPS-PGEAILPQKPSPN 1102
SGISLYDPR + + A +G K + +G +S EP ++ L Q +
Sbjct: 1144 SGISLYDPRTPNAGGKATEPAADTGAQPKGAEGNGKSSASKAKEPPFVRKSALEQPETGK 1203
Query: 1103 VGVTLEGPAD---------PQA--------DVPRSSGKVQVPAVHSLPVQALTGLIRPQY 1145
G P D P+A P G P VH+LPV L G +
Sbjct: 1204 AGADGGTPTDRYNSYNRPRPKAAAAPAATTATPPPEGAPPQPGVHNLPVPTLFGTV---- 1259
Query: 1146 SDPRQARQPGQGSPTPDNDPGR--ETDDKSLKEVFKTFDPTASPFC 1189
+Q + G GSP N P R E D SLK+VFK FDPTASPFC
Sbjct: 1260 ---KQTPKTGSGSPFAGNSPAREGEQDAASLKDVFKGFDPTASPFC 1302
>gi|217416362 zinc finger CCCH-type containing 8 [Homo sapiens]
Length = 291
Score = 258 bits (660), Expect = 2e-68
Identities = 143/294 (48%), Positives = 191/294 (64%), Gaps = 28/294 (9%)
Query: 77 SDDSSDYSLDSDVEHTESSHKKRTGFYRDYDIPFTQRGHISGSYITSKKGQHNKKFKSKE 136
SD+ D +D++VE T+ K IP R S I+ K H K +SK+
Sbjct: 22 SDERIDDEIDTEVEETQEEKIK----LECEQIPKKFRH----SAISPKSSLHRKS-RSKD 72
Query: 137 YDEYSTYSDDNFGNYSDDNFGNYGQETEEDFANQLKQYRQAKETSNIALGSSFSKESGKK 196
YD YSD++ + QE+E++FA +L+QY QA+E +N A +ES KK
Sbjct: 73 YD---VYSDNDICS----------QESEDNFAKELQQYIQAREMANAAQ----PEESTKK 115
Query: 197 QRMKGVQQGIEQRVKSFNVGRGRGLPKKIKRKERGGRTNKGPNVFSVSDDFQEYN-KPGK 255
+ +K Q +Q+ K+ G G KK+KRK G NKG N + QE + KP +
Sbjct: 116 EGVKDTPQAAKQKNKNLKAGHKNGKQKKMKRKWPGPG-NKGSNALLRNSGSQEEDGKPKE 174
Query: 256 KWKVMTQEFINQHTVEHKGKQICKYFLEGRCIKGDQCKFDHDAELEKRKEICKFYLQGYC 315
K + ++Q FINQHTVE KGKQICKYFLE +CIKGDQCKFDHDAE+EK+KE+CKFY+QGYC
Sbjct: 175 KQQHLSQAFINQHTVERKGKQICKYFLERKCIKGDQCKFDHDAEIEKKKEMCKFYVQGYC 234
Query: 316 TKGENCIYMHNEFPCKFYHSGAKCYQGDNCKFSHDDLTKETKKLLDKVLNTDEE 369
T+GENC+Y+HNE+PCKFYH+G KCYQG+ CKFSH LT ET++LL KVL+T+++
Sbjct: 235 TRGENCLYLHNEYPCKFYHTGTKCYQGEYCKFSHAPLTPETQELLAKVLDTEKK 288
>gi|32880199 makorin ring finger protein 2 [Homo sapiens]
Length = 416
Score = 59.7 bits (143), Expect = 2e-08
Identities = 26/52 (50%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 275 KQI-CKYFLEGRCIKGDQCKFDHDAELEKRKEICKFYLQGYCTKGENCIYMH 325
KQI C+YF+ G C +G QC F HD K ICK+Y +GYC G C Y H
Sbjct: 4 KQITCRYFMHGVCREGSQCLFSHDLANSKPSTICKYYQKGYCAYGTRCRYDH 55
Score = 39.7 bits (91), Expect = 0.017
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
Query: 307 CKFYLQGYCTKGENCIYMH---NEFP---CKFYHSGAKCYQGDNCKFSH 349
C++++ G C +G C++ H N P CK+Y G C G C++ H
Sbjct: 8 CRYFMHGVCREGSQCLFSHDLANSKPSTICKYYQKG-YCAYGTRCRYDH 55
Score = 32.7 bits (73), Expect = 2.1
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 273 KGKQICKYFLEGRCIKGDQCKFDH 296
K ICKY+ +G C G +C++DH
Sbjct: 32 KPSTICKYYQKGYCAYGTRCRYDH 55
>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
Length = 1336
Score = 58.2 bits (139), Expect = 5e-08
Identities = 84/315 (26%), Positives = 102/315 (32%), Gaps = 58/315 (18%)
Query: 387 TPL--PKPPPGVGLLPTPPEHFPFSDPEDDFQTDFSD--------DFRKIPSLFEIVVKP 436
TPL P+P PG G + P+ F P + + FR P + + P
Sbjct: 580 TPLLGPQPFPGQGPMSQIPQGFQQPHPSQQMPMNMAQMGPPGPQGQFR--PPGPQGQMGP 637
Query: 437 TVDLAHKIGRKPPAFYTSASPPGPQF-----------QGSSPHPQHIYSSGSSPGPGPNM 485
H+ G P F P GP QG HP G PGP
Sbjct: 638 QGPPLHQGGGGPQGFMGPQGPQGPPQGLPRPQDMHGPQGMQRHPGPHGPLGPQGPPGPQG 697
Query: 486 S---QGHSSPVMHPGSPGHHPCAGPPGLPVPQSPPLPPGPPEIVGPQNQAGVLVQPDTSL 542
S QGH P PG GH GP G P PQ P GPP G Q G
Sbjct: 698 SSGPQGHMGPQGPPGPQGH---IGPQGPPGPQGHLGPQGPPGTQGMQGPPG--------- 745
Query: 543 TPPSMGGAYHSPGFPGHVMKVPRENHCSPGSSYQQSPGEMQLNTNYESLQNPAEFYDNYY 602
P M G H G G + S G +P MQ Q PA
Sbjct: 746 -PRGMQGPPHPHGIQGGPGSQGIQGPVSQGPLMGLNPRGMQGPPGPRENQGPAP--QGMI 802
Query: 603 AQHSIHNFQPPNNSGDGMWHGEFAQQQPPVV---QDSPNHGS---------GSDGSSTRT 650
H + P+ G + HG + P + Q P GS G GS ++
Sbjct: 803 MGHPPQEMRGPHPPGGLLGHGPQEMRGPQEIRGMQGPPPQGSMLGPPQELRGPPGSQSQQ 862
Query: 651 GH-----GPLPVPGL 660
G GP P G+
Sbjct: 863 GPPQGSLGPPPQGGM 877
Score = 47.0 bits (110), Expect = 1e-04
Identities = 66/256 (25%), Positives = 76/256 (29%), Gaps = 98/256 (38%)
Query: 448 PPAFYTSASPPGPQFQGSSPHPQHIYSSGSSPG---------------------PGPNMS 486
PP PPGP+ PHP I S G PGP +
Sbjct: 734 PPGTQGMQGPPGPRGMQGPPHPHGIQGGPGSQGIQGPVSQGPLMGLNPRGMQGPPGPREN 793
Query: 487 QGHSSPVMHPGSP--------------GHHP--CAGPPGLPVPQSPPLPPG-----PPEI 525
QG + M G P GH P GP + Q PP P G P E+
Sbjct: 794 QGPAPQGMIMGHPPQEMRGPHPPGGLLGHGPQEMRGPQEIRGMQGPP-PQGSMLGPPQEL 852
Query: 526 VGPQNQAGVLVQPDTSLTPPSMGGAYHSPGFPGHVMKVPRENHCSPGSSYQQSPGEMQLN 585
GP P SL PP GG PG G
Sbjct: 853 RGPPGSQSQQGPPQGSLGPPPQGGMQGPPGPQGQ-------------------------- 886
Query: 586 TNYESLQNPAEFYDNYYAQHSIHNFQPPNNSGDGMWHGEFAQQQPPVVQDSPNHGSGSDG 645
QNPA H Q P F QQ+ P++ D P +G
Sbjct: 887 ------QNPA---------RGPHPSQGPI---------PFQQQKTPLLGDGPRAPFNQEG 922
Query: 646 SSTRTGHGPLP-VPGL 660
ST GP P +PGL
Sbjct: 923 QST----GPPPLIPGL 934
Score = 34.3 bits (77), Expect = 0.73
Identities = 52/232 (22%), Positives = 75/232 (32%), Gaps = 34/232 (14%)
Query: 446 RKPPAFYTSASPP----GPQFQGS-----SPHPQHIYSSGSSPGPGPNMSQGHSSPVMHP 496
R PP + PP GP QG P Q + G P GP Q +P++
Sbjct: 853 RGPPGSQSQQGPPQGSLGPPPQGGMQGPPGPQGQQNPARGPHPSQGPIPFQQQKTPLLGD 912
Query: 497 GSPG----HHPCAGPPGLPVP---------QSPPLPPGPPEIVGPQNQAGVLVQPDTSLT 543
G GPP L +P + PPL PG GP G P
Sbjct: 913 GPRAPFNQEGQSTGPPPL-IPGLGQQGAQGRIPPLNPGQ----GPGPNKGDSRGPPNHHM 967
Query: 544 PPSMGGAYHSPGFPGHVMKVPRENHCSPGSSYQQSPGEMQLNTNY-ESLQNPAEFYDNYY 602
P + G P H P G + P + ++ + P +F+ +
Sbjct: 968 GPMSERRHEQSGGPEH---GPERGPFRGGQDCRGPPDRRGPHPDFPDDFSRPDDFHPDKR 1024
Query: 603 AQHSIHNFQPPNNSGDGMWHGEFAQQQPPVVQDSPNHGSGSDGSSTRTGHGP 654
H + F+ G + E ++ P P+H S+G GP
Sbjct: 1025 FGHRLREFE---GRGGPLPQEEKWRRGGPGPPFPPDHREFSEGDGRGAARGP 1073
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 57.8 bits (138), Expect = 6e-08
Identities = 46/127 (36%), Positives = 53/127 (41%), Gaps = 18/127 (14%)
Query: 448 PPAFYTSASPPGPQFQGSSPHPQHIYSSGSS-------PGP-GPNMSQGHSSPVMHPGSP 499
PP S P GPQ S + + SG + PGP GP G HPGSP
Sbjct: 137 PPGICESC-PTGPQ-NYSPQYDSYDVKSGVAVGGLAGYPGPAGPPGPPGPPGTSGHPGSP 194
Query: 500 GHHPCAGPPGLPVPQSPPLPPGPPEIVGPQNQAGVLVQP-------DTSLT-PPSMGGAY 551
G GPPG P P PPGPP +GP AG + + L PP + G
Sbjct: 195 GSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGIKGPA 254
Query: 552 HSPGFPG 558
PGFPG
Sbjct: 255 GIPGFPG 261
Score = 50.1 bits (118), Expect = 1e-05
Identities = 43/133 (32%), Positives = 50/133 (37%), Gaps = 23/133 (17%)
Query: 448 PPAFYTSASPPGPQ----------------FQGSSPHPQHIYSSGSSPGPGPNMSQGHSS 491
PP A PPGPQ F G+ P S+G+ PGP+ S G
Sbjct: 844 PPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDG 903
Query: 492 P------VMHPGSPGHHPCAGPPGLPVPQSPPLPPGPPEIVGPQNQAGVLVQPDTSLTPP 545
P PGSPG G G P + P GPP GP AG+ + PP
Sbjct: 904 PPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLA-GPP 962
Query: 546 SMGGAYHSPGFPG 558
M G SPG G
Sbjct: 963 GMPGPRGSPGPQG 975
Score = 46.2 bits (108), Expect = 2e-04
Identities = 39/115 (33%), Positives = 44/115 (38%), Gaps = 19/115 (16%)
Query: 456 SPPGPQFQGSSPHPQHIYSSGSSPGPGPNMSQGH------SSPVMHPGSPGHHPCAGPPG 509
SP GP G P SG PGP+ +G P + G+PG + G PG
Sbjct: 541 SPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPG 600
Query: 510 LPVPQSPP------LPPGPPEIVGPQNQAGVLVQPDTSLTPPSMGGAYHSPGFPG 558
P PQ PP P GPP GP G DT PP G PG G
Sbjct: 601 GPGPQGPPGKNGETGPQGPPGPTGPGGDKG-----DTG--PPGPQGLQGLPGTGG 648
Score = 45.8 bits (107), Expect = 2e-04
Identities = 39/121 (32%), Positives = 47/121 (38%), Gaps = 10/121 (8%)
Query: 446 RKPPAFYTSASP------PGPQFQGSSPHPQHIYSSGSSPGPGPNMSQGHSSPVMHPGSP 499
R P F A P GP + +P P G++ PG + G PGSP
Sbjct: 485 RGAPGFRGPAGPNGIPGEKGPAGERGAPGPAG--PRGAAGEPGRDGVPGGPGMRGMPGSP 542
Query: 500 GHHPCAGPPGLPVPQSPPLPPGPPEIVGPQNQAGVL--VQPDTSLTPPSMGGAYHSPGFP 557
G G PG P Q PGPP GP+ Q GV+ P + P G PG P
Sbjct: 543 GGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGP 602
Query: 558 G 558
G
Sbjct: 603 G 603
Score = 44.3 bits (103), Expect = 7e-04
Identities = 28/76 (36%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Query: 454 SASPPGPQFQGSSPHPQHIYSS-GSSPGPGPNMSQGHSSPVMHPGSPGHHPCAGPPGLPV 512
S P G Q SP P G S PG + + GH P+ PG G+ G G P
Sbjct: 1120 SPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPG 1179
Query: 513 PQSPPLPPGPPEIVGP 528
P PPGPP GP
Sbjct: 1180 HPGQPGPPGPPGAPGP 1195
Score = 43.9 bits (102), Expect = 0.001
Identities = 43/127 (33%), Positives = 48/127 (37%), Gaps = 36/127 (28%)
Query: 477 SSPGPGPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSPPLPPGPPEI-----VGPQN- 530
++P PN QG P PG PG G PG+P P PGPP I GPQN
Sbjct: 93 TAPTRPPN-GQGPQGPKGDPGPPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGPQNY 151
Query: 531 ---------QAGVLV-------QPDTSLTPPSMGGAYHSPGFPGHVMKVPRENHCSPGSS 574
++GV V P PP G PG PG SPG
Sbjct: 152 SPQYDSYDVKSGVAVGGLAGYPGPAGPPGPPGPPGTSGHPGSPG-----------SPG-- 198
Query: 575 YQQSPGE 581
YQ PGE
Sbjct: 199 YQGPPGE 205
Score = 43.1 bits (100), Expect = 0.002
Identities = 32/106 (30%), Positives = 42/106 (39%), Gaps = 2/106 (1%)
Query: 454 SASPPGPQFQGSSPHPQHIYSSGSSPG-PGPNMSQGHSSPVMHPGSPGHHPCAGPPGLPV 512
+ PPG + P P+ + +PG G + G P G+PG AGPPG
Sbjct: 646 TGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEG 705
Query: 513 PQSPPLPPGPPEIVGPQNQAGVLVQPDTSLTPPSMGGAYHSPGFPG 558
+ PPGPP G G+ + L P G PG PG
Sbjct: 706 GKGAAGPPGPPGAAGTPGLQGMPGERG-GLGSPGPKGDKGEPGGPG 750
Score = 42.7 bits (99), Expect = 0.002
Identities = 36/125 (28%), Positives = 43/125 (34%), Gaps = 18/125 (14%)
Query: 449 PAFYTSASPPGPQFQGSSPHPQHIYSSGSSPG-------------PGPNMSQGHSSPVMH 495
P A PG P P+ PG PG + G
Sbjct: 425 PGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGE 484
Query: 496 PGSPGHHPCAGPPGLPVPQSPPLPPGPPEIVGPQNQAGVLVQPDTSLTP--PSMGGAYHS 553
G+PG AGP G+P + P G P GP+ AG +P P P M G S
Sbjct: 485 RGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAG---EPGRDGVPGGPGMRGMPGS 541
Query: 554 PGFPG 558
PG PG
Sbjct: 542 PGGPG 546
Score = 41.6 bits (96), Expect = 0.005
Identities = 40/127 (31%), Positives = 47/127 (37%), Gaps = 19/127 (14%)
Query: 457 PPGPQFQGSSPHPQHIYSSGSSPG----PGPNMSQGHSSPVMHPGSPGHHPCAGPPGL-- 510
PPG Q + P P PG PGP + G G PG GPPG
Sbjct: 553 PPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNG 612
Query: 511 -PVPQSPPL---PPGPPEIVGPQNQAGVLVQPDTSLTPPSMGGAYHSPGFPGHVMKVPRE 566
PQ PP P G GP G+ P T PP G PG PG P+
Sbjct: 613 ETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTG-GPPGENG---KPGEPG-----PKG 663
Query: 567 NHCSPGS 573
+ +PG+
Sbjct: 664 DAGAPGA 670
Score = 41.2 bits (95), Expect = 0.006
Identities = 36/122 (29%), Positives = 47/122 (38%), Gaps = 18/122 (14%)
Query: 455 ASPPGPQFQGSSPHPQHIYSSGSSPG-------PGPNMSQGHSSPVMHPG------SPGH 501
A PG + +G +P I SPG PGP G PG +PG
Sbjct: 773 AGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGE 832
Query: 502 HPCAGPPGLPVPQSPPLPPGPPEIVGPQNQAGVLVQPDTSLTPPSMG-----GAYHSPGF 556
GPPG+ P P GPP G + + G P + P + G G+ +PG
Sbjct: 833 KGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGP 892
Query: 557 PG 558
PG
Sbjct: 893 PG 894
Score = 40.8 bits (94), Expect = 0.008
Identities = 38/123 (30%), Positives = 46/123 (37%), Gaps = 16/123 (13%)
Query: 458 PGPQFQGSSPHPQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSPP 517
PG + +G P G S GP QG PG PG G GLP P
Sbjct: 830 PGEKGEGGPPGVAG--PPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSN 887
Query: 518 LPPGPPEIVGPQNQAGVLVQPDTSLTPPSMGGAYHSPGFPGHVMKVPRENHCSPGSSYQQ 577
PGPP G + G PP G +PG PG + P+ + PG +
Sbjct: 888 GNPGPPGPSGSPGKDG----------PPGPAGNTGAPGSPG--VSGPKGDAGQPGE--KG 933
Query: 578 SPG 580
SPG
Sbjct: 934 SPG 936
Score = 40.4 bits (93), Expect = 0.010
Identities = 36/108 (33%), Positives = 42/108 (38%), Gaps = 18/108 (16%)
Query: 457 PPGPQ----FQGSSPHPQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHPCAGPPGLPV 512
PPGP F GS + +GS PG N + G PG GH GPPG
Sbjct: 334 PPGPPGTAGFPGSPGAKGEVGPAGS---PGSNGAPGQRG---EPGPQGHAGAQGPPG--- 384
Query: 513 PQSPPLPPGPPEIVGPQNQAGVLVQPDT--SLTPPSMGGAYHSPGFPG 558
PP G P G AG+ P + PP GA +PG G
Sbjct: 385 ---PPGINGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRG 429
Score = 40.4 bits (93), Expect = 0.010
Identities = 39/126 (30%), Positives = 46/126 (36%), Gaps = 16/126 (12%)
Query: 457 PPGPQFQGSS------PHPQHIYS-SGSSPGPGPNMSQGHSSPVMHPGSPGHHPCAGPPG 509
PPGP G P PQ + G+ PG N G P G+PG G G
Sbjct: 619 PPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAG 678
Query: 510 LPVPQSPPLPPGPPEI---VGPQNQAGVLVQPDTSLTPPSMGGAYHSPGFPGHVMKVPRE 566
P + PP G P + GP G + PP GA +PG G M R
Sbjct: 679 APGERGPPGLAGAPGLRGGAGPPGPEG----GKGAAGPPGPPGAAGTPGLQG--MPGERG 732
Query: 567 NHCSPG 572
SPG
Sbjct: 733 GLGSPG 738
Score = 40.4 bits (93), Expect = 0.010
Identities = 37/131 (28%), Positives = 44/131 (33%), Gaps = 27/131 (20%)
Query: 455 ASPPGPQFQGSSPHPQHIYSSGSSPG----------PGPNMSQGHSSPVMHPG------- 497
A PPG SP PQ + PG PGP G + PG
Sbjct: 959 AGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGS 1018
Query: 498 --------SPGHHPCAGPPGLPVPQSPPLPPGPPEIVGPQNQAGVLVQ--PDTSLTPPSM 547
SPG G G P P PGPP VGP ++G + P P
Sbjct: 1019 DGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGP 1078
Query: 548 GGAYHSPGFPG 558
G+ +PG G
Sbjct: 1079 AGSRGAPGPQG 1089
Score = 40.0 bits (92), Expect = 0.013
Identities = 61/235 (25%), Positives = 76/235 (32%), Gaps = 42/235 (17%)
Query: 456 SPPGPQFQGSSPHPQHIYSSGSSPGPGPNMSQGHSSPV------MHPGSPGHHPCAGPPG 509
SP P +QG P +G S PGP + G S P PG PG GPPG
Sbjct: 193 SPGSPGYQGPPGEPGQ---AGPSGPPGPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPG 249
Query: 510 LPVPQSPPLPP------------------GPPEIVGPQNQAGVLVQPDTSLTPPSMGGAY 551
+ P P P G P + G G P + P G
Sbjct: 250 IKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGENGAPG-PMGPRGAPGER 308
Query: 552 HSPGFPGHVMKVPRENHCSPGSSYQQSPGEMQLNTNYESLQNPAEFYDNYYAQHSIHNFQ 611
PG PG R N + GS Q P A F + A+ +
Sbjct: 309 GRPGLPG--AAGARGNDGARGSDGQPGP---------PGPPGTAGFPGSPGAKGEVGPAG 357
Query: 612 PPNNSGDGMWHGEFAQQQPPVVQDSPNHG--SGSDGSSTRTGHGPLP-VPGLLPA 663
P ++G GE Q Q P +GS G G +P PGL+ A
Sbjct: 358 SPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGA 412
Score = 38.9 bits (89), Expect = 0.029
Identities = 39/131 (29%), Positives = 50/131 (38%), Gaps = 9/131 (6%)
Query: 457 PPGPQFQ-GSSPHPQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQS 515
PPGP G S +G + PGP S+G P G G G G+ +
Sbjct: 1051 PPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRG 1110
Query: 516 PPLPPGPPEIVGPQNQAGVLVQPDTS-----LTPPSMGGAYHSPGFPGHV-MKVPRENHC 569
P PG P GP Q G + P + + P G + G PG + PR N
Sbjct: 1111 FPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRG 1170
Query: 570 SPGSSYQQSPG 580
GS + SPG
Sbjct: 1171 ERGS--EGSPG 1179
Score = 37.7 bits (86), Expect = 0.066
Identities = 35/117 (29%), Positives = 42/117 (35%), Gaps = 22/117 (18%)
Query: 454 SASPPGPQ-------FQG--------SSPHPQHIYSSGSSPG----PGPNMSQGHSSPVM 494
+A PPGP QG SP P+ PG PG + +G + P+
Sbjct: 709 AAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIG 768
Query: 495 HPG---SPGHHPCAGPPGLPVPQSPPLPPGPPEIVGPQNQAGVLVQPDTSLTPPSMG 548
PG PG G PGLP P PG GP AG P + P G
Sbjct: 769 PPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKG 825
Score = 37.7 bits (86), Expect = 0.066
Identities = 41/141 (29%), Positives = 49/141 (34%), Gaps = 20/141 (14%)
Query: 448 PPAFYTSASPPGPQF---QGSSPHPQHIYSSGSSPG----------PGPNMSQGHSSPVM 494
PP + PPGP + P P + SPG PG S G P
Sbjct: 883 PPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPG 942
Query: 495 HPGSPGHHPCAGPPGLPVPQSPPLPPGPPEIVGPQNQAGVLVQPDTSLTPPSMG--GAYH 552
PG G G GL P P P G P GPQ G +P + G G
Sbjct: 943 APGPLGIAGITGARGLAGPPGMPGPRGSP---GPQGVKGESGKPGANGLSGERGPPGPQG 999
Query: 553 SPGFPGHVMKVPRENHCSPGS 573
PG G + R+ +PGS
Sbjct: 1000 LPGLAGTAGEPGRDG--NPGS 1018
Score = 37.4 bits (85), Expect = 0.086
Identities = 34/121 (28%), Positives = 44/121 (36%), Gaps = 11/121 (9%)
Query: 448 PPAFYTSASPPGPQFQGSSPHPQHIYSSGSSPG-PGPNMSQGHSSPVMHPGSPGHHPCAG 506
P + PPGP SP + PG PG ++G P G+PG AG
Sbjct: 373 PQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAG 432
Query: 507 PPGLPVPQSPPLP---------PGPPEIVGPQNQAGVLVQPDTSLTPPSMGGAYHSPGFP 557
PG + P P PG P G + G +P + P G +PGF
Sbjct: 433 EPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGAN-GLPGAAGERGAPGFR 491
Query: 558 G 558
G
Sbjct: 492 G 492
Score = 37.4 bits (85), Expect = 0.086
Identities = 35/119 (29%), Positives = 40/119 (33%), Gaps = 21/119 (17%)
Query: 458 PGPQFQGSSPHPQHIYSSGSSPGP-GPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQS- 515
PGP+ +P PGP GP G + P PG G G G P PQ
Sbjct: 581 PGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGL 640
Query: 516 --------PPLPPGPPEIVGPQNQAGVLVQP--------DTSLTPPSMGGAYHSPGFPG 558
PP G P GP+ AG P PP + GA PG G
Sbjct: 641 QGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGA---PGLRG 696
Score = 35.8 bits (81), Expect = 0.25
Identities = 41/156 (26%), Positives = 50/156 (32%), Gaps = 39/156 (25%)
Query: 457 PPG----PQFQGSSPHPQHIYSSGSSPGPGP---------------NMSQGHSSPVMHPG 497
PPG P +G + P G++ PGP G P G
Sbjct: 685 PPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKG 744
Query: 498 SPGHHPCAGPPGLPVPQSPPLPPGPPEIVGPQNQAGVLVQPDTSLTPPSMGGAYHSP--- 554
PG G PG P+ P P GPP G G P P + G SP
Sbjct: 745 EPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGL----PGIAGPRGSPGER 800
Query: 555 ---------GFPGHVMKVPRENHCSPGSSYQQSPGE 581
GFPG P +N G + +PGE
Sbjct: 801 GETGPPGPAGFPG----APGQNGEPGGKGERGAPGE 832
Score = 35.0 bits (79), Expect = 0.43
Identities = 28/83 (33%), Positives = 31/83 (37%), Gaps = 7/83 (8%)
Query: 458 PGPQFQGSSPHPQHIYSSGSSPGP-GPNMSQGHSSPVMHPGSPGHHPCAGPPGLPV---- 512
PG SP P + SPGP GP G S P G+ GH GPPG
Sbjct: 1112 PGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGE 1171
Query: 513 --PQSPPLPPGPPEIVGPQNQAG 533
+ P PG P GP G
Sbjct: 1172 RGSEGSPGHPGQPGPPGPPGAPG 1194
Score = 34.3 bits (77), Expect = 0.73
Identities = 33/104 (31%), Positives = 38/104 (36%), Gaps = 11/104 (10%)
Query: 459 GPQFQGSSPHPQ-HIYSSGSSPGPGPNMS---QGHSSPVMHPGSPGHHPCAGPPGLPVPQ 514
G Q P PQ H + G PG N S +G P PG+PG GPPG P
Sbjct: 363 GAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARGPPG---PA 419
Query: 515 SPPLPPGPPEIVGPQNQAGVLVQPDTSLTPPSMGGAYHSPGFPG 558
PG G + G +P P G PG PG
Sbjct: 420 GANGAPGLRGGAGEPGKNGAKGEPG----PRGERGEAGIPGVPG 459
Score = 33.1 bits (74), Expect = 1.6
Identities = 30/101 (29%), Positives = 35/101 (34%), Gaps = 13/101 (12%)
Query: 457 PPGPQFQGSSPHPQHIYSSGSSPGP-GPNMSQGHSSPVMHPGSPGHHPCAGP------PG 509
P GP + PQ PGP GP +G + P G G GP PG
Sbjct: 604 PQGPPGKNGETGPQ------GPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPG 657
Query: 510 LPVPQSPPLPPGPPEIVGPQNQAGVLVQPDTSLTPPSMGGA 550
P P+ PG P G G P + P GGA
Sbjct: 658 EPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGA 698
Score = 33.1 bits (74), Expect = 1.6
Identities = 54/218 (24%), Positives = 64/218 (29%), Gaps = 41/218 (18%)
Query: 457 PPGPQ----FQGSSPHPQHIYSSGS--------SPGP----GPNMSQGHSSPVMHPGSPG 500
PPGPQ G++ P + GS SPG G N S G HPG PG
Sbjct: 994 PPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPG 1053
Query: 501 HHPCAGPPGLPVPQSPPLPPGPPEIVGPQNQAGVLVQPDTSLTPPSMGGAYHSPGFPGHV 560
GP G + P GP GP G P G + G GH
Sbjct: 1054 P---VGPAGKSGDRGESGPAGPAGAPGPAGSRGA-PGPQGPRGDKGETGERGAAGIKGH- 1108
Query: 561 MKVPRENHCSPGSSYQQSPGEMQLNTNYESLQNPAEFYDNYYAQHSIHNFQPPNNSGDGM 620
R +PG+ P Q P + + PP G
Sbjct: 1109 ----RGFPGNPGAPGSPGPAGQQGAIGSPGPAGP---------RGPVGPSGPPGKDGTSG 1155
Query: 621 WHGEFAQQQPPVVQDSPNHGSGSDGSSTRTGHGPLPVP 658
G P+ P G GS GH P P
Sbjct: 1156 HPG-------PIGPPGPRGNRGERGSEGSPGHPGQPGP 1186
Score = 30.8 bits (68), Expect = 8.0
Identities = 28/103 (27%), Positives = 32/103 (31%), Gaps = 8/103 (7%)
Query: 464 GSSPHPQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSPPLPPGPP 523
G P ++G G + G P G PG AG G P P P G P
Sbjct: 465 GKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEP 524
Query: 524 EIVGPQNQAGVLVQP--------DTSLTPPSMGGAYHSPGFPG 558
G G+ P D PP G PG PG
Sbjct: 525 GRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPG 567
>gi|223468622 makorin ring finger protein 1 isoform 2 [Homo sapiens]
Length = 329
Score = 57.4 bits (137), Expect = 8e-08
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 275 KQI-CKYFLEGRCIKGDQCKFDHDAELEKRKEICKFYLQGYCTKGENCIYMHNE 327
KQ+ C+YF+ G C +GD C++ HD +CK++ +GYC G+ C Y H++
Sbjct: 57 KQVTCRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIYGDRCRYEHSK 110
Score = 43.9 bits (102), Expect = 0.001
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Query: 307 CKFYLQGYCTKGENCIYMHN------EFPCKFYHSGAKCYQGDNCKFSHDDLTKE 355
C++++ G C +G+NC Y H+ CK++ G C GD C++ H K+
Sbjct: 61 CRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGY-CIYGDRCRYEHSKPLKQ 114
Score = 37.4 bits (85), Expect = 0.086
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 277 ICKYFLEGRCIKGDQCKFDHDAELEKRK 304
+CKYF G CI GD+C+++H L++ +
Sbjct: 89 VCKYFQRGYCIYGDRCRYEHSKPLKQEE 116
Score = 35.8 bits (81), Expect = 0.25
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 287 IKGDQCKFDHDAE---LEKRKEICKFYLQGYCTKGENCIYMHNE 327
++G K + + E +E +K++C + G C GENC+Y+H +
Sbjct: 191 LQGSVTKEESEKEQTAVETKKQLCPYAAVGECRYGENCVYLHGD 234
>gi|223468620 makorin ring finger protein 1 isoform 1 [Homo sapiens]
Length = 482
Score = 57.4 bits (137), Expect = 8e-08
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 275 KQI-CKYFLEGRCIKGDQCKFDHDAELEKRKEICKFYLQGYCTKGENCIYMHNE 327
KQ+ C+YF+ G C +GD C++ HD +CK++ +GYC G+ C Y H++
Sbjct: 57 KQVTCRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGYCIYGDRCRYEHSK 110
Score = 43.9 bits (102), Expect = 0.001
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Query: 307 CKFYLQGYCTKGENCIYMHN------EFPCKFYHSGAKCYQGDNCKFSHDDLTKE 355
C++++ G C +G+NC Y H+ CK++ G C GD C++ H K+
Sbjct: 61 CRYFMHGVCKEGDNCRYSHDLSDSPYSVVCKYFQRGY-CIYGDRCRYEHSKPLKQ 114
Score = 37.4 bits (85), Expect = 0.086
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 277 ICKYFLEGRCIKGDQCKFDHDAELEKRK 304
+CKYF G CI GD+C+++H L++ +
Sbjct: 89 VCKYFQRGYCIYGDRCRYEHSKPLKQEE 116
Score = 35.8 bits (81), Expect = 0.25
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 287 IKGDQCKFDHDAE---LEKRKEICKFYLQGYCTKGENCIYMHNE 327
++G K + + E +E +K++C + G C GENC+Y+H +
Sbjct: 191 LQGSVTKEESEKEQTAVETKKQLCPYAAVGECRYGENCVYLHGD 234
>gi|125987603 cleavage and polyadenylation specific factor 4, 30kDa
isoform 2 [Homo sapiens]
Length = 244
Score = 57.0 bits (136), Expect = 1e-07
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Query: 270 VEHKGKQICKYFLEGRCIKGDQCKFDHDAELEKRKEICKFYLQGYCTKGENCIYMH---- 325
++ G +C++FL+ C KG C F H + ++ +CK +L+G C KG+ C ++H
Sbjct: 33 MDKSGAAVCEFFLKAACGKGGMCPFRHIS--GEKTVVCKHWLRGLCKKGDQCEFLHEYDM 90
Query: 326 NEFP-CKFYHSGAKCYQGDNCKFSHDDLTKETK 357
+ P C FY +C C F H D + K
Sbjct: 91 TKMPECYFYSKFGEC-SNKECPFLHIDPESKIK 122
Score = 49.7 bits (117), Expect = 2e-05
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 9/79 (11%)
Query: 277 ICKYFLEGRCIKGDQCKFDHDAELEKRKEICKFYLQ-GYCTKGENCIYMHNE-----FPC 330
+CK++L G C KGDQC+F H+ ++ K E C FY + G C+ E C ++H + C
Sbjct: 67 VCKHWLRGLCKKGDQCEFLHEYDMTKMPE-CYFYSKFGECSNKE-CPFLHIDPESKIKDC 124
Query: 331 KFYHSGAKCYQGDNCKFSH 349
+Y G C G C+ H
Sbjct: 125 PWYDRGF-CKHGPLCRHRH 142
>gi|5729939 cleavage and polyadenylation specific factor 4, 30kDa
isoform 1 [Homo sapiens]
Length = 269
Score = 57.0 bits (136), Expect = 1e-07
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Query: 270 VEHKGKQICKYFLEGRCIKGDQCKFDHDAELEKRKEICKFYLQGYCTKGENCIYMH---- 325
++ G +C++FL+ C KG C F H + ++ +CK +L+G C KG+ C ++H
Sbjct: 33 MDKSGAAVCEFFLKAACGKGGMCPFRHIS--GEKTVVCKHWLRGLCKKGDQCEFLHEYDM 90
Query: 326 NEFP-CKFYHSGAKCYQGDNCKFSHDDLTKETK 357
+ P C FY +C C F H D + K
Sbjct: 91 TKMPECYFYSKFGEC-SNKECPFLHIDPESKIK 122
Score = 49.7 bits (117), Expect = 2e-05
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 9/79 (11%)
Query: 277 ICKYFLEGRCIKGDQCKFDHDAELEKRKEICKFYLQ-GYCTKGENCIYMHNE-----FPC 330
+CK++L G C KGDQC+F H+ ++ K E C FY + G C+ E C ++H + C
Sbjct: 67 VCKHWLRGLCKKGDQCEFLHEYDMTKMPE-CYFYSKFGECSNKE-CPFLHIDPESKIKDC 124
Query: 331 KFYHSGAKCYQGDNCKFSH 349
+Y G C G C+ H
Sbjct: 125 PWYDRGF-CKHGPLCRHRH 142
>gi|146134388 YLP motif containing 1 [Homo sapiens]
Length = 2146
Score = 56.6 bits (135), Expect = 1e-07
Identities = 79/384 (20%), Positives = 123/384 (32%), Gaps = 57/384 (14%)
Query: 389 LPKPPPGVGLLPTPPEHFPFSDPEDDFQTDFSDDFRKIPSLFEIVVKPTVDLAHKIGRKP 448
LP+ PG G + P S F+ +++ + + ++ + H P
Sbjct: 27 LPEASPGPGYSSSTTPAAPSSSGFMSFREQHLAQLQQLQQMHQKQMQCVLQPHHL---PP 83
Query: 449 PAFYTSASPPGPQFQGSSPHPQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHPCAGPP 508
P PG + P P + P PGP +S H HH GPP
Sbjct: 84 PPLPPPPVMPGGGYGDWQPPPPPM-----PPPPGPALSYQKQQQYKHQML--HHQRDGPP 136
Query: 509 GL------PVPQSPPLPPGPPEIVGPQNQAGVLVQPDTSLTPPSMGGAYHSPGFPGHVMK 562
GL P+SPP+PPG + P QP S PP+ Y P P
Sbjct: 137 GLVPMELESPPESPPVPPG--SYMPPSQSYMPPPQPPPSYYPPTSSQPYLPPAQPSPSQS 194
Query: 563 VPRENHCSPGSSYQQSPGEMQLNTNYESLQNPAEFYDNYYAQHSIHNFQPPNNSGDGMWH 622
P +++ +P SY S Q Y HS
Sbjct: 195 PPSQSYLAPTPSYSSSSSSSQ-----------------SYLSHS---------------- 221
Query: 623 GEFAQQQPPVVQDSPNHGS-GSDGSSTRTGHGPLPVPGLLPAVQRALFVRLTQRYQEDEE 681
Q P Q SP+ S G S P PG VQ+ + +++
Sbjct: 222 ----QSYLPSSQASPSRPSQGHSKSQLLAPPPPSAPPGNKTTVQQEPLESGAKNKSTEQQ 277
Query: 682 QTSTQPHRAPSKEEDDTVNWYSSSEEEEGSSVKSILKTLQKQTETLRNQQQP-STELSTP 740
Q + +P + ++ WY K L +K ++ +P E++ P
Sbjct: 278 QAAPEPDPSTMTPQEQQQYWYRQHLLSLQQRTKVHLPGHKKGPVVAKDTPEPVKEEVTVP 337
Query: 741 TDPRLAKEKSKGNQVVDPRLRTIP 764
++ + S + P +P
Sbjct: 338 ATSQVPESPSSEEPPLPPPNEEVP 361
Score = 39.7 bits (91), Expect = 0.017
Identities = 53/212 (25%), Positives = 75/212 (35%), Gaps = 33/212 (15%)
Query: 448 PPAFYTSASPPGPQFQGSSPHPQHIYSSGSSPGPGPNMSQGHSSPVMHP---GSPGHHPC 504
PPA + PPG P + +S PG P++S PV+ P S G P
Sbjct: 548 PPALPATVPPPG---MPPPVMPPSLPTSVPPPGMPPSLSSAGPPPVLPPPSLSSAGPPPV 604
Query: 505 AGPPGLPVPQSPPLPP--------GPPEIVGPQNQAGVLVQPDTSLTPP-SMGGAYHSPG 555
PP L PP+ P PP I P G+ Q + PP S + P
Sbjct: 605 LPPPSLSSTAPPPVMPLPPLSSATPPPGIPPPGVPQGIPPQLTAAPVPPASSSQSSQVPE 664
Query: 556 FP-GHVMKVPRENHCSPGSSYQ---QSPGEMQLNTNYESLQNPAEFYDNYYAQHSIHNFQ 611
P ++ P +P ++Y QS G + + L A Y ++
Sbjct: 665 KPRPALLPTPVSFGSAPPTTYHPPLQSAGPSEQVNSKAPLSKSALPYSSF---------- 714
Query: 612 PPNNSGDGMWHGEFAQQQP-PVVQDSPNHGSG 642
+S G+ A QP V+D P G
Sbjct: 715 ---SSDQGLGESSAAPSQPITAVKDMPVRSGG 743
Score = 39.3 bits (90), Expect = 0.023
Identities = 34/115 (29%), Positives = 39/115 (33%), Gaps = 21/115 (18%)
Query: 461 QFQGSSPHPQHIYSSGSSPGPGPNMSQ-----GHSSPVMHPGSPGHHPCAGPPGLPVPQS 515
Q+ G+ P P P P M PVM P P P PPG+P P
Sbjct: 509 QYMGNMSMPPPFVPYSQMPPPLPTMPPPVLPPSLPPPVMPPALPATVP---PPGMPPPVM 565
Query: 516 PPL------PPGPPEIVGPQNQAGVLVQPDTS-------LTPPSMGGAYHSPGFP 557
PP PPG P + VL P S L PPS+ P P
Sbjct: 566 PPSLPTSVPPPGMPPSLSSAGPPPVLPPPSLSSAGPPPVLPPPSLSSTAPPPVMP 620
Score = 35.0 bits (79), Expect = 0.43
Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Query: 457 PPGPQFQGSSPHPQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHH--PCAGPPGLPVPQ 514
P + Q +S P +Y S P P M + S V P P PP +P+P
Sbjct: 1491 PQESRLQNTSSRPG-MYPPPGSYRPPPPMGKPPGSIVRPSAPPARSSVPVTRPP-VPIPP 1548
Query: 515 SPPLPP--GPPEIVGPQNQA 532
PP PP PP ++ PQ A
Sbjct: 1549 PPPPPPLPPPPPVIKPQTSA 1568
>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
Length = 1669
Score = 55.8 bits (133), Expect = 2e-07
Identities = 58/214 (27%), Positives = 75/214 (35%), Gaps = 32/214 (14%)
Query: 386 ITPLPKPPPGVGLLPTPPEHFPFSDPEDDFQTDFSDDFRKIPSLFEIVVKPTVDLAHKIG 445
I PLP PP GL +P F P+ D + +P V +P + G
Sbjct: 641 IVPLPGPPGAEGLPGSPG----FPGPQGDRGFPGTPGRPGLPGEKGAVGQPGIGFPGPPG 696
Query: 446 RK-----PPAFYTSASPPGPQFQGSSPHPQHIYSSGSSPG------------PGPNMSQG 488
K P +P P F G +P + PG PG + G
Sbjct: 697 PKGVDGLPGDMGPPGTPGRPGFNGLPGNPG-VQGQKGEPGVGLPGLKGLPGLPGIPGTPG 755
Query: 489 HSSPVMHPGSPGHHPCAGPPGLPVPQSPPLPPGPPEIVGPQNQAGVLVQ----------P 538
+ PG PG H GPPGL + P PPG P VG G+ P
Sbjct: 756 EKGSIGVPGVPGEHGAIGPPGLQGIRGEPGPPGLPGSVGSPGVPGIGPPGARGPPGGQGP 815
Query: 539 DTSLTPPSMGGAYHSPGFPGHVMKVPRENHCSPG 572
PP + G PGFPG M P+ + + G
Sbjct: 816 PGLSGPPGIKGEKGFPGFPGLDMPGPKGDKGAQG 849
Score = 48.5 bits (114), Expect = 4e-05
Identities = 37/110 (33%), Positives = 42/110 (38%), Gaps = 17/110 (15%)
Query: 457 PPGPQFQGSSPHPQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHPCAGPPGLP----- 511
PPGPQ Q P SPG +G P PG PG GPPGLP
Sbjct: 1214 PPGPQGQPGLP---------GSPGHATEGPKGDRGPQGQPGLPGLPGPMGPPGLPGIDGV 1264
Query: 512 -VPQSPPLPPGPPEIVGPQNQAGVLVQPDTSLTPPSMG--GAYHSPGFPG 558
+ P PG P + GP+ G P +P G G PG PG
Sbjct: 1265 KGDKGNPGWPGAPGVPGPKGDPGFQGMPGIGGSPGITGSKGDMGPPGVPG 1314
Score = 45.8 bits (107), Expect = 2e-04
Identities = 43/137 (31%), Positives = 51/137 (37%), Gaps = 15/137 (10%)
Query: 449 PAFYTSASPPGPQFQGSSPHPQHIYSSGSSPG---PGPNMSQGHSSPVMHPGSPGHHPCA 505
P F + PPG G P I G PG G G PG PG
Sbjct: 141 PGFAGNPGPPG--LPGMKGDPGEIL--GHVPGMLLKGERGFPGIPGTPGPPGLPGLQGPV 196
Query: 506 GPPGLPVPQSPPLPPGPPEIVGPQNQAGVLVQ-PDTSLTPPSMGGAYHSPGFPGHVMKVP 564
GPPG P PP PPGPP G + Q G+ Q P + G PG PG
Sbjct: 197 GPPGFTGPPGPPGPPGPP---GEKGQMGLSFQGPKGDKGDQGVSG---PPGVPGQAQVQE 250
Query: 565 RENHCSPGSSYQQ-SPG 580
+ + + G Q+ PG
Sbjct: 251 KGDFATKGEKGQKGEPG 267
Score = 44.7 bits (104), Expect = 5e-04
Identities = 44/159 (27%), Positives = 54/159 (33%), Gaps = 41/159 (25%)
Query: 449 PAFYTSASPPGPQFQGSSPHPQHIYSSGSSPGP----GPNMSQGHSSPVMHPGSPGHHPC 504
P + PPG +P I PGP G N ++G P+ PG PG
Sbjct: 87 PGTKGTRGPPGASGYPGNPGLPGIPGQDGPPGPPGIPGCNGTKGERGPLGPPGLPGFAGN 146
Query: 505 AGPPGLPVPQSPP--------------------LP--PGPPEIVGPQNQAGVLVQPDTSL 542
GPPGLP + P +P PGPP + G Q G
Sbjct: 147 PGPPGLPGMKGDPGEILGHVPGMLLKGERGFPGIPGTPGPPGLPGLQGPVG--------- 197
Query: 543 TPPSMGGAYHSPGFPGHVMKVPRENHCSPGSSYQQSPGE 581
PP G PG PG P G S+Q G+
Sbjct: 198 -PPGFTGPPGPPGPPG-----PPGEKGQMGLSFQGPKGD 230
Score = 44.3 bits (103), Expect = 7e-04
Identities = 34/102 (33%), Positives = 44/102 (43%), Gaps = 18/102 (17%)
Query: 457 PPGPQFQGSSPHPQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSP 516
P GPQ P Q G + PG ++G P PG+ G+ G PG+P P
Sbjct: 68 PEGPQ----GPPGQ----KGDTGEPGLPGTKGTRGP---PGASGYPGNPGLPGIPGQDGP 116
Query: 517 PLPPGPPEIVGPQNQAGVLVQPDTSLTPPSMGGAYHSPGFPG 558
P PPG P G + + G L PP + G +PG PG
Sbjct: 117 PGPPGIPGCNGTKGERG-------PLGPPGLPGFAGNPGPPG 151
Score = 43.5 bits (101), Expect = 0.001
Identities = 29/82 (35%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Query: 482 GPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSPP---LPPGPPEIVGPQNQAGVLVQP 538
GP +G PG PG AG PG P P+ P PG P + GP+ G + P
Sbjct: 960 GPIGEKGSRGDPGTPGVPGKDGQAGQPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLP 1019
Query: 539 DT--SLTPPSMGGAYHSPGFPG 558
T P + G SPG PG
Sbjct: 1020 GTPGEKGVPGIPGPQGSPGLPG 1041
Score = 40.0 bits (92), Expect = 0.013
Identities = 36/113 (31%), Positives = 42/113 (37%), Gaps = 14/113 (12%)
Query: 458 PGPQFQGSSPHPQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHPCAGPPG--LPVPQS 515
PGP+ P P+ PGP G + PG G G PG LP P
Sbjct: 352 PGPR---GEPGPKGFPGLPGQPGPPGLPVPGQAGAPGFPGERGEKGDRGFPGTSLPGPSG 408
Query: 516 PPLPPGPPEIVGPQNQAG-----VLVQPDTSLTPPSMGGAYHSPGFPGHVMKV 563
PGPP GP Q G V QP PP G PG PG + ++
Sbjct: 409 RDGLPGPPGSPGPPGQPGYTNGIVECQPG----PPGDQGPPGIPGQPGFIGEI 457
Score = 40.0 bits (92), Expect = 0.013
Identities = 37/129 (28%), Positives = 43/129 (33%), Gaps = 19/129 (14%)
Query: 449 PAFYTSASPPGPQFQGSSPHPQHIYSSGSS-----PG---PGPNMSQGHSSPVMHPGSPG 500
P PPG G + P G PG PGP+ G P PG PG
Sbjct: 364 PGLPGQPGPPGLPVPGQAGAPGFPGERGEKGDRGFPGTSLPGPSGRDGLPGPPGSPGPPG 423
Query: 501 HHPCAG-----PPGLPVPQSPPLPPGPPEIVGPQNQAG------VLVQPDTSLTPPSMGG 549
PG P Q PP PG P +G + G ++ D PP G
Sbjct: 424 QPGYTNGIVECQPGPPGDQGPPGIPGQPGFIGEIGEKGQKGESCLICDIDGYRGPPGPQG 483
Query: 550 AYHSPGFPG 558
GFPG
Sbjct: 484 PPGEIGFPG 492
Score = 39.7 bits (91), Expect = 0.017
Identities = 37/108 (34%), Positives = 39/108 (36%), Gaps = 17/108 (15%)
Query: 460 PQFQGSSPHPQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSPPL- 518
P FQG + G PGP G GSPG G PGL Q P
Sbjct: 266 PGFQGMPG----VGEKGEPGKPGPRGKPGKDGDKGEKGSPGFPGEPGYPGLIGRQGPQGE 321
Query: 519 -----PPGPPEIV---GPQNQAGVLVQPDTSLTPPSMGGAYHSPGFPG 558
PPGPP IV GP + G P T P G GFPG
Sbjct: 322 KGEAGPPGPPGIVIGTGPLGEKGERGYPGT----PGPRGEPGPKGFPG 365
Score = 39.3 bits (90), Expect = 0.023
Identities = 36/102 (35%), Positives = 40/102 (39%), Gaps = 21/102 (20%)
Query: 474 SSGSSPGPGPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSP-----PLP--------P 520
S G + PGP G + P+ G G G PGLP P+ PLP P
Sbjct: 596 SRGDTGPPGPP-GYGPAGPIGDKGQAGFPGGPGSPGLPGPKGEPGKIVPLPGPPGAEGLP 654
Query: 521 GPPEIVGPQNQAGVLVQPDTSLTP--PSMGGAYHSP--GFPG 558
G P GPQ G P T P P GA P GFPG
Sbjct: 655 GSPGFPGPQGDRGF---PGTPGRPGLPGEKGAVGQPGIGFPG 693
Score = 38.5 bits (88), Expect = 0.039
Identities = 41/144 (28%), Positives = 48/144 (33%), Gaps = 24/144 (16%)
Query: 460 PQFQGSSPHPQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSPPLP 519
P F G +P I G G G V+ G G G PG P P+ P P
Sbjct: 301 PGFPGEPGYPGLIGRQGPQGEKGEAGPPGPPGIVIGTGPLGEKGERGYPGTPGPRGEPGP 360
Query: 520 ---------PGPPEI-----------VGPQNQAGVLVQPDTSLTPPS----MGGAYHSPG 555
PGPP + G + + G P TSL PS + G SPG
Sbjct: 361 KGFPGLPGQPGPPGLPVPGQAGAPGFPGERGEKGDRGFPGTSLPGPSGRDGLPGPPGSPG 420
Query: 556 FPGHVMKVPRENHCSPGSSYQQSP 579
PG C PG Q P
Sbjct: 421 PPGQPGYTNGIVECQPGPPGDQGP 444
Score = 38.5 bits (88), Expect = 0.039
Identities = 36/112 (32%), Positives = 42/112 (37%), Gaps = 28/112 (25%)
Query: 459 GPQFQGSSPHPQHIYSSGSSPG----PGPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQ 514
G Q P P+ +PG PGP S G PG+PG G PG+P PQ
Sbjct: 981 GQAGQPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGL---PGTPGEK---GVPGIPGPQ 1034
Query: 515 SPPLPPGPPEIVGPQNQAGVLVQPDTSLTPPSMG--------GAYHSPGFPG 558
P PG G + QAG PP +G G GFPG
Sbjct: 1035 GSPGLPGDKGAKGEKGQAG----------PPGIGIPGLRGEKGDQGIAGFPG 1076
Score = 37.4 bits (85), Expect = 0.086
Identities = 25/77 (32%), Positives = 30/77 (38%), Gaps = 3/77 (3%)
Query: 482 GPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSPPLPPGPPEIVGPQNQAGVLVQPDTS 541
GP QG + PG PG G PG P P G P ++G Q G +P
Sbjct: 477 GPPGPQGPPGEIGFPGQPGAKGDRGLPGRDGVAGVPGPQGTPGLIG---QPGAKGEPGEF 533
Query: 542 LTPPSMGGAYHSPGFPG 558
+ G PGFPG
Sbjct: 534 YFDLRLKGDKGDPGFPG 550
Score = 36.2 bits (82), Expect = 0.19
Identities = 48/180 (26%), Positives = 64/180 (35%), Gaps = 23/180 (12%)
Query: 390 PKPPPGVGLLPTPPEHFPFSDPEDDFQTDFSDDFRKIPSLFEIVVKPTVDLAHKIGRKPP 449
P P G LP P H P+ D +P P +D K + P
Sbjct: 1214 PPGPQGQPGLPGSPGHAT-EGPKGDRGPQGQPGLPGLPGPMGPPGLPGID-GVKGDKGNP 1271
Query: 450 AFYTSASPPGPQFQGSSPHPQHIYSSGSSPG-------PGPNMSQGHSSPVMHPGSPGHH 502
+ + PGP+ P Q + G SPG GP G P PG G
Sbjct: 1272 GWPGAPGVPGPK---GDPGFQGMPGIGGSPGITGSKGDMGPPGVPGFQGPKGLPGLQGIK 1328
Query: 503 PCAGPPGLPVPQSPPLPPGPPEIVGPQNQAGVLVQPDTSLT----PPSMGGAYHSPGFPG 558
G G+P + P PPGPP GP + +++ + L PP + G PG G
Sbjct: 1329 GDQGDQGVPGAKGLPGPPGPP---GPYD----IIKGEPGLPGPEGPPGLKGLQGLPGPKG 1381
Score = 35.4 bits (80), Expect = 0.33
Identities = 31/101 (30%), Positives = 37/101 (36%), Gaps = 9/101 (8%)
Query: 457 PPGP----QFQGSSPHPQHIYSSGSSPG-PGPNMSQGHSSPVMHPGSPGHHPCAGPPGLP 511
PPGP + + P P+ G PGP QG + V PG PG G PG
Sbjct: 1348 PPGPYDIIKGEPGLPGPEGPPGLKGLQGLPGPKGQQGVTGLVGIPGPPGIPGFDGAPGQK 1407
Query: 512 VPQSPPLPPGPPEIVGPQNQAGVLVQPDTSLTPPSMGGAYH 552
P P GP GP G+ S+ PP H
Sbjct: 1408 GEMGPAGPTGPRGFPGPPGPDGL----PGSMGPPGTPSVDH 1444
Score = 34.3 bits (77), Expect = 0.73
Identities = 33/122 (27%), Positives = 37/122 (30%), Gaps = 24/122 (19%)
Query: 457 PPGPQFQGSSPHPQHIYSSGSSPG------------PGPNMSQGHSSPVMHPGSPGHHPC 504
P GP Q P I S G PG +G V PG G
Sbjct: 1143 PTGPAGQKGEPGSDGIPGSAGEKGEPGLPGRGFPGFPGAKGDKGSKGEVGFPGLAGSPGI 1202
Query: 505 AGPPGLPVPQSPPLPPGPPEI--------VGPQNQAGVLVQPDTSLTPPSMGGAYHSPGF 556
G G PP P G P + GP+ G QP P + G PG
Sbjct: 1203 PGSKGEQGFMGPPGPQGQPGLPGSPGHATEGPKGDRGPQGQPGL----PGLPGPMGPPGL 1258
Query: 557 PG 558
PG
Sbjct: 1259 PG 1260
Score = 33.9 bits (76), Expect = 0.95
Identities = 30/105 (28%), Positives = 35/105 (33%), Gaps = 25/105 (23%)
Query: 479 PG-PGPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSPPLP-----------------P 520
PG PGP G G PG G PGLP P P
Sbjct: 1138 PGTPGPTGPAGQKGEPGSDGIPGSAGEKGEPGLPGRGFPGFPGAKGDKGSKGEVGFPGLA 1197
Query: 521 GPPEIVGPQNQAGVLVQPDTSLTPPSMGGAYHSPGFPGHVMKVPR 565
G P I G + + G + PP G PG PGH + P+
Sbjct: 1198 GSPGIPGSKGEQGFM-------GPPGPQGQPGLPGSPGHATEGPK 1235
Score = 33.1 bits (74), Expect = 1.6
Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 8/64 (12%)
Query: 497 GSPGHHPCAGPPGLPVPQSPPLPPGPPEIVGPQNQAGVLVQPDTSLT--PPSMGGAYHSP 554
G PG G PG+ P+ P PPG G + G+ P T T PP G +P
Sbjct: 52 GLPGLQGVIGFPGMQGPEGPQGPPGQK---GDTGEPGL---PGTKGTRGPPGASGYPGNP 105
Query: 555 GFPG 558
G PG
Sbjct: 106 GLPG 109
Score = 32.7 bits (73), Expect = 2.1
Identities = 54/220 (24%), Positives = 73/220 (33%), Gaps = 27/220 (12%)
Query: 455 ASPPGPQFQGSSPHPQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHPCAGP------P 508
A PPG G +G PG +G PGSPG G P
Sbjct: 1052 AGPPGIGIPGLRGEKGDQGIAGFPGSPGEKGEKGSIGIPGMPGSPGLKGSPGSVGYPGSP 1111
Query: 509 GLPVPQSPPLPPGPPEIVGPQNQAGVLVQPDTSLTPPSMGGAYHSPGFPGHVMKVPRENH 568
GLP + PG I G + +AG+ P + P G S G PG + +
Sbjct: 1112 GLPGEKGDKGLPGLDGIPGVKGEAGLPGTPGPT-GPAGQKGEPGSDGIPGSAGE--KGEP 1168
Query: 569 CSPGSSYQQSPGEMQLNTNYESLQNPAEFYDNYYAQHSIHNFQPPNNSGDGMWHGEFAQQ 628
PG + PG + + P I P + G+ + G Q
Sbjct: 1169 GLPGRGFPGFPGAKGDKGSKGEVGFP-----GLAGSPGI-----PGSKGEQGFMGPPGPQ 1218
Query: 629 QPPVVQDSPNHGS----GSDGSSTRTG----HGPLPVPGL 660
P + SP H + G G + G GP+ PGL
Sbjct: 1219 GQPGLPGSPGHATEGPKGDRGPQGQPGLPGLPGPMGPPGL 1258
Score = 32.3 bits (72), Expect = 2.8
Identities = 33/109 (30%), Positives = 39/109 (35%), Gaps = 13/109 (11%)
Query: 455 ASPPGPQFQGSSPHPQHIYSSGSSPGPGPNMS----QGHSSPVMHPGSPGHHPCAGPPGL 510
A PGPQ P I G+ PG +G PG PG AG PG
Sbjct: 509 AGVPGPQGT-----PGLIGQPGAKGEPGEFYFDLRLKGDKGDPGFPGQPGMTGRAGSPGR 563
Query: 511 PVPQSPPLPPGPPEIVGPQNQAGVLVQPDTSLTPPSMGGAYHSPGFPGH 559
P P G P VG + + G P + P G PG PG+
Sbjct: 564 DGHPGLPGPKGSPGSVGLKGERG----PPGGVGFPGSRGDTGPPGPPGY 608
Score = 32.3 bits (72), Expect = 2.8
Identities = 40/136 (29%), Positives = 47/136 (34%), Gaps = 23/136 (16%)
Query: 445 GRKPPAFYTSASPPG-------PQFQG-SSPHPQHIYSSGSSPG-------PGPNMSQGH 489
G+ PP + PPG P F G P P+ + PG PG QG
Sbjct: 812 GQGPPGL---SGPPGIKGEKGFPGFPGLDMPGPKGDKGAQGLPGITGQSGLPGLPGQQGA 868
Query: 490 SSPVMHPGSPGHHPCAGPPGLPVPQSPPLPPGPPEIVGPQNQAGVLVQPDTSLTPPSMG- 548
PGS G G PG P P P G P + G + G P G
Sbjct: 869 PGIPGFPGSKGEMGVMGTPGQP---GSPGPVGAPGLPGEKGDHGFPGSSGPRGDPGLKGD 925
Query: 549 -GAYHSPGFPGHVMKV 563
G PG PG + KV
Sbjct: 926 KGDVGLPGKPGSMDKV 941
Score = 31.2 bits (69), Expect = 6.1
Identities = 27/86 (31%), Positives = 32/86 (37%), Gaps = 9/86 (10%)
Query: 476 GSSPGP-GPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSPPLPPGPPEIVGPQNQAGV 534
GS G G +G P+ GS G G PG+P PG P GP+ G+
Sbjct: 944 GSMKGQKGDQGEKGQIGPIGEKGSRGD---PGTPGVPGKDGQAGQPGQP---GPKGDPGI 997
Query: 535 LVQPDTSLTPPSMG--GAYHSPGFPG 558
P P G G PG PG
Sbjct: 998 SGTPGAPGLPGPKGSVGGMGLPGTPG 1023
Score = 30.8 bits (68), Expect = 8.0
Identities = 45/190 (23%), Positives = 58/190 (30%), Gaps = 29/190 (15%)
Query: 393 PPGVGLLPTPPEH-----FPFSDPEDDFQTDFSDDFRKIPSLFEIVVKPTVDLAHKIGRK 447
PPG P PP F P+ D +P ++ K + G+K
Sbjct: 204 PPGPPGPPGPPGEKGQMGLSFQGPKGDKGDQGVSGPPGVPGQAQVQEKGDFATKGEKGQK 263
Query: 448 PPAFYTSASPPGPQFQGSSPHPQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHPCAGP 507
+ G + + P P+ G G S G +PG G G
Sbjct: 264 GEPGFQGMPGVGEKGEPGKPGPRG--KPGKDGDKGEKGSPGFPGEPGYPGLIGRQGPQGE 321
Query: 508 PGLPVPQSP------------------PLPPGPPEIVGPQNQAGVLVQP-DTSLTPPSMG 548
G P P P PGP GP+ G+ QP L P
Sbjct: 322 KGEAGPPGPPGIVIGTGPLGEKGERGYPGTPGPRGEPGPKGFPGLPGQPGPPGLPVPGQA 381
Query: 549 GAYHSPGFPG 558
GA PGFPG
Sbjct: 382 GA---PGFPG 388
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 55.8 bits (133), Expect = 2e-07
Identities = 56/196 (28%), Positives = 65/196 (33%), Gaps = 40/196 (20%)
Query: 377 ELEELRKRGITPLPKPPPGVGLLPTPPEHFPFSDPEDDFQTDFSDDFRKIPSLFEIVVKP 436
+LE LR P P PPGV LP P F + + V
Sbjct: 894 DLEALRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSD---------------------VPG 932
Query: 437 TVDLAHKIGRK-PPAFYTSASPPGPQFQGSSPHPQHIYSSGSSPGPGPNMSQGHSSPVMH 495
L GR+ PP F PPGP + P +G G + GH
Sbjct: 933 PAGLPGVPGREGPPGFPGLPGPPGPPGREGPPG-----RTGQKGSLGEAGAPGHKGSKGA 987
Query: 496 PGSPGHHPCAGPPGLPVPQSPPLPPGPPEIVGPQNQAG-------------VLVQPDTSL 542
PG G +G G P P PP PPGPP GP AG D
Sbjct: 988 PGPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSADGPQ 1047
Query: 543 TPPSMGGAYHSPGFPG 558
PP + G PG PG
Sbjct: 1048 GPPGLPGLKGDPGVPG 1063
Score = 47.8 bits (112), Expect = 6e-05
Identities = 46/157 (29%), Positives = 57/157 (36%), Gaps = 30/157 (19%)
Query: 388 PLPKPPPGVGLLPTPPEHFPFSDPEDDFQTDFSDDFRKIPSLFEIVVKPTVDLAHKIGRK 447
P PK G P PP FPF DF ++ + + D K R
Sbjct: 1294 PGPKGAKGEVGPPGPPGQFPF-------------DFLQLEAEMKGEKGDRGDAGQKGERG 1340
Query: 448 PPA---FYTSA-----SPPGPQFQGSSPHPQHIYSSGSSPGPGPNMS-----QGHSSPVM 494
P F+ S+ PPGP+ P P+ G PGP +G P
Sbjct: 1341 EPGGGGFFGSSLPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQGPPG 1400
Query: 495 HPGSPGHHPCAGPP----GLPVPQSPPLPPGPPEIVG 527
PG PG GP +P P PP PPGPP +G
Sbjct: 1401 PPGPPGPPSFPGPHRQTISVPGPPGPPGPPGPPGTMG 1437
Score = 43.5 bits (101), Expect = 0.001
Identities = 31/88 (35%), Positives = 35/88 (39%), Gaps = 12/88 (13%)
Query: 444 IGRKPPAFYTSASPPGPQFQGSSPHPQHIYSSGSSPG-PGPNMSQGHSSPVMHPGSPGH- 501
+G PA T PGPQ P PG PG + G + P PG+PG
Sbjct: 790 LGPAGPALQTV---PGPQGPPGPPGRDGTPGRDGEPGDPGEDGKPGDTGPQGFPGTPGDV 846
Query: 502 -------HPCAGPPGLPVPQSPPLPPGP 522
P G G P PQ PP PPGP
Sbjct: 847 GPKGDKGDPGVGERGPPGPQGPPGPPGP 874
Score = 41.6 bits (96), Expect = 0.005
Identities = 37/115 (32%), Positives = 41/115 (35%), Gaps = 21/115 (18%)
Query: 482 GPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSPPLPPGP--PEIVGPQNQAGVLVQPD 539
G G P G PG GPPGLP P SP P GP + GPQ G P
Sbjct: 755 GQKGEPGVPGPPGRAGPPGSPCLPGPPGLPCPVSPLGPAGPALQTVPGPQGPPG---PPG 811
Query: 540 TSLTP--------------PSMGGAYHSPGFPGHVMKVPRENHCSPGSSYQQSPG 580
TP P G PG PG V P+ + PG + PG
Sbjct: 812 RDGTPGRDGEPGDPGEDGKPGDTGPQGFPGTPGDV--GPKGDKGDPGVGERGPPG 864
Score = 40.4 bits (93), Expect = 0.010
Identities = 33/96 (34%), Positives = 37/96 (38%), Gaps = 15/96 (15%)
Query: 473 YSSGSSPGPGPNMSQGHSSPVMHPGSPGH--HPCAGPPGLPVPQSPPL--------PPGP 522
+ S PGP G P +PG PG G PG P PQ PP PPGP
Sbjct: 1347 FFGSSLPGP-----PGPPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQGPPGP 1401
Query: 523 PEIVGPQNQAGVLVQPDTSLTPPSMGGAYHSPGFPG 558
P GP + G Q + PP G PG G
Sbjct: 1402 PGPPGPPSFPGPHRQTISVPGPPGPPGPPGPPGTMG 1437
Score = 38.1 bits (87), Expect = 0.050
Identities = 37/119 (31%), Positives = 45/119 (37%), Gaps = 15/119 (12%)
Query: 441 AHKIGRKPPAFYTSASPPGPQFQGSSPHPQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPG 500
A K + P F PPGP G + I G PG N +G G PG
Sbjct: 1194 AQKGAKGEPGF---RGPPGPY--GRPGYKGEIGFPGRPGRPGMNGLKGEK------GEPG 1242
Query: 501 HHPCA-GPPGLPVPQSPPLPPGPPEIVGPQNQAGVLVQPDTSLTPPSMGGAYHSPGFPG 558
G G+P P PP PPGPP P + V + + PP + G PG G
Sbjct: 1243 DASLGFGMRGMPGPPGPPGPPGPPGT--PVYDSNVFAE-SSRPGPPGLPGNQGPPGPKG 1298
Score = 36.6 bits (83), Expect = 0.15
Identities = 38/125 (30%), Positives = 44/125 (35%), Gaps = 15/125 (12%)
Query: 457 PPGPQFQGSSPHPQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHPCAGPPGLP----- 511
PPGP P S GP + ++ P PG PG G PGLP
Sbjct: 1011 PPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSADGPQGPPGLPGLKGDPGVPGLPGAKGE 1070
Query: 512 -----VPQSPPLPPGPPEIVGPQNQAGVLVQPDTSLTPPSMG----GAYHSPGFPGHVMK 562
VP P L PG I GPQ G P G G PG PG V+
Sbjct: 1071 VGADGVPGFPGL-PGREGIAGPQGPKGDRGSRGEKGDPGKDGVGQPGLPGPPGPPGPVVY 1129
Query: 563 VPREN 567
V ++
Sbjct: 1130 VSEQD 1134
Score = 36.6 bits (83), Expect = 0.15
Identities = 26/83 (31%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Query: 479 PGPGPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQS---PPLPPGPPEIVGPQNQAGVL 535
PGP +S+ S + PG G AG PG P+ G P G + + G +
Sbjct: 1124 PGPVVYVSEQDGSVLSVPGPEGRPGFAGFPGPAGPKGNLGSKGERGSPGPKGEKGEPGSI 1183
Query: 536 VQPDTSLTPPSMGGAYHSPGFPG 558
PD P+ GA PGF G
Sbjct: 1184 FSPDGGALGPAQKGAKGEPGFRG 1206
Score = 35.8 bits (81), Expect = 0.25
Identities = 39/147 (26%), Positives = 53/147 (36%), Gaps = 50/147 (34%)
Query: 457 PPGPQFQGSSPHPQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHPCAGPPG------- 509
PPGP G+ + ++++ S PGP P + G+ P G+ G GPPG
Sbjct: 1262 PPGPP--GTPVYDSNVFAESSRPGP-PGLP-GNQGPPGPKGAKGEVGPPGPPGQFPFDFL 1317
Query: 510 ----------------------------------LPVPQSPPLPPGPPEIVGPQNQAGVL 535
LP P PP P G P I GP+ ++ +
Sbjct: 1318 QLEAEMKGEKGDRGDAGQKGERGEPGGGGFFGSSLPGPPGPPGPRGYPGIPGPKGES-IR 1376
Query: 536 VQPDT--SLTPPSMG--GAYHSPGFPG 558
QP PP +G G PG PG
Sbjct: 1377 GQPGPPGPQGPPGIGYEGRQGPPGPPG 1403
Score = 34.7 bits (78), Expect = 0.56
Identities = 23/60 (38%), Positives = 25/60 (41%), Gaps = 10/60 (16%)
Query: 481 PGPNMSQGHSSPVMHPGSPGHHPCA-------GPPGLPVPQSPPLPPGPPEIVGPQNQAG 533
PGP G P PG+P + GPPGLP Q PP P G VGP G
Sbjct: 1254 PGPPGPPGPPGP---PGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGEVGPPGPPG 1310
Score = 33.9 bits (76), Expect = 0.95
Identities = 35/111 (31%), Positives = 39/111 (35%), Gaps = 17/111 (15%)
Query: 448 PPAFYTSASPPGPQFQGSSPHPQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHPCAGP 507
PP SP GP + P Q + G PGP G PG PG G
Sbjct: 780 PPGLPCPVSPLGP----AGPALQTV--PGPQGPPGPPGRDGTPGRDGEPGDPGED---GK 830
Query: 508 PGLPVPQSPPLPPGPPEIVGPQNQAGVLVQPDTSLTPPSMGGAYHSPGFPG 558
PG PQ P PG VGP+ G D + G PG PG
Sbjct: 831 PGDTGPQGFPGTPGD---VGPKGDKG-----DPGVGERGPPGPQGPPGPPG 873
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 55.8 bits (133), Expect = 2e-07
Identities = 56/196 (28%), Positives = 65/196 (33%), Gaps = 40/196 (20%)
Query: 377 ELEELRKRGITPLPKPPPGVGLLPTPPEHFPFSDPEDDFQTDFSDDFRKIPSLFEIVVKP 436
+LE LR P P PPGV LP P F + + V
Sbjct: 479 DLEALRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSD---------------------VPG 517
Query: 437 TVDLAHKIGRK-PPAFYTSASPPGPQFQGSSPHPQHIYSSGSSPGPGPNMSQGHSSPVMH 495
L GR+ PP F PPGP + P +G G + GH
Sbjct: 518 PAGLPGVPGREGPPGFPGLPGPPGPPGREGPPG-----RTGQKGSLGEAGAPGHKGSKGA 572
Query: 496 PGSPGHHPCAGPPGLPVPQSPPLPPGPPEIVGPQNQAG-------------VLVQPDTSL 542
PG G +G G P P PP PPGPP GP AG D
Sbjct: 573 PGPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSADGPQ 632
Query: 543 TPPSMGGAYHSPGFPG 558
PP + G PG PG
Sbjct: 633 GPPGLPGLKGDPGVPG 648
Score = 47.8 bits (112), Expect = 6e-05
Identities = 46/157 (29%), Positives = 57/157 (36%), Gaps = 30/157 (19%)
Query: 388 PLPKPPPGVGLLPTPPEHFPFSDPEDDFQTDFSDDFRKIPSLFEIVVKPTVDLAHKIGRK 447
P PK G P PP FPF DF ++ + + D K R
Sbjct: 879 PGPKGAKGEVGPPGPPGQFPF-------------DFLQLEAEMKGEKGDRGDAGQKGERG 925
Query: 448 PPA---FYTSA-----SPPGPQFQGSSPHPQHIYSSGSSPGPGPNMS-----QGHSSPVM 494
P F+ S+ PPGP+ P P+ G PGP +G P
Sbjct: 926 EPGGGGFFGSSLPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQGPPG 985
Query: 495 HPGSPGHHPCAGPP----GLPVPQSPPLPPGPPEIVG 527
PG PG GP +P P PP PPGPP +G
Sbjct: 986 PPGPPGPPSFPGPHRQTISVPGPPGPPGPPGPPGTMG 1022
Score = 43.5 bits (101), Expect = 0.001
Identities = 31/88 (35%), Positives = 35/88 (39%), Gaps = 12/88 (13%)
Query: 444 IGRKPPAFYTSASPPGPQFQGSSPHPQHIYSSGSSPG-PGPNMSQGHSSPVMHPGSPGH- 501
+G PA T PGPQ P PG PG + G + P PG+PG
Sbjct: 375 LGPAGPALQTV---PGPQGPPGPPGRDGTPGRDGEPGDPGEDGKPGDTGPQGFPGTPGDV 431
Query: 502 -------HPCAGPPGLPVPQSPPLPPGP 522
P G G P PQ PP PPGP
Sbjct: 432 GPKGDKGDPGVGERGPPGPQGPPGPPGP 459
Score = 41.6 bits (96), Expect = 0.005
Identities = 37/115 (32%), Positives = 41/115 (35%), Gaps = 21/115 (18%)
Query: 482 GPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSPPLPPGP--PEIVGPQNQAGVLVQPD 539
G G P G PG GPPGLP P SP P GP + GPQ G P
Sbjct: 340 GQKGEPGVPGPPGRAGPPGSPCLPGPPGLPCPVSPLGPAGPALQTVPGPQGPPG---PPG 396
Query: 540 TSLTP--------------PSMGGAYHSPGFPGHVMKVPRENHCSPGSSYQQSPG 580
TP P G PG PG V P+ + PG + PG
Sbjct: 397 RDGTPGRDGEPGDPGEDGKPGDTGPQGFPGTPGDV--GPKGDKGDPGVGERGPPG 449
Score = 40.4 bits (93), Expect = 0.010
Identities = 33/96 (34%), Positives = 37/96 (38%), Gaps = 15/96 (15%)
Query: 473 YSSGSSPGPGPNMSQGHSSPVMHPGSPGH--HPCAGPPGLPVPQSPPL--------PPGP 522
+ S PGP G P +PG PG G PG P PQ PP PPGP
Sbjct: 932 FFGSSLPGP-----PGPPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQGPPGP 986
Query: 523 PEIVGPQNQAGVLVQPDTSLTPPSMGGAYHSPGFPG 558
P GP + G Q + PP G PG G
Sbjct: 987 PGPPGPPSFPGPHRQTISVPGPPGPPGPPGPPGTMG 1022
Score = 38.1 bits (87), Expect = 0.050
Identities = 37/119 (31%), Positives = 45/119 (37%), Gaps = 15/119 (12%)
Query: 441 AHKIGRKPPAFYTSASPPGPQFQGSSPHPQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPG 500
A K + P F PPGP G + I G PG N +G G PG
Sbjct: 779 AQKGAKGEPGF---RGPPGPY--GRPGYKGEIGFPGRPGRPGMNGLKGEK------GEPG 827
Query: 501 HHPCA-GPPGLPVPQSPPLPPGPPEIVGPQNQAGVLVQPDTSLTPPSMGGAYHSPGFPG 558
G G+P P PP PPGPP P + V + + PP + G PG G
Sbjct: 828 DASLGFGMRGMPGPPGPPGPPGPPGT--PVYDSNVFAE-SSRPGPPGLPGNQGPPGPKG 883
Score = 36.6 bits (83), Expect = 0.15
Identities = 38/125 (30%), Positives = 44/125 (35%), Gaps = 15/125 (12%)
Query: 457 PPGPQFQGSSPHPQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHPCAGPPGLP----- 511
PPGP P S GP + ++ P PG PG G PGLP
Sbjct: 596 PPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSADGPQGPPGLPGLKGDPGVPGLPGAKGE 655
Query: 512 -----VPQSPPLPPGPPEIVGPQNQAGVLVQPDTSLTPPSMG----GAYHSPGFPGHVMK 562
VP P L PG I GPQ G P G G PG PG V+
Sbjct: 656 VGADGVPGFPGL-PGREGIAGPQGPKGDRGSRGEKGDPGKDGVGQPGLPGPPGPPGPVVY 714
Query: 563 VPREN 567
V ++
Sbjct: 715 VSEQD 719
Score = 36.6 bits (83), Expect = 0.15
Identities = 26/83 (31%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Query: 479 PGPGPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQS---PPLPPGPPEIVGPQNQAGVL 535
PGP +S+ S + PG G AG PG P+ G P G + + G +
Sbjct: 709 PGPVVYVSEQDGSVLSVPGPEGRPGFAGFPGPAGPKGNLGSKGERGSPGPKGEKGEPGSI 768
Query: 536 VQPDTSLTPPSMGGAYHSPGFPG 558
PD P+ GA PGF G
Sbjct: 769 FSPDGGALGPAQKGAKGEPGFRG 791
Score = 35.8 bits (81), Expect = 0.25
Identities = 39/147 (26%), Positives = 53/147 (36%), Gaps = 50/147 (34%)
Query: 457 PPGPQFQGSSPHPQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHPCAGPPG------- 509
PPGP G+ + ++++ S PGP P + G+ P G+ G GPPG
Sbjct: 847 PPGPP--GTPVYDSNVFAESSRPGP-PGLP-GNQGPPGPKGAKGEVGPPGPPGQFPFDFL 902
Query: 510 ----------------------------------LPVPQSPPLPPGPPEIVGPQNQAGVL 535
LP P PP P G P I GP+ ++ +
Sbjct: 903 QLEAEMKGEKGDRGDAGQKGERGEPGGGGFFGSSLPGPPGPPGPRGYPGIPGPKGES-IR 961
Query: 536 VQPDT--SLTPPSMG--GAYHSPGFPG 558
QP PP +G G PG PG
Sbjct: 962 GQPGPPGPQGPPGIGYEGRQGPPGPPG 988
Score = 34.7 bits (78), Expect = 0.56
Identities = 23/60 (38%), Positives = 25/60 (41%), Gaps = 10/60 (16%)
Query: 481 PGPNMSQGHSSPVMHPGSPGHHPCA-------GPPGLPVPQSPPLPPGPPEIVGPQNQAG 533
PGP G P PG+P + GPPGLP Q PP P G VGP G
Sbjct: 839 PGPPGPPGPPGP---PGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGEVGPPGPPG 895
Score = 33.9 bits (76), Expect = 0.95
Identities = 35/111 (31%), Positives = 39/111 (35%), Gaps = 17/111 (15%)
Query: 448 PPAFYTSASPPGPQFQGSSPHPQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHPCAGP 507
PP SP GP + P Q + G PGP G PG PG G
Sbjct: 365 PPGLPCPVSPLGP----AGPALQTV--PGPQGPPGPPGRDGTPGRDGEPGDPGED---GK 415
Query: 508 PGLPVPQSPPLPPGPPEIVGPQNQAGVLVQPDTSLTPPSMGGAYHSPGFPG 558
PG PQ P PG VGP+ G D + G PG PG
Sbjct: 416 PGDTGPQGFPGTPGD---VGPKGDKG-----DPGVGERGPPGPQGPPGPPG 458
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 55.8 bits (133), Expect = 2e-07
Identities = 56/196 (28%), Positives = 65/196 (33%), Gaps = 40/196 (20%)
Query: 377 ELEELRKRGITPLPKPPPGVGLLPTPPEHFPFSDPEDDFQTDFSDDFRKIPSLFEIVVKP 436
+LE LR P P PPGV LP P F + + V
Sbjct: 659 DLEALRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSD---------------------VPG 697
Query: 437 TVDLAHKIGRK-PPAFYTSASPPGPQFQGSSPHPQHIYSSGSSPGPGPNMSQGHSSPVMH 495
L GR+ PP F PPGP + P +G G + GH
Sbjct: 698 PAGLPGVPGREGPPGFPGLPGPPGPPGREGPPG-----RTGQKGSLGEAGAPGHKGSKGA 752
Query: 496 PGSPGHHPCAGPPGLPVPQSPPLPPGPPEIVGPQNQAG-------------VLVQPDTSL 542
PG G +G G P P PP PPGPP GP AG D
Sbjct: 753 PGPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSADGPQ 812
Query: 543 TPPSMGGAYHSPGFPG 558
PP + G PG PG
Sbjct: 813 GPPGLPGLKGDPGVPG 828
Score = 47.8 bits (112), Expect = 6e-05
Identities = 46/157 (29%), Positives = 57/157 (36%), Gaps = 30/157 (19%)
Query: 388 PLPKPPPGVGLLPTPPEHFPFSDPEDDFQTDFSDDFRKIPSLFEIVVKPTVDLAHKIGRK 447
P PK G P PP FPF DF ++ + + D K R
Sbjct: 1059 PGPKGAKGEVGPPGPPGQFPF-------------DFLQLEAEMKGEKGDRGDAGQKGERG 1105
Query: 448 PPA---FYTSA-----SPPGPQFQGSSPHPQHIYSSGSSPGPGPNMS-----QGHSSPVM 494
P F+ S+ PPGP+ P P+ G PGP +G P
Sbjct: 1106 EPGGGGFFGSSLPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQGPPG 1165
Query: 495 HPGSPGHHPCAGPP----GLPVPQSPPLPPGPPEIVG 527
PG PG GP +P P PP PPGPP +G
Sbjct: 1166 PPGPPGPPSFPGPHRQTISVPGPPGPPGPPGPPGTMG 1202
Score = 43.5 bits (101), Expect = 0.001
Identities = 31/88 (35%), Positives = 35/88 (39%), Gaps = 12/88 (13%)
Query: 444 IGRKPPAFYTSASPPGPQFQGSSPHPQHIYSSGSSPG-PGPNMSQGHSSPVMHPGSPGH- 501
+G PA T PGPQ P PG PG + G + P PG+PG
Sbjct: 555 LGPAGPALQTV---PGPQGPPGPPGRDGTPGRDGEPGDPGEDGKPGDTGPQGFPGTPGDV 611
Query: 502 -------HPCAGPPGLPVPQSPPLPPGP 522
P G G P PQ PP PPGP
Sbjct: 612 GPKGDKGDPGVGERGPPGPQGPPGPPGP 639
Score = 41.6 bits (96), Expect = 0.005
Identities = 37/115 (32%), Positives = 41/115 (35%), Gaps = 21/115 (18%)
Query: 482 GPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSPPLPPGP--PEIVGPQNQAGVLVQPD 539
G G P G PG GPPGLP P SP P GP + GPQ G P
Sbjct: 520 GQKGEPGVPGPPGRAGPPGSPCLPGPPGLPCPVSPLGPAGPALQTVPGPQGPPG---PPG 576
Query: 540 TSLTP--------------PSMGGAYHSPGFPGHVMKVPRENHCSPGSSYQQSPG 580
TP P G PG PG V P+ + PG + PG
Sbjct: 577 RDGTPGRDGEPGDPGEDGKPGDTGPQGFPGTPGDV--GPKGDKGDPGVGERGPPG 629
Score = 40.4 bits (93), Expect = 0.010
Identities = 33/96 (34%), Positives = 37/96 (38%), Gaps = 15/96 (15%)
Query: 473 YSSGSSPGPGPNMSQGHSSPVMHPGSPGH--HPCAGPPGLPVPQSPPL--------PPGP 522
+ S PGP G P +PG PG G PG P PQ PP PPGP
Sbjct: 1112 FFGSSLPGP-----PGPPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQGPPGP 1166
Query: 523 PEIVGPQNQAGVLVQPDTSLTPPSMGGAYHSPGFPG 558
P GP + G Q + PP G PG G
Sbjct: 1167 PGPPGPPSFPGPHRQTISVPGPPGPPGPPGPPGTMG 1202
Score = 38.1 bits (87), Expect = 0.050
Identities = 37/119 (31%), Positives = 45/119 (37%), Gaps = 15/119 (12%)
Query: 441 AHKIGRKPPAFYTSASPPGPQFQGSSPHPQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPG 500
A K + P F PPGP G + I G PG N +G G PG
Sbjct: 959 AQKGAKGEPGF---RGPPGPY--GRPGYKGEIGFPGRPGRPGMNGLKGEK------GEPG 1007
Query: 501 HHPCA-GPPGLPVPQSPPLPPGPPEIVGPQNQAGVLVQPDTSLTPPSMGGAYHSPGFPG 558
G G+P P PP PPGPP P + V + + PP + G PG G
Sbjct: 1008 DASLGFGMRGMPGPPGPPGPPGPPGT--PVYDSNVFAE-SSRPGPPGLPGNQGPPGPKG 1063
Score = 36.6 bits (83), Expect = 0.15
Identities = 38/125 (30%), Positives = 44/125 (35%), Gaps = 15/125 (12%)
Query: 457 PPGPQFQGSSPHPQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHPCAGPPGLP----- 511
PPGP P S GP + ++ P PG PG G PGLP
Sbjct: 776 PPGPPGPPGPGLPAGFDDMEGSGGPFWSTARSADGPQGPPGLPGLKGDPGVPGLPGAKGE 835
Query: 512 -----VPQSPPLPPGPPEIVGPQNQAGVLVQPDTSLTPPSMG----GAYHSPGFPGHVMK 562
VP P L PG I GPQ G P G G PG PG V+
Sbjct: 836 VGADGVPGFPGL-PGREGIAGPQGPKGDRGSRGEKGDPGKDGVGQPGLPGPPGPPGPVVY 894
Query: 563 VPREN 567
V ++
Sbjct: 895 VSEQD 899
Score = 36.6 bits (83), Expect = 0.15
Identities = 26/83 (31%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Query: 479 PGPGPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQS---PPLPPGPPEIVGPQNQAGVL 535
PGP +S+ S + PG G AG PG P+ G P G + + G +
Sbjct: 889 PGPVVYVSEQDGSVLSVPGPEGRPGFAGFPGPAGPKGNLGSKGERGSPGPKGEKGEPGSI 948
Query: 536 VQPDTSLTPPSMGGAYHSPGFPG 558
PD P+ GA PGF G
Sbjct: 949 FSPDGGALGPAQKGAKGEPGFRG 971
Score = 35.8 bits (81), Expect = 0.25
Identities = 39/147 (26%), Positives = 53/147 (36%), Gaps = 50/147 (34%)
Query: 457 PPGPQFQGSSPHPQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHPCAGPPG------- 509
PPGP G+ + ++++ S PGP P + G+ P G+ G GPPG
Sbjct: 1027 PPGPP--GTPVYDSNVFAESSRPGP-PGLP-GNQGPPGPKGAKGEVGPPGPPGQFPFDFL 1082
Query: 510 ----------------------------------LPVPQSPPLPPGPPEIVGPQNQAGVL 535
LP P PP P G P I GP+ ++ +
Sbjct: 1083 QLEAEMKGEKGDRGDAGQKGERGEPGGGGFFGSSLPGPPGPPGPRGYPGIPGPKGES-IR 1141
Query: 536 VQPDT--SLTPPSMG--GAYHSPGFPG 558
QP PP +G G PG PG
Sbjct: 1142 GQPGPPGPQGPPGIGYEGRQGPPGPPG 1168
Score = 34.7 bits (78), Expect = 0.56
Identities = 23/60 (38%), Positives = 25/60 (41%), Gaps = 10/60 (16%)
Query: 481 PGPNMSQGHSSPVMHPGSPGHHPCA-------GPPGLPVPQSPPLPPGPPEIVGPQNQAG 533
PGP G P PG+P + GPPGLP Q PP P G VGP G
Sbjct: 1019 PGPPGPPGPPGP---PGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGEVGPPGPPG 1075
Score = 33.9 bits (76), Expect = 0.95
Identities = 35/111 (31%), Positives = 39/111 (35%), Gaps = 17/111 (15%)
Query: 448 PPAFYTSASPPGPQFQGSSPHPQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHPCAGP 507
PP SP GP + P Q + G PGP G PG PG G
Sbjct: 545 PPGLPCPVSPLGP----AGPALQTV--PGPQGPPGPPGRDGTPGRDGEPGDPGED---GK 595
Query: 508 PGLPVPQSPPLPPGPPEIVGPQNQAGVLVQPDTSLTPPSMGGAYHSPGFPG 558
PG PQ P PG VGP+ G D + G PG PG
Sbjct: 596 PGDTGPQGFPGTPGD---VGPKGDKG-----DPGVGERGPPGPQGPPGPPG 638
>gi|193788659 cleavage and polyadenylation specific factor 4-like
[Homo sapiens]
Length = 179
Score = 55.1 bits (131), Expect = 4e-07
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 8/85 (9%)
Query: 270 VEHKGKQICKYFLEGRCIKGDQCKFDHDAELEKRKEICKFYLQGYCTKGENCIYMH---- 325
++ +C +F +G C KG C F HD ++ +CK +L+G C KG++C ++H
Sbjct: 33 MDKSASAVCNFFTKGLCEKGKLCPFRHDR--GEKMVVCKHWLRGLCKKGDHCKFLHQYDL 90
Query: 326 NEFP-CKFYHSGAKCYQGDNCKFSH 349
P C FY C C F H
Sbjct: 91 TRMPECYFYSKFGDC-SNKECSFLH 114
Score = 51.6 bits (122), Expect = 4e-06
Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 9/79 (11%)
Query: 277 ICKYFLEGRCIKGDQCKFDHDAELEKRKEICKFYLQ-GYCTKGENCIYMH-----NEFPC 330
+CK++L G C KGD CKF H +L + E C FY + G C+ E C ++H C
Sbjct: 67 VCKHWLRGLCKKGDHCKFLHQYDLTRMPE-CYFYSKFGDCSNKE-CSFLHVKPAFKSQDC 124
Query: 331 KFYHSGAKCYQGDNCKFSH 349
+Y G C G CK+ H
Sbjct: 125 PWYDQGF-CKDGPLCKYRH 142
Score = 33.5 bits (75), Expect = 1.2
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 276 QICKYFLEGRCIKGDQCKFDHDAELEKRKEICKFYLQGYCTKGENC 321
Q C ++ +G C G CK+ H + +C YL G+C +G C
Sbjct: 122 QDCPWYDQGFCKDGPLCKYRHVPRI-----MCLNYLVGFCPEGPKC 162
>gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 54.7 bits (130), Expect = 5e-07
Identities = 36/111 (32%), Positives = 46/111 (41%), Gaps = 3/111 (2%)
Query: 449 PAFYTSASPPGPQFQGSSPHPQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHPCAGPP 508
P F PPG + P+ +G PG G P PG PG GPP
Sbjct: 440 PGFLGEVGPPGMRGLPGPIGPKG--EAGQKGVPGLPGVPGLLGPKGEPGIPGDQGLQGPP 497
Query: 509 GLPVPQSPPLPPGPPEIVGPQNQAGVLVQPD-TSLTPPSMGGAYHSPGFPG 558
G+P P P GPP I GP+ + G+ P + P + G + PG PG
Sbjct: 498 GIPGIGGPSGPIGPPGIPGPKGEPGLPGPPGFPGIGKPGVAGLHGPPGKPG 548
Score = 50.1 bits (118), Expect = 1e-05
Identities = 53/209 (25%), Positives = 70/209 (33%), Gaps = 46/209 (22%)
Query: 448 PPAFYTSASPPGPQFQGSSPHPQHIYSSGSSPG-PGPNMSQGHSSPVMH-----PGSPGH 501
PP P GP P P+ PG PGP G P + PG PG
Sbjct: 496 PPGIPGIGGPSGPIGPPGIPGPK------GEPGLPGPPGFPGIGKPGVAGLHGPPGKPGA 549
Query: 502 HPCAGPPGLPVPQSPPLPPGPPEIVGPQNQAGVLVQPDTSLTPPSMGGAYHSPGFPGHVM 561
G PGLP P PP PPGPP ++ P TPP G G +
Sbjct: 550 LGPQGQPGLPGPPGPPGPPGPPAVMPP--------------TPPPQGEYLPDMGLGIDGV 595
Query: 562 KVPR----ENHCSPGSSYQQSPGEMQLNTNYESLQNPAEF-------YDNYYAQHSIHNF 610
K P + + G +Y+ +L + + P +F NY Q I
Sbjct: 596 KPPHAYGAKKGKNGGPAYEMPAFTAELTAPFPPVGAPVKFNKLLYNGRQNYNPQTGIFTC 655
Query: 611 QPP---------NNSGDGMWHGEFAQQQP 630
+ P + G +W F +P
Sbjct: 656 EVPGVYYFAYHVHCKGGNVWVALFKNNEP 684
Score = 43.1 bits (100), Expect = 0.002
Identities = 34/107 (31%), Positives = 42/107 (39%), Gaps = 4/107 (3%)
Query: 457 PPGPQFQGSSPHPQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSP 516
PPG G P G PG +G P+ PG G G PG+P P P
Sbjct: 344 PPGLPGIGKPGFPGPKGDRGMGGVPGALGPRGEKGPIGAPGIGGPPGEPGLPGIPGPMGP 403
Query: 517 PLPPGPPEIVGPQNQAGVLVQPDTSLTPPSMGGAYHSPGFPGHVMKV 563
P G P GP+ + G+ V P P G PG PG + +V
Sbjct: 404 PGAIGFP---GPKGEGGI-VGPQGPPGPKGEPGLQGFPGKPGFLGEV 446
Score = 42.7 bits (99), Expect = 0.002
Identities = 33/100 (33%), Positives = 39/100 (39%), Gaps = 11/100 (11%)
Query: 459 GPQFQGSSPHPQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSPPL 518
GP P P + G PG G P+ PG+PG GP G+P Q PP
Sbjct: 255 GPPGMHGPPGPVGLPGVGK---PGVTGFPGPQGPLGKPGAPGEPGPQGPIGVPGVQGPPG 311
Query: 519 PPGPPEIVGPQNQAGVLVQPDTSLTPPSMGGAYHSPGFPG 558
PG +G Q G+ QP P G PG PG
Sbjct: 312 IPG----IGKPGQDGIPGQPGF----PGGKGEQGLPGLPG 343
Score = 38.5 bits (88), Expect = 0.039
Identities = 44/141 (31%), Positives = 49/141 (34%), Gaps = 28/141 (19%)
Query: 458 PGPQFQGSSPHPQHIYSSGSSPGPGPNMSQGHSSPVMH--PGSPGHH--PCA-------- 505
PGP+ P G PGP G P M PG PG P A
Sbjct: 126 PGPRGPPGPPGLPGHGIPGIKGKPGPQGYPGVGKPGMPGMPGKPGAMGMPGAKGEIGQKG 185
Query: 506 --GPPGLPVPQSPPLP-----------PGPPEIVGPQNQAGVLVQP-DTSLTPPSMGGAY 551
GP G+P PQ PP P PG P GP+ G P L P +
Sbjct: 186 EIGPMGIPGPQGPPGPHGLPGIGKPGGPGLPGQPGPKGDRGPKGLPGPQGLRGPKGDKGF 245
Query: 552 HSPGFPGHVMKVPRENHCSPG 572
PG PG +K P H PG
Sbjct: 246 GMPGAPG--VKGPPGMHGPPG 264
Score = 38.5 bits (88), Expect = 0.039
Identities = 32/103 (31%), Positives = 37/103 (35%), Gaps = 2/103 (1%)
Query: 457 PPGPQFQGSSPHPQHIYSSGSSPGP-GPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQS 515
PPG P P + PGP G G P G PG G PG
Sbjct: 388 PPGEPGLPGIPGPMGPPGAIGFPGPKGEGGIVGPQGPPGPKGEPGLQGFPGKPGFLGEVG 447
Query: 516 PPLPPGPPEIVGPQNQAGVLVQPDTSLTPPSMGGAYHSPGFPG 558
PP G P +GP+ +AG P P + G PG PG
Sbjct: 448 PPGMRGLPGPIGPKGEAGQKGVPGLP-GVPGLLGPKGEPGIPG 489
Score = 38.1 bits (87), Expect = 0.050
Identities = 36/113 (31%), Positives = 42/113 (37%), Gaps = 19/113 (16%)
Query: 457 PPGPQFQGSSPHPQHIYSSGSSPGP----GPNMSQGHSSPVMHPGSPGHHPCAGPPGLPV 512
P GP G P P+ PGP GP +G P G+PG GPPG+
Sbjct: 210 PGGPGLPGQ-PGPKGDRGPKGLPGPQGLRGPKGDKGFGMP----GAPG---VKGPPGMHG 261
Query: 513 PQSPPLPP--GPPEIVGPQNQAGVLVQPDTSLTPPSMG-----GAYHSPGFPG 558
P P P G P + G G L +P P G G PG PG
Sbjct: 262 PPGPVGLPGVGKPGVTGFPGPQGPLGKPGAPGEPGPQGPIGVPGVQGPPGIPG 314
Score = 35.4 bits (80), Expect = 0.33
Identities = 37/123 (30%), Positives = 43/123 (34%), Gaps = 28/123 (22%)
Query: 458 PGPQFQGSSPHPQHIYSSGSSPGP----------GPNMSQGHSSPVMH--PGSPGHHPCA 505
PGPQ P + PGP GP G P PG PG
Sbjct: 280 PGPQGPLGKP------GAPGEPGPQGPIGVPGVQGPPGIPGIGKPGQDGIPGQPGFPGGK 333
Query: 506 GPPGLP-VPQSPPLPP-GPPEIVGPQNQAGVLVQPDT--------SLTPPSMGGAYHSPG 555
G GLP +P P LP G P GP+ G+ P + P +GG PG
Sbjct: 334 GEQGLPGLPGPPGLPGIGKPGFPGPKGDRGMGGVPGALGPRGEKGPIGAPGIGGPPGEPG 393
Query: 556 FPG 558
PG
Sbjct: 394 LPG 396
Score = 31.6 bits (70), Expect = 4.7
Identities = 31/118 (26%), Positives = 44/118 (37%), Gaps = 7/118 (5%)
Query: 458 PGPQFQGSSPH-PQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSP 516
P Q+ PH PQ++ +P G + G GP G P P+ P
Sbjct: 75 PHLQYGKEYPHLPQYMKEIQPAPRMGKEAVPKKGKEIPLASLRGEQ---GPRGEPGPRGP 131
Query: 517 PLPPGPP--EIVGPQNQAGVLVQPDTSLT-PPSMGGAYHSPGFPGHVMKVPRENHCSP 571
P PPG P I G + + G P P M G + G PG ++ ++ P
Sbjct: 132 PGPPGLPGHGIPGIKGKPGPQGYPGVGKPGMPGMPGKPGAMGMPGAKGEIGQKGEIGP 189
>gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 54.7 bits (130), Expect = 5e-07
Identities = 36/111 (32%), Positives = 46/111 (41%), Gaps = 3/111 (2%)
Query: 449 PAFYTSASPPGPQFQGSSPHPQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHPCAGPP 508
P F PPG + P+ +G PG G P PG PG GPP
Sbjct: 440 PGFLGEVGPPGMRGLPGPIGPKG--EAGQKGVPGLPGVPGLLGPKGEPGIPGDQGLQGPP 497
Query: 509 GLPVPQSPPLPPGPPEIVGPQNQAGVLVQPD-TSLTPPSMGGAYHSPGFPG 558
G+P P P GPP I GP+ + G+ P + P + G + PG PG
Sbjct: 498 GIPGIGGPSGPIGPPGIPGPKGEPGLPGPPGFPGIGKPGVAGLHGPPGKPG 548
Score = 50.1 bits (118), Expect = 1e-05
Identities = 53/209 (25%), Positives = 70/209 (33%), Gaps = 46/209 (22%)
Query: 448 PPAFYTSASPPGPQFQGSSPHPQHIYSSGSSPG-PGPNMSQGHSSPVMH-----PGSPGH 501
PP P GP P P+ PG PGP G P + PG PG
Sbjct: 496 PPGIPGIGGPSGPIGPPGIPGPK------GEPGLPGPPGFPGIGKPGVAGLHGPPGKPGA 549
Query: 502 HPCAGPPGLPVPQSPPLPPGPPEIVGPQNQAGVLVQPDTSLTPPSMGGAYHSPGFPGHVM 561
G PGLP P PP PPGPP ++ P TPP G G +
Sbjct: 550 LGPQGQPGLPGPPGPPGPPGPPAVMPP--------------TPPPQGEYLPDMGLGIDGV 595
Query: 562 KVPR----ENHCSPGSSYQQSPGEMQLNTNYESLQNPAEF-------YDNYYAQHSIHNF 610
K P + + G +Y+ +L + + P +F NY Q I
Sbjct: 596 KPPHAYGAKKGKNGGPAYEMPAFTAELTAPFPPVGAPVKFNKLLYNGRQNYNPQTGIFTC 655
Query: 611 QPP---------NNSGDGMWHGEFAQQQP 630
+ P + G +W F +P
Sbjct: 656 EVPGVYYFAYHVHCKGGNVWVALFKNNEP 684
Score = 43.1 bits (100), Expect = 0.002
Identities = 34/107 (31%), Positives = 42/107 (39%), Gaps = 4/107 (3%)
Query: 457 PPGPQFQGSSPHPQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSP 516
PPG G P G PG +G P+ PG G G PG+P P P
Sbjct: 344 PPGLPGIGKPGFPGPKGDRGMGGVPGALGPRGEKGPIGAPGIGGPPGEPGLPGIPGPMGP 403
Query: 517 PLPPGPPEIVGPQNQAGVLVQPDTSLTPPSMGGAYHSPGFPGHVMKV 563
P G P GP+ + G+ V P P G PG PG + +V
Sbjct: 404 PGAIGFP---GPKGEGGI-VGPQGPPGPKGEPGLQGFPGKPGFLGEV 446
Score = 42.7 bits (99), Expect = 0.002
Identities = 33/100 (33%), Positives = 39/100 (39%), Gaps = 11/100 (11%)
Query: 459 GPQFQGSSPHPQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSPPL 518
GP P P + G PG G P+ PG+PG GP G+P Q PP
Sbjct: 255 GPPGMHGPPGPVGLPGVGK---PGVTGFPGPQGPLGKPGAPGEPGPQGPIGVPGVQGPPG 311
Query: 519 PPGPPEIVGPQNQAGVLVQPDTSLTPPSMGGAYHSPGFPG 558
PG +G Q G+ QP P G PG PG
Sbjct: 312 IPG----IGKPGQDGIPGQPGF----PGGKGEQGLPGLPG 343
Score = 38.5 bits (88), Expect = 0.039
Identities = 44/141 (31%), Positives = 49/141 (34%), Gaps = 28/141 (19%)
Query: 458 PGPQFQGSSPHPQHIYSSGSSPGPGPNMSQGHSSPVMH--PGSPGHH--PCA-------- 505
PGP+ P G PGP G P M PG PG P A
Sbjct: 126 PGPRGPPGPPGLPGHGIPGIKGKPGPQGYPGVGKPGMPGMPGKPGAMGMPGAKGEIGQKG 185
Query: 506 --GPPGLPVPQSPPLP-----------PGPPEIVGPQNQAGVLVQP-DTSLTPPSMGGAY 551
GP G+P PQ PP P PG P GP+ G P L P +
Sbjct: 186 EIGPMGIPGPQGPPGPHGLPGIGKPGGPGLPGQPGPKGDRGPKGLPGPQGLRGPKGDKGF 245
Query: 552 HSPGFPGHVMKVPRENHCSPG 572
PG PG +K P H PG
Sbjct: 246 GMPGAPG--VKGPPGMHGPPG 264
Score = 38.5 bits (88), Expect = 0.039
Identities = 32/103 (31%), Positives = 37/103 (35%), Gaps = 2/103 (1%)
Query: 457 PPGPQFQGSSPHPQHIYSSGSSPGP-GPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQS 515
PPG P P + PGP G G P G PG G PG
Sbjct: 388 PPGEPGLPGIPGPMGPPGAIGFPGPKGEGGIVGPQGPPGPKGEPGLQGFPGKPGFLGEVG 447
Query: 516 PPLPPGPPEIVGPQNQAGVLVQPDTSLTPPSMGGAYHSPGFPG 558
PP G P +GP+ +AG P P + G PG PG
Sbjct: 448 PPGMRGLPGPIGPKGEAGQKGVPGLP-GVPGLLGPKGEPGIPG 489
Score = 38.1 bits (87), Expect = 0.050
Identities = 36/113 (31%), Positives = 42/113 (37%), Gaps = 19/113 (16%)
Query: 457 PPGPQFQGSSPHPQHIYSSGSSPGP----GPNMSQGHSSPVMHPGSPGHHPCAGPPGLPV 512
P GP G P P+ PGP GP +G P G+PG GPPG+
Sbjct: 210 PGGPGLPGQ-PGPKGDRGPKGLPGPQGLRGPKGDKGFGMP----GAPG---VKGPPGMHG 261
Query: 513 PQSPPLPP--GPPEIVGPQNQAGVLVQPDTSLTPPSMG-----GAYHSPGFPG 558
P P P G P + G G L +P P G G PG PG
Sbjct: 262 PPGPVGLPGVGKPGVTGFPGPQGPLGKPGAPGEPGPQGPIGVPGVQGPPGIPG 314
Score = 35.4 bits (80), Expect = 0.33
Identities = 37/123 (30%), Positives = 43/123 (34%), Gaps = 28/123 (22%)
Query: 458 PGPQFQGSSPHPQHIYSSGSSPGP----------GPNMSQGHSSPVMH--PGSPGHHPCA 505
PGPQ P + PGP GP G P PG PG
Sbjct: 280 PGPQGPLGKP------GAPGEPGPQGPIGVPGVQGPPGIPGIGKPGQDGIPGQPGFPGGK 333
Query: 506 GPPGLP-VPQSPPLPP-GPPEIVGPQNQAGVLVQPDT--------SLTPPSMGGAYHSPG 555
G GLP +P P LP G P GP+ G+ P + P +GG PG
Sbjct: 334 GEQGLPGLPGPPGLPGIGKPGFPGPKGDRGMGGVPGALGPRGEKGPIGAPGIGGPPGEPG 393
Query: 556 FPG 558
PG
Sbjct: 394 LPG 396
Score = 31.6 bits (70), Expect = 4.7
Identities = 31/118 (26%), Positives = 44/118 (37%), Gaps = 7/118 (5%)
Query: 458 PGPQFQGSSPH-PQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSP 516
P Q+ PH PQ++ +P G + G GP G P P+ P
Sbjct: 75 PHLQYGKEYPHLPQYMKEIQPAPRMGKEAVPKKGKEIPLASLRGEQ---GPRGEPGPRGP 131
Query: 517 PLPPGPP--EIVGPQNQAGVLVQPDTSLT-PPSMGGAYHSPGFPGHVMKVPRENHCSP 571
P PPG P I G + + G P P M G + G PG ++ ++ P
Sbjct: 132 PGPPGLPGHGIPGIKGKPGPQGYPGVGKPGMPGMPGKPGAMGMPGAKGEIGQKGEIGP 189
>gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens]
Length = 717
Score = 54.3 bits (129), Expect = 7e-07
Identities = 30/84 (35%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 457 PPGPQFQGSSPHPQHIYSSGSSPG-PGPNMSQGHSSPVMHPGSPGH-----HPCAGPPGL 510
PPGPQ P + PG PG +G + PG G +P A PGL
Sbjct: 510 PPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGL 569
Query: 511 PVPQSPPLPPGPPEIVGPQNQAGV 534
P P+ PP PPG + GP+ +AG+
Sbjct: 570 PGPEGPPGPPGLQGVPGPKGEAGL 593
Score = 42.7 bits (99), Expect = 0.002
Identities = 42/156 (26%), Positives = 57/156 (36%), Gaps = 32/156 (20%)
Query: 431 EIVVKPTVDLAHKIGRKPPAFYTSASPPGPQFQGSSPHPQHIYSSGSSPGPGPNMSQGHS 490
+I+ + L + + PP + G Q Q S P PGP
Sbjct: 233 QIIALKLLPLLNSVRLAPPPVIKRRTFQGEQSQASIQGP-----------PGP------- 274
Query: 491 SPVMHPGSPGHHPCAGPPGLPVPQSPPLPPGPPEIVGPQNQAGVLVQPDT--SLTPPSMG 548
PG PG G PGLP P PP PGPP GP+ G+ P M
Sbjct: 275 -----PGPPGPSGPLGHPGLPGPMGPPGLPGPP---GPKGDPGIQGYHGRKGERGMPGMP 326
Query: 549 GAYHSPGFPGHVMKVPRENHCSPGSSYQQ----SPG 580
G + + G PG + + PG+ ++ SPG
Sbjct: 327 GKHGAKGAPGIAVAGMKGEPGIPGTKGEKGAEGSPG 362
Score = 41.2 bits (95), Expect = 0.006
Identities = 32/102 (31%), Positives = 38/102 (37%), Gaps = 7/102 (6%)
Query: 481 PGPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSPPLPPGPPEIVGPQNQAGVLVQPDT 540
PG G + PG PGH GP G P PP P GPP GP G P
Sbjct: 475 PGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGENGHPG- 533
Query: 541 SLTPPSMG--GAYHSPGFPGHVMKVPRENHCSPGSSYQQSPG 580
+P G G G PG + + +PG+ PG
Sbjct: 534 --SPGEKGEKGETGQAGSPGEKGEAGEKG--NPGAEVPGLPG 571
Score = 40.8 bits (94), Expect = 0.008
Identities = 30/100 (30%), Positives = 38/100 (38%), Gaps = 10/100 (10%)
Query: 445 GRKPPAFYTSASPPGPQFQGSSPHPQ-HIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHP 503
G + P PPGP P P+ G+ G +G P+ PG+ G
Sbjct: 563 GAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDG 622
Query: 504 CAGPPGLPVPQSPPLPPGP---------PEIVGPQNQAGV 534
GPPG P P P P GP P + GP AG+
Sbjct: 623 RPGPPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGL 662
Score = 36.6 bits (83), Expect = 0.15
Identities = 26/77 (33%), Positives = 28/77 (36%), Gaps = 4/77 (5%)
Query: 482 GPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSPPLPPGPPEIVGPQNQAGVLVQPDTS 541
GP G P PG PG G PG P P G P +GP G P
Sbjct: 464 GPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQG----PPGK 519
Query: 542 LTPPSMGGAYHSPGFPG 558
PP + G PG PG
Sbjct: 520 DGPPGVKGENGHPGSPG 536
Score = 36.6 bits (83), Expect = 0.15
Identities = 22/65 (33%), Positives = 24/65 (36%)
Query: 469 PQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSPPLPPGPPEIVGP 528
P I G+ PG G P H G G G G P PQ PP GPP + G
Sbjct: 469 PGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGE 528
Query: 529 QNQAG 533
G
Sbjct: 529 NGHPG 533
Score = 36.2 bits (82), Expect = 0.19
Identities = 29/87 (33%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Query: 479 PGP-GPNMSQGHSSPVMHPGSP---GHHPCAGPPGLPVPQSPPLPPGPPEIV---GPQNQ 531
PGP GP G V PG P G AG G P+ PG E+V G N+
Sbjct: 393 PGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPDGPKGSKGEPGKGEMVDYNGNINE 452
Query: 532 AGVLVQPDTSLTPPSMGGAYHSPGFPG 558
A ++ + PP + G PG PG
Sbjct: 453 ALQEIRTLALMGPPGLPGQIGPPGAPG 479
Score = 35.0 bits (79), Expect = 0.43
Identities = 28/86 (32%), Positives = 31/86 (36%), Gaps = 9/86 (10%)
Query: 457 PPGPQFQGSSPHPQHIYSSGS---SPGP------GPNMSQGHSSPVMHPGSPGHHPCAGP 507
PPGP + P + SPG GP G PG PG G
Sbjct: 123 PPGPTGRPGLPGDKGAIGMPGRVGSPGDAGLSIIGPRGPPGQPGTRGFPGFPGPIGLDGK 182
Query: 508 PGLPVPQSPPLPPGPPEIVGPQNQAG 533
PG P P+ GPP GPQ Q G
Sbjct: 183 PGHPGPKGDMGLTGPPGQPGPQGQKG 208
Score = 33.9 bits (76), Expect = 0.95
Identities = 27/92 (29%), Positives = 32/92 (34%), Gaps = 19/92 (20%)
Query: 481 PGPNMSQGHSSPVMHPGSPGHHPCAGPPG-LPVPQSPPLPPGPPEIVGPQNQAGVLVQPD 539
PG N G P PG PG G PG + P L I+GP+
Sbjct: 115 PGCNCPPGPPGPTGRPGLPGDKGAIGMPGRVGSPGDAGL-----SIIGPRG--------- 160
Query: 540 TSLTPPSMGGAYHSPGFPGHVMKVPRENHCSP 571
PP G PGFPG + + H P
Sbjct: 161 ----PPGQPGTRGFPGFPGPIGLDGKPGHPGP 188
Score = 32.3 bits (72), Expect = 2.8
Identities = 34/129 (26%), Positives = 45/129 (34%), Gaps = 32/129 (24%)
Query: 457 PPGPQF----------QGSSPHPQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHPCAG 506
PPGP+ +G P G+ PG ++ P + PG+ G G
Sbjct: 301 PPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGI-PGTKGEKGAEG 359
Query: 507 PPGLPV-----------------PQSPPLPPGPPEIVGPQNQAGVLVQPDTSLTPPSMGG 549
PGLP + P PPG P GP+ +AGV D + PP G
Sbjct: 360 SPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGV----DGQVGPPGQPG 415
Query: 550 AYHSPGFPG 558
G G
Sbjct: 416 DKGERGAAG 424
>gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens]
Length = 655
Score = 54.3 bits (129), Expect = 7e-07
Identities = 30/84 (35%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 457 PPGPQFQGSSPHPQHIYSSGSSPG-PGPNMSQGHSSPVMHPGSPGH-----HPCAGPPGL 510
PPGPQ P + PG PG +G + PG G +P A PGL
Sbjct: 448 PPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGL 507
Query: 511 PVPQSPPLPPGPPEIVGPQNQAGV 534
P P+ PP PPG + GP+ +AG+
Sbjct: 508 PGPEGPPGPPGLQGVPGPKGEAGL 531
Score = 45.4 bits (106), Expect = 3e-04
Identities = 39/129 (30%), Positives = 48/129 (37%), Gaps = 14/129 (10%)
Query: 458 PGPQFQGSSPHPQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSPP 517
PGPQ Q G P G P PG PG G PGLP P PP
Sbjct: 180 PGPQGQKGEKG-----QCGEYPHRGEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPP 234
Query: 518 LPPGPPEIVGPQNQAGVLVQPDT--SLTPPSMGGAYHSPGFPGHVMKVPRENHCSPGSSY 575
PGPP GP+ G+ P M G + + G PG + + PG+
Sbjct: 235 GLPGPP---GPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGTKG 291
Query: 576 QQ----SPG 580
++ SPG
Sbjct: 292 EKGAEGSPG 300
Score = 44.7 bits (104), Expect = 5e-04
Identities = 35/112 (31%), Positives = 41/112 (36%), Gaps = 14/112 (12%)
Query: 457 PPG-PQFQGSSPHPQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGH---------HPCAG 506
PPG P +G P I G PGP G + P PG G +P G
Sbjct: 140 PPGQPGTRGFPGFPGPIGLDGKPGHPGPKGDMGLTGPPGQPGPQGQKGEKGQCGEYPHRG 199
Query: 507 PPGLPVPQSPPLPPGPPEIVGPQNQAGVLVQPDTSLTPPSMGGAYHSPGFPG 558
Q PP PPGPP GP G+ + PP + G G PG
Sbjct: 200 EQSQASIQGPPGPPGPPGPSGPLGHPGL----PGPMGPPGLPGPPGPKGDPG 247
Score = 41.2 bits (95), Expect = 0.006
Identities = 32/102 (31%), Positives = 38/102 (37%), Gaps = 7/102 (6%)
Query: 481 PGPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSPPLPPGPPEIVGPQNQAGVLVQPDT 540
PG G + PG PGH GP G P PP P GPP GP G P
Sbjct: 413 PGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGENGHPG- 471
Query: 541 SLTPPSMG--GAYHSPGFPGHVMKVPRENHCSPGSSYQQSPG 580
+P G G G PG + + +PG+ PG
Sbjct: 472 --SPGEKGEKGETGQAGSPGEKGEAGEKG--NPGAEVPGLPG 509
Score = 40.8 bits (94), Expect = 0.008
Identities = 30/100 (30%), Positives = 38/100 (38%), Gaps = 10/100 (10%)
Query: 445 GRKPPAFYTSASPPGPQFQGSSPHPQ-HIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHP 503
G + P PPGP P P+ G+ G +G P+ PG+ G
Sbjct: 501 GAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDG 560
Query: 504 CAGPPGLPVPQSPPLPPGP---------PEIVGPQNQAGV 534
GPPG P P P P GP P + GP AG+
Sbjct: 561 RPGPPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGL 600
Score = 38.5 bits (88), Expect = 0.039
Identities = 36/119 (30%), Positives = 40/119 (33%), Gaps = 26/119 (21%)
Query: 457 PPGPQFQGSSPHPQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSP 516
PP PQ SP + G PG ++G PG PG G PG P P+
Sbjct: 120 PPAPQ---GSPGDAGLSIIGPRGPPGQPGTRGF------PGFPGPIGLDGKPGHPGPKGD 170
Query: 517 PLPPGPPEIVGPQNQAGVLVQ-----------------PDTSLTPPSMGGAYHSPGFPG 558
GPP GPQ Q G Q P PP G PG PG
Sbjct: 171 MGLTGPPGQPGPQGQKGEKGQCGEYPHRGEQSQASIQGPPGPPGPPGPSGPLGHPGLPG 229
Score = 36.6 bits (83), Expect = 0.15
Identities = 26/77 (33%), Positives = 28/77 (36%), Gaps = 4/77 (5%)
Query: 482 GPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSPPLPPGPPEIVGPQNQAGVLVQPDTS 541
GP G P PG PG G PG P P G P +GP G P
Sbjct: 402 GPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQG----PPGK 457
Query: 542 LTPPSMGGAYHSPGFPG 558
PP + G PG PG
Sbjct: 458 DGPPGVKGENGHPGSPG 474
Score = 36.6 bits (83), Expect = 0.15
Identities = 22/65 (33%), Positives = 24/65 (36%)
Query: 469 PQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSPPLPPGPPEIVGP 528
P I G+ PG G P H G G G G P PQ PP GPP + G
Sbjct: 407 PGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGE 466
Query: 529 QNQAG 533
G
Sbjct: 467 NGHPG 471
Score = 36.2 bits (82), Expect = 0.19
Identities = 29/87 (33%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Query: 479 PGP-GPNMSQGHSSPVMHPGSP---GHHPCAGPPGLPVPQSPPLPPGPPEIV---GPQNQ 531
PGP GP G V PG P G AG G P+ PG E+V G N+
Sbjct: 331 PGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPDGPKGSKGEPGKGEMVDYNGNINE 390
Query: 532 AGVLVQPDTSLTPPSMGGAYHSPGFPG 558
A ++ + PP + G PG PG
Sbjct: 391 ALQEIRTLALMGPPGLPGQIGPPGAPG 417
Score = 32.3 bits (72), Expect = 2.8
Identities = 34/129 (26%), Positives = 45/129 (34%), Gaps = 32/129 (24%)
Query: 457 PPGPQF----------QGSSPHPQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHPCAG 506
PPGP+ +G P G+ PG ++ P + PG+ G G
Sbjct: 239 PPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGI-PGTKGEKGAEG 297
Query: 507 PPGLPV-----------------PQSPPLPPGPPEIVGPQNQAGVLVQPDTSLTPPSMGG 549
PGLP + P PPG P GP+ +AGV D + PP G
Sbjct: 298 SPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGV----DGQVGPPGQPG 353
Query: 550 AYHSPGFPG 558
G G
Sbjct: 354 DKGERGAAG 362
>gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens]
Length = 657
Score = 54.3 bits (129), Expect = 7e-07
Identities = 30/84 (35%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 457 PPGPQFQGSSPHPQHIYSSGSSPG-PGPNMSQGHSSPVMHPGSPGH-----HPCAGPPGL 510
PPGPQ P + PG PG +G + PG G +P A PGL
Sbjct: 450 PPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGL 509
Query: 511 PVPQSPPLPPGPPEIVGPQNQAGV 534
P P+ PP PPG + GP+ +AG+
Sbjct: 510 PGPEGPPGPPGLQGVPGPKGEAGL 533
Score = 44.7 bits (104), Expect = 5e-04
Identities = 43/143 (30%), Positives = 53/143 (37%), Gaps = 23/143 (16%)
Query: 458 PGPQFQ-------GSSPH-------PQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHP 503
PGPQ Q G PH P + SS G P PG PG
Sbjct: 163 PGPQGQKGEKGQCGEYPHRECLSSMPAALRSSQIIALKGEQSQASIQGPPGPPGPPGPSG 222
Query: 504 CAGPPGLPVPQSPPLPPGPPEIVGPQNQAGVLVQPDT--SLTPPSMGGAYHSPGFPGHVM 561
G PGLP P PP PGPP GP+ G+ P M G + + G PG +
Sbjct: 223 PLGHPGLPGPMGPPGLPGPP---GPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAV 279
Query: 562 KVPRENHCSPGSSYQQ----SPG 580
+ PG+ ++ SPG
Sbjct: 280 AGMKGEPGIPGTKGEKGAEGSPG 302
Score = 41.2 bits (95), Expect = 0.006
Identities = 32/102 (31%), Positives = 38/102 (37%), Gaps = 7/102 (6%)
Query: 481 PGPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSPPLPPGPPEIVGPQNQAGVLVQPDT 540
PG G + PG PGH GP G P PP P GPP GP G P
Sbjct: 415 PGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGENGHPG- 473
Query: 541 SLTPPSMG--GAYHSPGFPGHVMKVPRENHCSPGSSYQQSPG 580
+P G G G PG + + +PG+ PG
Sbjct: 474 --SPGEKGEKGETGQAGSPGEKGEAGEKG--NPGAEVPGLPG 511
Score = 40.8 bits (94), Expect = 0.008
Identities = 30/100 (30%), Positives = 38/100 (38%), Gaps = 10/100 (10%)
Query: 445 GRKPPAFYTSASPPGPQFQGSSPHPQ-HIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHP 503
G + P PPGP P P+ G+ G +G P+ PG+ G
Sbjct: 503 GAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDG 562
Query: 504 CAGPPGLPVPQSPPLPPGP---------PEIVGPQNQAGV 534
GPPG P P P P GP P + GP AG+
Sbjct: 563 RPGPPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGL 602
Score = 36.6 bits (83), Expect = 0.15
Identities = 26/77 (33%), Positives = 28/77 (36%), Gaps = 4/77 (5%)
Query: 482 GPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSPPLPPGPPEIVGPQNQAGVLVQPDTS 541
GP G P PG PG G PG P P G P +GP G P
Sbjct: 404 GPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQG----PPGK 459
Query: 542 LTPPSMGGAYHSPGFPG 558
PP + G PG PG
Sbjct: 460 DGPPGVKGENGHPGSPG 476
Score = 36.6 bits (83), Expect = 0.15
Identities = 22/65 (33%), Positives = 24/65 (36%)
Query: 469 PQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSPPLPPGPPEIVGP 528
P I G+ PG G P H G G G G P PQ PP GPP + G
Sbjct: 409 PGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGE 468
Query: 529 QNQAG 533
G
Sbjct: 469 NGHPG 473
Score = 36.2 bits (82), Expect = 0.19
Identities = 39/153 (25%), Positives = 43/153 (28%), Gaps = 47/153 (30%)
Query: 448 PPAFYTSASPPGPQFQGSSPHPQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPG------- 500
PP F P +G P I G PGP G + P PG G
Sbjct: 120 PPVFQGQ-----PGTRGFPGFPGPIGLDGKPGHPGPKGDMGLTGPPGQPGPQGQKGEKGQ 174
Query: 501 -----HHPC-------------------------AGPPGLPVPQSPPLPPGPPEIVGPQN 530
H C GPPG P P P P G P + GP
Sbjct: 175 CGEYPHRECLSSMPAALRSSQIIALKGEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMG 234
Query: 531 QAGVLVQPDTSLTPPSMG-----GAYHSPGFPG 558
G+ P P G G PG PG
Sbjct: 235 PPGLPGPPGPKGDPGIQGYHGRKGERGMPGMPG 267
Score = 36.2 bits (82), Expect = 0.19
Identities = 29/87 (33%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Query: 479 PGP-GPNMSQGHSSPVMHPGSP---GHHPCAGPPGLPVPQSPPLPPGPPEIV---GPQNQ 531
PGP GP G V PG P G AG G P+ PG E+V G N+
Sbjct: 333 PGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPDGPKGSKGEPGKGEMVDYNGNINE 392
Query: 532 AGVLVQPDTSLTPPSMGGAYHSPGFPG 558
A ++ + PP + G PG PG
Sbjct: 393 ALQEIRTLALMGPPGLPGQIGPPGAPG 419
Score = 35.4 bits (80), Expect = 0.33
Identities = 23/58 (39%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 477 SSPGPG-PNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSPPLPPGPPEIVGPQNQAG 533
+SPG P + QG PG PG G PG P P+ GPP GPQ Q G
Sbjct: 113 TSPGCNCPPVFQGQPGTRGFPGFPGPIGLDGKPGHPGPKGDMGLTGPPGQPGPQGQKG 170
Score = 32.3 bits (72), Expect = 2.8
Identities = 34/129 (26%), Positives = 45/129 (34%), Gaps = 32/129 (24%)
Query: 457 PPGPQF----------QGSSPHPQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHPCAG 506
PPGP+ +G P G+ PG ++ P + PG+ G G
Sbjct: 241 PPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGI-PGTKGEKGAEG 299
Query: 507 PPGLPV-----------------PQSPPLPPGPPEIVGPQNQAGVLVQPDTSLTPPSMGG 549
PGLP + P PPG P GP+ +AGV D + PP G
Sbjct: 300 SPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGV----DGQVGPPGQPG 355
Query: 550 AYHSPGFPG 558
G G
Sbjct: 356 DKGERGAAG 364
>gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens]
Length = 660
Score = 54.3 bits (129), Expect = 7e-07
Identities = 30/84 (35%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 457 PPGPQFQGSSPHPQHIYSSGSSPG-PGPNMSQGHSSPVMHPGSPGH-----HPCAGPPGL 510
PPGPQ P + PG PG +G + PG G +P A PGL
Sbjct: 453 PPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGL 512
Query: 511 PVPQSPPLPPGPPEIVGPQNQAGV 534
P P+ PP PPG + GP+ +AG+
Sbjct: 513 PGPEGPPGPPGLQGVPGPKGEAGL 536
Score = 42.0 bits (97), Expect = 0.003
Identities = 44/146 (30%), Positives = 55/146 (37%), Gaps = 26/146 (17%)
Query: 458 PGPQFQ-------GSSPHPQHIYSSGSSPGPGPNMS----QGHSS------PVMHPGSPG 500
PGPQ Q G PH + P P + QG S P PG PG
Sbjct: 163 PGPQGQKGEKGQCGEYPHRLLPLLNSVRLAPPPVIKRRTFQGEQSQASIQGPPGPPGPPG 222
Query: 501 HHPCAGPPGLPVPQSPPLPPGPPEIVGPQNQAGVLVQPDT--SLTPPSMGGAYHSPGFPG 558
G PGLP P PP PGPP GP+ G+ P M G + + G PG
Sbjct: 223 PSGPLGHPGLPGPMGPPGLPGPP---GPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPG 279
Query: 559 HVMKVPRENHCSPGSSYQQ----SPG 580
+ + PG+ ++ SPG
Sbjct: 280 IAVAGMKGEPGIPGTKGEKGAEGSPG 305
Score = 41.2 bits (95), Expect = 0.006
Identities = 32/102 (31%), Positives = 38/102 (37%), Gaps = 7/102 (6%)
Query: 481 PGPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSPPLPPGPPEIVGPQNQAGVLVQPDT 540
PG G + PG PGH GP G P PP P GPP GP G P
Sbjct: 418 PGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGENGHPG- 476
Query: 541 SLTPPSMG--GAYHSPGFPGHVMKVPRENHCSPGSSYQQSPG 580
+P G G G PG + + +PG+ PG
Sbjct: 477 --SPGEKGEKGETGQAGSPGEKGEAGEKG--NPGAEVPGLPG 514
Score = 40.8 bits (94), Expect = 0.008
Identities = 30/100 (30%), Positives = 38/100 (38%), Gaps = 10/100 (10%)
Query: 445 GRKPPAFYTSASPPGPQFQGSSPHPQ-HIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHP 503
G + P PPGP P P+ G+ G +G P+ PG+ G
Sbjct: 506 GAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDG 565
Query: 504 CAGPPGLPVPQSPPLPPGP---------PEIVGPQNQAGV 534
GPPG P P P P GP P + GP AG+
Sbjct: 566 RPGPPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGL 605
Score = 36.6 bits (83), Expect = 0.15
Identities = 26/77 (33%), Positives = 28/77 (36%), Gaps = 4/77 (5%)
Query: 482 GPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSPPLPPGPPEIVGPQNQAGVLVQPDTS 541
GP G P PG PG G PG P P G P +GP G P
Sbjct: 407 GPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQG----PPGK 462
Query: 542 LTPPSMGGAYHSPGFPG 558
PP + G PG PG
Sbjct: 463 DGPPGVKGENGHPGSPG 479
Score = 36.6 bits (83), Expect = 0.15
Identities = 22/65 (33%), Positives = 24/65 (36%)
Query: 469 PQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSPPLPPGPPEIVGP 528
P I G+ PG G P H G G G G P PQ PP GPP + G
Sbjct: 412 PGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGE 471
Query: 529 QNQAG 533
G
Sbjct: 472 NGHPG 476
Score = 36.2 bits (82), Expect = 0.19
Identities = 38/122 (31%), Positives = 43/122 (35%), Gaps = 18/122 (14%)
Query: 448 PPAFYTSASPPGPQFQGSSPHPQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHPCAGP 507
PP F P +G P I G PGP G + P PG G G
Sbjct: 120 PPVFQGQ-----PGTRGFPGFPGPIGLDGKPGHPGPKGDMGLTGPPGQPGPQGQKGEKGQ 174
Query: 508 PG------LPVPQSPPLPPGPPEI-----VGPQNQAGVLVQPDTSLTPPSMGGAYHSPGF 556
G LP+ S L P PP I G Q+QA + P PP G PG
Sbjct: 175 CGEYPHRLLPLLNSVRLAP-PPVIKRRTFQGEQSQASIQGPPGPP-GPPGPSGPLGHPGL 232
Query: 557 PG 558
PG
Sbjct: 233 PG 234
Score = 36.2 bits (82), Expect = 0.19
Identities = 29/87 (33%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Query: 479 PGP-GPNMSQGHSSPVMHPGSP---GHHPCAGPPGLPVPQSPPLPPGPPEIV---GPQNQ 531
PGP GP G V PG P G AG G P+ PG E+V G N+
Sbjct: 336 PGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPDGPKGSKGEPGKGEMVDYNGNINE 395
Query: 532 AGVLVQPDTSLTPPSMGGAYHSPGFPG 558
A ++ + PP + G PG PG
Sbjct: 396 ALQEIRTLALMGPPGLPGQIGPPGAPG 422
Score = 35.4 bits (80), Expect = 0.33
Identities = 23/58 (39%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 477 SSPGPG-PNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSPPLPPGPPEIVGPQNQAG 533
+SPG P + QG PG PG G PG P P+ GPP GPQ Q G
Sbjct: 113 TSPGCNCPPVFQGQPGTRGFPGFPGPIGLDGKPGHPGPKGDMGLTGPPGQPGPQGQKG 170
Score = 32.3 bits (72), Expect = 2.8
Identities = 34/129 (26%), Positives = 45/129 (34%), Gaps = 32/129 (24%)
Query: 457 PPGPQF----------QGSSPHPQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHPCAG 506
PPGP+ +G P G+ PG ++ P + PG+ G G
Sbjct: 244 PPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGI-PGTKGEKGAEG 302
Query: 507 PPGLPV-----------------PQSPPLPPGPPEIVGPQNQAGVLVQPDTSLTPPSMGG 549
PGLP + P PPG P GP+ +AGV D + PP G
Sbjct: 303 SPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGV----DGQVGPPGQPG 358
Query: 550 AYHSPGFPG 558
G G
Sbjct: 359 DKGERGAAG 367
>gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens]
Length = 664
Score = 54.3 bits (129), Expect = 7e-07
Identities = 30/84 (35%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 457 PPGPQFQGSSPHPQHIYSSGSSPG-PGPNMSQGHSSPVMHPGSPGH-----HPCAGPPGL 510
PPGPQ P + PG PG +G + PG G +P A PGL
Sbjct: 457 PPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGL 516
Query: 511 PVPQSPPLPPGPPEIVGPQNQAGV 534
P P+ PP PPG + GP+ +AG+
Sbjct: 517 PGPEGPPGPPGLQGVPGPKGEAGL 540
Score = 45.4 bits (106), Expect = 3e-04
Identities = 39/129 (30%), Positives = 48/129 (37%), Gaps = 14/129 (10%)
Query: 458 PGPQFQGSSPHPQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSPP 517
PGPQ Q G P G P PG PG G PGLP P PP
Sbjct: 189 PGPQGQKGEKG-----QCGEYPHRGEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPP 243
Query: 518 LPPGPPEIVGPQNQAGVLVQPDT--SLTPPSMGGAYHSPGFPGHVMKVPRENHCSPGSSY 575
PGPP GP+ G+ P M G + + G PG + + PG+
Sbjct: 244 GLPGPP---GPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGTKG 300
Query: 576 QQ----SPG 580
++ SPG
Sbjct: 301 EKGAEGSPG 309
Score = 44.7 bits (104), Expect = 5e-04
Identities = 35/112 (31%), Positives = 41/112 (36%), Gaps = 14/112 (12%)
Query: 457 PPG-PQFQGSSPHPQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGH---------HPCAG 506
PPG P +G P I G PGP G + P PG G +P G
Sbjct: 149 PPGQPGTRGFPGFPGPIGLDGKPGHPGPKGDMGLTGPPGQPGPQGQKGEKGQCGEYPHRG 208
Query: 507 PPGLPVPQSPPLPPGPPEIVGPQNQAGVLVQPDTSLTPPSMGGAYHSPGFPG 558
Q PP PPGPP GP G+ + PP + G G PG
Sbjct: 209 EQSQASIQGPPGPPGPPGPSGPLGHPGL----PGPMGPPGLPGPPGPKGDPG 256
Score = 41.2 bits (95), Expect = 0.006
Identities = 32/102 (31%), Positives = 38/102 (37%), Gaps = 7/102 (6%)
Query: 481 PGPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSPPLPPGPPEIVGPQNQAGVLVQPDT 540
PG G + PG PGH GP G P PP P GPP GP G P
Sbjct: 422 PGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGENGHPG- 480
Query: 541 SLTPPSMG--GAYHSPGFPGHVMKVPRENHCSPGSSYQQSPG 580
+P G G G PG + + +PG+ PG
Sbjct: 481 --SPGEKGEKGETGQAGSPGEKGEAGEKG--NPGAEVPGLPG 518
Score = 40.8 bits (94), Expect = 0.008
Identities = 30/100 (30%), Positives = 38/100 (38%), Gaps = 10/100 (10%)
Query: 445 GRKPPAFYTSASPPGPQFQGSSPHPQ-HIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHP 503
G + P PPGP P P+ G+ G +G P+ PG+ G
Sbjct: 510 GAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDG 569
Query: 504 CAGPPGLPVPQSPPLPPGP---------PEIVGPQNQAGV 534
GPPG P P P P GP P + GP AG+
Sbjct: 570 RPGPPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGL 609
Score = 39.7 bits (91), Expect = 0.017
Identities = 37/122 (30%), Positives = 39/122 (31%), Gaps = 27/122 (22%)
Query: 460 PQFQGSSPHPQHIYSSGSSPGP------GPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVP 513
P FQG + P SPG GP G PG PG G PG P P
Sbjct: 121 PAFQGPTGRP----GLPGSPGDAGLSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGHPGP 176
Query: 514 QSPPLPPGPPEIVGPQNQAGVLVQ-----------------PDTSLTPPSMGGAYHSPGF 556
+ GPP GPQ Q G Q P PP G PG
Sbjct: 177 KGDMGLTGPPGQPGPQGQKGEKGQCGEYPHRGEQSQASIQGPPGPPGPPGPSGPLGHPGL 236
Query: 557 PG 558
PG
Sbjct: 237 PG 238
Score = 36.6 bits (83), Expect = 0.15
Identities = 26/77 (33%), Positives = 28/77 (36%), Gaps = 4/77 (5%)
Query: 482 GPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSPPLPPGPPEIVGPQNQAGVLVQPDTS 541
GP G P PG PG G PG P P G P +GP G P
Sbjct: 411 GPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQG----PPGK 466
Query: 542 LTPPSMGGAYHSPGFPG 558
PP + G PG PG
Sbjct: 467 DGPPGVKGENGHPGSPG 483
Score = 36.6 bits (83), Expect = 0.15
Identities = 22/65 (33%), Positives = 24/65 (36%)
Query: 469 PQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSPPLPPGPPEIVGP 528
P I G+ PG G P H G G G G P PQ PP GPP + G
Sbjct: 416 PGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGE 475
Query: 529 QNQAG 533
G
Sbjct: 476 NGHPG 480
Score = 36.2 bits (82), Expect = 0.19
Identities = 29/87 (33%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Query: 479 PGP-GPNMSQGHSSPVMHPGSP---GHHPCAGPPGLPVPQSPPLPPGPPEIV---GPQNQ 531
PGP GP G V PG P G AG G P+ PG E+V G N+
Sbjct: 340 PGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPDGPKGSKGEPGKGEMVDYNGNINE 399
Query: 532 AGVLVQPDTSLTPPSMGGAYHSPGFPG 558
A ++ + PP + G PG PG
Sbjct: 400 ALQEIRTLALMGPPGLPGQIGPPGAPG 426
Score = 35.4 bits (80), Expect = 0.33
Identities = 34/109 (31%), Positives = 39/109 (35%), Gaps = 12/109 (11%)
Query: 481 PGPNMSQGHSSPVMHPGSPGHHPCA--------GPPGLPVPQSPPLPPGPPEIVGPQNQA 532
PG N P PG PG A GPPG P + P PGP + G
Sbjct: 115 PGCNCPPAFQGPTGRPGLPGSPGDAGLSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGHP 174
Query: 533 GVLVQPDTSLT-PPSMGGAYHSPGFPGHVMKVPRENHCSPGSSYQQSPG 580
G + D LT PP G G G + P S +S Q PG
Sbjct: 175 G--PKGDMGLTGPPGQPGPQGQKGEKGQCGEYPHRGEQSQ-ASIQGPPG 220
Score = 32.3 bits (72), Expect = 2.8
Identities = 34/129 (26%), Positives = 45/129 (34%), Gaps = 32/129 (24%)
Query: 457 PPGPQF----------QGSSPHPQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHPCAG 506
PPGP+ +G P G+ PG ++ P + PG+ G G
Sbjct: 248 PPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGI-PGTKGEKGAEG 306
Query: 507 PPGLPV-----------------PQSPPLPPGPPEIVGPQNQAGVLVQPDTSLTPPSMGG 549
PGLP + P PPG P GP+ +AGV D + PP G
Sbjct: 307 SPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGV----DGQVGPPGQPG 362
Query: 550 AYHSPGFPG 558
G G
Sbjct: 363 DKGERGAAG 371
Score = 31.2 bits (69), Expect = 6.1
Identities = 24/79 (30%), Positives = 28/79 (35%), Gaps = 21/79 (26%)
Query: 498 SPGHHPCAGPPGLPVPQSPPLPPGPP-----EIVGPQNQAGVLVQPDTSLTPPSMGGAYH 552
SPG C PP P P PG P I+GP+ PP G
Sbjct: 114 SPG---CNCPPAFQGPTGRPGLPGSPGDAGLSIIGPRG-------------PPGQPGTRG 157
Query: 553 SPGFPGHVMKVPRENHCSP 571
PGFPG + + H P
Sbjct: 158 FPGFPGPIGLDGKPGHPGP 176
>gi|22027593 alpha 1 type XIII collagen isoform 11 [Homo sapiens]
Length = 686
Score = 54.3 bits (129), Expect = 7e-07
Identities = 30/84 (35%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 457 PPGPQFQGSSPHPQHIYSSGSSPG-PGPNMSQGHSSPVMHPGSPGH-----HPCAGPPGL 510
PPGPQ P + PG PG +G + PG G +P A PGL
Sbjct: 491 PPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGL 550
Query: 511 PVPQSPPLPPGPPEIVGPQNQAGV 534
P P+ PP PPG + GP+ +AG+
Sbjct: 551 PGPEGPPGPPGLQGVPGPKGEAGL 574
Score = 42.0 bits (97), Expect = 0.003
Identities = 44/146 (30%), Positives = 55/146 (37%), Gaps = 26/146 (17%)
Query: 458 PGPQFQ-------GSSPHPQHIYSSGSSPGPGPNMS----QGHSS------PVMHPGSPG 500
PGPQ Q G PH + P P + QG S P PG PG
Sbjct: 201 PGPQGQKGEKGQCGEYPHRLLPLLNSVRLAPPPVIKRRTFQGEQSQASIQGPPGPPGPPG 260
Query: 501 HHPCAGPPGLPVPQSPPLPPGPPEIVGPQNQAGVLVQPDT--SLTPPSMGGAYHSPGFPG 558
G PGLP P PP PGPP GP+ G+ P M G + + G PG
Sbjct: 261 PSGPLGHPGLPGPMGPPGLPGPP---GPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPG 317
Query: 559 HVMKVPRENHCSPGSSYQQ----SPG 580
+ + PG+ ++ SPG
Sbjct: 318 IAVAGMKGEPGIPGTKGEKGAEGSPG 343
Score = 41.2 bits (95), Expect = 0.006
Identities = 32/102 (31%), Positives = 38/102 (37%), Gaps = 7/102 (6%)
Query: 481 PGPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSPPLPPGPPEIVGPQNQAGVLVQPDT 540
PG G + PG PGH GP G P PP P GPP GP G P
Sbjct: 456 PGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGENGHPG- 514
Query: 541 SLTPPSMG--GAYHSPGFPGHVMKVPRENHCSPGSSYQQSPG 580
+P G G G PG + + +PG+ PG
Sbjct: 515 --SPGEKGEKGETGQAGSPGEKGEAGEKG--NPGAEVPGLPG 552
Score = 40.8 bits (94), Expect = 0.008
Identities = 31/89 (34%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Query: 448 PPAFYTSASPPG-PQFQGSSPHPQHIYSSGSSPGP--GPNMSQGHSSPVMHPGSPGHHPC 504
PPAF PG P +G+ P + S G + GP G PG PG
Sbjct: 120 PPAFQGPTGRPGLPGDKGAIGMPGRVGSPGDAGLSIIGPRGPPGQPGTRGFPGFPGPIGL 179
Query: 505 AGPPGLPVPQSPPLPPGPPEIVGPQNQAG 533
G PG P P+ GPP GPQ Q G
Sbjct: 180 DGKPGHPGPKGDMGLTGPPGQPGPQGQKG 208
Score = 36.6 bits (83), Expect = 0.15
Identities = 26/77 (33%), Positives = 28/77 (36%), Gaps = 4/77 (5%)
Query: 482 GPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSPPLPPGPPEIVGPQNQAGVLVQPDTS 541
GP G P PG PG G PG P P G P +GP G P
Sbjct: 445 GPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQG----PPGK 500
Query: 542 LTPPSMGGAYHSPGFPG 558
PP + G PG PG
Sbjct: 501 DGPPGVKGENGHPGSPG 517
Score = 36.6 bits (83), Expect = 0.15
Identities = 22/65 (33%), Positives = 24/65 (36%)
Query: 469 PQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSPPLPPGPPEIVGP 528
P I G+ PG G P H G G G G P PQ PP GPP + G
Sbjct: 450 PGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGE 509
Query: 529 QNQAG 533
G
Sbjct: 510 NGHPG 514
Score = 36.2 bits (82), Expect = 0.19
Identities = 29/87 (33%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Query: 479 PGP-GPNMSQGHSSPVMHPGSP---GHHPCAGPPGLPVPQSPPLPPGPPEIV---GPQNQ 531
PGP GP G V PG P G AG G P+ PG E+V G N+
Sbjct: 374 PGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPDGPKGSKGEPGKGEMVDYNGNINE 433
Query: 532 AGVLVQPDTSLTPPSMGGAYHSPGFPG 558
A ++ + PP + G PG PG
Sbjct: 434 ALQEIRTLALMGPPGLPGQIGPPGAPG 460
Score = 33.9 bits (76), Expect = 0.95
Identities = 30/101 (29%), Positives = 35/101 (34%), Gaps = 18/101 (17%)
Query: 458 PGPQFQGSSPHPQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSPP 517
PGP+ P Q + PGP G G G GP GLP P
Sbjct: 551 PGPEGPPGPPGLQGV--------PGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGTPGPI 602
Query: 518 LPPGPPEIVGPQNQAGVLVQPDTSLTPPSMGGAYHSPGFPG 558
PGP GP+ + G S P M G + G PG
Sbjct: 603 GVPGP---AGPKGERG-------SKGDPGMTGPTGAAGLPG 633
Score = 32.3 bits (72), Expect = 2.8
Identities = 26/92 (28%), Positives = 31/92 (33%), Gaps = 19/92 (20%)
Query: 481 PGPNMSQGHSSPVMHPGSPGHHPCAGPPG-LPVPQSPPLPPGPPEIVGPQNQAGVLVQPD 539
PG N P PG PG G PG + P L I+GP+
Sbjct: 115 PGCNCPPAFQGPTGRPGLPGDKGAIGMPGRVGSPGDAGL-----SIIGPRG--------- 160
Query: 540 TSLTPPSMGGAYHSPGFPGHVMKVPRENHCSP 571
PP G PGFPG + + H P
Sbjct: 161 ----PPGQPGTRGFPGFPGPIGLDGKPGHPGP 188
Score = 32.3 bits (72), Expect = 2.8
Identities = 34/129 (26%), Positives = 45/129 (34%), Gaps = 32/129 (24%)
Query: 457 PPGPQF----------QGSSPHPQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHPCAG 506
PPGP+ +G P G+ PG ++ P + PG+ G G
Sbjct: 282 PPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGI-PGTKGEKGAEG 340
Query: 507 PPGLPV-----------------PQSPPLPPGPPEIVGPQNQAGVLVQPDTSLTPPSMGG 549
PGLP + P PPG P GP+ +AGV D + PP G
Sbjct: 341 SPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGV----DGQVGPPGQPG 396
Query: 550 AYHSPGFPG 558
G G
Sbjct: 397 DKGERGAAG 405
Score = 30.8 bits (68), Expect = 8.0
Identities = 31/107 (28%), Positives = 39/107 (36%), Gaps = 12/107 (11%)
Query: 460 PQFQGSSPHPQHIYSSGSSPGPGPNMSQGHSS-PVMHP-GSPGHHPCAGPPGLPVPQSPP 517
P FQG + P G+ PG S G + ++ P G PG G PG P P
Sbjct: 121 PAFQGPTGRPGLPGDKGAIGMPGRVGSPGDAGLSIIGPRGPPGQPGTRGFPGFPGPIGLD 180
Query: 518 LPPGPPEIVGPQNQAGVLVQPDTSLTPPSMGGAYHSPGFPGHVMKVP 564
PG P GP+ G+ PP G G G + P
Sbjct: 181 GKPGHP---GPKGDMGL-------TGPPGQPGPQGQKGEKGQCGEYP 217
>gi|22027591 alpha 1 type XIII collagen isoform 10 [Homo sapiens]
Length = 676
Score = 54.3 bits (129), Expect = 7e-07
Identities = 30/84 (35%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 457 PPGPQFQGSSPHPQHIYSSGSSPG-PGPNMSQGHSSPVMHPGSPGH-----HPCAGPPGL 510
PPGPQ P + PG PG +G + PG G +P A PGL
Sbjct: 469 PPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGL 528
Query: 511 PVPQSPPLPPGPPEIVGPQNQAGV 534
P P+ PP PPG + GP+ +AG+
Sbjct: 529 PGPEGPPGPPGLQGVPGPKGEAGL 552
Score = 45.4 bits (106), Expect = 3e-04
Identities = 39/129 (30%), Positives = 48/129 (37%), Gaps = 14/129 (10%)
Query: 458 PGPQFQGSSPHPQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSPP 517
PGPQ Q G P G P PG PG G PGLP P PP
Sbjct: 201 PGPQGQKGEKG-----QCGEYPHRGEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPP 255
Query: 518 LPPGPPEIVGPQNQAGVLVQPDT--SLTPPSMGGAYHSPGFPGHVMKVPRENHCSPGSSY 575
PGPP GP+ G+ P M G + + G PG + + PG+
Sbjct: 256 GLPGPP---GPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGTKG 312
Query: 576 QQ----SPG 580
++ SPG
Sbjct: 313 EKGAEGSPG 321
Score = 45.1 bits (105), Expect = 4e-04
Identities = 44/153 (28%), Positives = 52/153 (33%), Gaps = 46/153 (30%)
Query: 448 PPAFYTSASPPG-PQFQGSSPHPQHIYSSGSS----------PG-PGPNMSQGHSSPVM- 494
PPAF PG P +G+ P + S G + PG PG G P+
Sbjct: 120 PPAFQGPTGRPGLPGDKGAIGMPGRVGSPGDAGLSIIGPRGPPGQPGTRGFPGFPGPIGL 179
Query: 495 -----HPGSPGHHPCAGPPGLPVPQS------------------------PPLPPGPPEI 525
HPG G GPPG P PQ PP PPGPP
Sbjct: 180 DGKPGHPGPKGDMGLTGPPGQPGPQGQKGEKGQCGEYPHRGEQSQASIQGPPGPPGPPGP 239
Query: 526 VGPQNQAGVLVQPDTSLTPPSMGGAYHSPGFPG 558
GP G+ + PP + G G PG
Sbjct: 240 SGPLGHPGL----PGPMGPPGLPGPPGPKGDPG 268
Score = 41.2 bits (95), Expect = 0.006
Identities = 32/102 (31%), Positives = 38/102 (37%), Gaps = 7/102 (6%)
Query: 481 PGPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSPPLPPGPPEIVGPQNQAGVLVQPDT 540
PG G + PG PGH GP G P PP P GPP GP G P
Sbjct: 434 PGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGENGHPG- 492
Query: 541 SLTPPSMG--GAYHSPGFPGHVMKVPRENHCSPGSSYQQSPG 580
+P G G G PG + + +PG+ PG
Sbjct: 493 --SPGEKGEKGETGQAGSPGEKGEAGEKG--NPGAEVPGLPG 530
Score = 40.8 bits (94), Expect = 0.008
Identities = 30/100 (30%), Positives = 38/100 (38%), Gaps = 10/100 (10%)
Query: 445 GRKPPAFYTSASPPGPQFQGSSPHPQ-HIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHP 503
G + P PPGP P P+ G+ G +G P+ PG+ G
Sbjct: 522 GAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDG 581
Query: 504 CAGPPGLPVPQSPPLPPGP---------PEIVGPQNQAGV 534
GPPG P P P P GP P + GP AG+
Sbjct: 582 RPGPPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGL 621
Score = 36.6 bits (83), Expect = 0.15
Identities = 26/77 (33%), Positives = 28/77 (36%), Gaps = 4/77 (5%)
Query: 482 GPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSPPLPPGPPEIVGPQNQAGVLVQPDTS 541
GP G P PG PG G PG P P G P +GP G P
Sbjct: 423 GPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQG----PPGK 478
Query: 542 LTPPSMGGAYHSPGFPG 558
PP + G PG PG
Sbjct: 479 DGPPGVKGENGHPGSPG 495
Score = 36.6 bits (83), Expect = 0.15
Identities = 22/65 (33%), Positives = 24/65 (36%)
Query: 469 PQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSPPLPPGPPEIVGP 528
P I G+ PG G P H G G G G P PQ PP GPP + G
Sbjct: 428 PGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGE 487
Query: 529 QNQAG 533
G
Sbjct: 488 NGHPG 492
Score = 36.2 bits (82), Expect = 0.19
Identities = 29/87 (33%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Query: 479 PGP-GPNMSQGHSSPVMHPGSP---GHHPCAGPPGLPVPQSPPLPPGPPEIV---GPQNQ 531
PGP GP G V PG P G AG G P+ PG E+V G N+
Sbjct: 352 PGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPDGPKGSKGEPGKGEMVDYNGNINE 411
Query: 532 AGVLVQPDTSLTPPSMGGAYHSPGFPG 558
A ++ + PP + G PG PG
Sbjct: 412 ALQEIRTLALMGPPGLPGQIGPPGAPG 438
Score = 32.7 bits (73), Expect = 2.1
Identities = 35/119 (29%), Positives = 39/119 (32%), Gaps = 20/119 (16%)
Query: 481 PGPNMSQGHSSPVMHPGSPGHHPCAGPPG-----------LPVPQSPPLPPGP---PEIV 526
PG N P PG PG G PG + P+ PP PG P
Sbjct: 115 PGCNCPPAFQGPTGRPGLPGDKGAIGMPGRVGSPGDAGLSIIGPRGPPGQPGTRGFPGFP 174
Query: 527 GPQNQAGVLVQP----DTSLT-PPSMGGAYHSPGFPGHVMKVPRENHCSPGSSYQQSPG 580
GP G P D LT PP G G G + P S +S Q PG
Sbjct: 175 GPIGLDGKPGHPGPKGDMGLTGPPGQPGPQGQKGEKGQCGEYPHRGEQSQ-ASIQGPPG 232
Score = 32.3 bits (72), Expect = 2.8
Identities = 34/129 (26%), Positives = 45/129 (34%), Gaps = 32/129 (24%)
Query: 457 PPGPQF----------QGSSPHPQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHPCAG 506
PPGP+ +G P G+ PG ++ P + PG+ G G
Sbjct: 260 PPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGI-PGTKGEKGAEG 318
Query: 507 PPGLPV-----------------PQSPPLPPGPPEIVGPQNQAGVLVQPDTSLTPPSMGG 549
PGLP + P PPG P GP+ +AGV D + PP G
Sbjct: 319 SPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGV----DGQVGPPGQPG 374
Query: 550 AYHSPGFPG 558
G G
Sbjct: 375 DKGERGAAG 383
>gi|22027589 alpha 1 type XIII collagen isoform 9 [Homo sapiens]
Length = 688
Score = 54.3 bits (129), Expect = 7e-07
Identities = 30/84 (35%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 457 PPGPQFQGSSPHPQHIYSSGSSPG-PGPNMSQGHSSPVMHPGSPGH-----HPCAGPPGL 510
PPGPQ P + PG PG +G + PG G +P A PGL
Sbjct: 481 PPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGL 540
Query: 511 PVPQSPPLPPGPPEIVGPQNQAGV 534
P P+ PP PPG + GP+ +AG+
Sbjct: 541 PGPEGPPGPPGLQGVPGPKGEAGL 564
Score = 42.7 bits (99), Expect = 0.002
Identities = 42/156 (26%), Positives = 57/156 (36%), Gaps = 32/156 (20%)
Query: 431 EIVVKPTVDLAHKIGRKPPAFYTSASPPGPQFQGSSPHPQHIYSSGSSPGPGPNMSQGHS 490
+I+ + L + + PP + G Q Q S P PGP
Sbjct: 204 QIIALKLLPLLNSVRLAPPPVIKRRTFQGEQSQASIQGP-----------PGP------- 245
Query: 491 SPVMHPGSPGHHPCAGPPGLPVPQSPPLPPGPPEIVGPQNQAGVLVQPDT--SLTPPSMG 548
PG PG G PGLP P PP PGPP GP+ G+ P M
Sbjct: 246 -----PGPPGPSGPLGHPGLPGPMGPPGLPGPP---GPKGDPGIQGYHGRKGERGMPGMP 297
Query: 549 GAYHSPGFPGHVMKVPRENHCSPGSSYQQ----SPG 580
G + + G PG + + PG+ ++ SPG
Sbjct: 298 GKHGAKGAPGIAVAGMKGEPGIPGTKGEKGAEGSPG 333
Score = 41.2 bits (95), Expect = 0.006
Identities = 32/102 (31%), Positives = 38/102 (37%), Gaps = 7/102 (6%)
Query: 481 PGPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSPPLPPGPPEIVGPQNQAGVLVQPDT 540
PG G + PG PGH GP G P PP P GPP GP G P
Sbjct: 446 PGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGENGHPG- 504
Query: 541 SLTPPSMG--GAYHSPGFPGHVMKVPRENHCSPGSSYQQSPG 580
+P G G G PG + + +PG+ PG
Sbjct: 505 --SPGEKGEKGETGQAGSPGEKGEAGEKG--NPGAEVPGLPG 542
Score = 40.8 bits (94), Expect = 0.008
Identities = 30/100 (30%), Positives = 38/100 (38%), Gaps = 10/100 (10%)
Query: 445 GRKPPAFYTSASPPGPQFQGSSPHPQ-HIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHP 503
G + P PPGP P P+ G+ G +G P+ PG+ G
Sbjct: 534 GAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDG 593
Query: 504 CAGPPGLPVPQSPPLPPGP---------PEIVGPQNQAGV 534
GPPG P P P P GP P + GP AG+
Sbjct: 594 RPGPPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGL 633
Score = 36.6 bits (83), Expect = 0.15
Identities = 26/77 (33%), Positives = 28/77 (36%), Gaps = 4/77 (5%)
Query: 482 GPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSPPLPPGPPEIVGPQNQAGVLVQPDTS 541
GP G P PG PG G PG P P G P +GP G P
Sbjct: 435 GPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQG----PPGK 490
Query: 542 LTPPSMGGAYHSPGFPG 558
PP + G PG PG
Sbjct: 491 DGPPGVKGENGHPGSPG 507
Score = 36.6 bits (83), Expect = 0.15
Identities = 22/65 (33%), Positives = 24/65 (36%)
Query: 469 PQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSPPLPPGPPEIVGP 528
P I G+ PG G P H G G G G P PQ PP GPP + G
Sbjct: 440 PGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGE 499
Query: 529 QNQAG 533
G
Sbjct: 500 NGHPG 504
Score = 36.2 bits (82), Expect = 0.19
Identities = 29/87 (33%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Query: 479 PGP-GPNMSQGHSSPVMHPGSP---GHHPCAGPPGLPVPQSPPLPPGPPEIV---GPQNQ 531
PGP GP G V PG P G AG G P+ PG E+V G N+
Sbjct: 364 PGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPDGPKGSKGEPGKGEMVDYNGNINE 423
Query: 532 AGVLVQPDTSLTPPSMGGAYHSPGFPG 558
A ++ + PP + G PG PG
Sbjct: 424 ALQEIRTLALMGPPGLPGQIGPPGAPG 450
Score = 34.7 bits (78), Expect = 0.56
Identities = 41/145 (28%), Positives = 46/145 (31%), Gaps = 36/145 (24%)
Query: 448 PPAFYTSASPPG----PQFQGSSPHPQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHP 503
PPAF PG P +G P I G PGP G + P PG G
Sbjct: 120 PPAFQGPTGRPGLPGQPGTRGFPGFPGPIGLDGKPGHPGPKGDMGLTGPPGQPGPQGQKG 179
Query: 504 CAGPPG-------------------------LPVPQSPPLPPGPPEI-----VGPQNQAG 533
G G LP+ S L P PP I G Q+QA
Sbjct: 180 EKGQCGEYPHRECLSSMPAALRSSQIIALKLLPLLNSVRLAP-PPVIKRRTFQGEQSQAS 238
Query: 534 VLVQPDTSLTPPSMGGAYHSPGFPG 558
+ P PP G PG PG
Sbjct: 239 IQGPPGPP-GPPGPSGPLGHPGLPG 262
Score = 33.5 bits (75), Expect = 1.2
Identities = 25/84 (29%), Positives = 28/84 (33%), Gaps = 10/84 (11%)
Query: 481 PGPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSPPLPPGPPEIVGPQNQAGVLVQPDT 540
PG N P PG PG G PG P P PG P GP+ G+
Sbjct: 115 PGCNCPPAFQGPTGRPGLPGQPGTRGFPGFPGPIGLDGKPGHP---GPKGDMGL------ 165
Query: 541 SLTPPSMGGAYHSPGFPGHVMKVP 564
PP G G G + P
Sbjct: 166 -TGPPGQPGPQGQKGEKGQCGEYP 188
Score = 32.3 bits (72), Expect = 2.8
Identities = 34/129 (26%), Positives = 45/129 (34%), Gaps = 32/129 (24%)
Query: 457 PPGPQF----------QGSSPHPQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHPCAG 506
PPGP+ +G P G+ PG ++ P + PG+ G G
Sbjct: 272 PPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGI-PGTKGEKGAEG 330
Query: 507 PPGLPV-----------------PQSPPLPPGPPEIVGPQNQAGVLVQPDTSLTPPSMGG 549
PGLP + P PPG P GP+ +AGV D + PP G
Sbjct: 331 SPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGV----DGQVGPPGQPG 386
Query: 550 AYHSPGFPG 558
G G
Sbjct: 387 DKGERGAAG 395
>gi|22027577 alpha 1 type XIII collagen isoform 5 [Homo sapiens]
Length = 695
Score = 54.3 bits (129), Expect = 7e-07
Identities = 30/84 (35%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 457 PPGPQFQGSSPHPQHIYSSGSSPG-PGPNMSQGHSSPVMHPGSPGH-----HPCAGPPGL 510
PPGPQ P + PG PG +G + PG G +P A PGL
Sbjct: 488 PPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGL 547
Query: 511 PVPQSPPLPPGPPEIVGPQNQAGV 534
P P+ PP PPG + GP+ +AG+
Sbjct: 548 PGPEGPPGPPGLQGVPGPKGEAGL 571
Score = 44.7 bits (104), Expect = 5e-04
Identities = 43/143 (30%), Positives = 53/143 (37%), Gaps = 23/143 (16%)
Query: 458 PGPQFQ-------GSSPH-------PQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHP 503
PGPQ Q G PH P + SS G P PG PG
Sbjct: 201 PGPQGQKGEKGQCGEYPHRECLSSMPAALRSSQIIALKGEQSQASIQGPPGPPGPPGPSG 260
Query: 504 CAGPPGLPVPQSPPLPPGPPEIVGPQNQAGVLVQPDT--SLTPPSMGGAYHSPGFPGHVM 561
G PGLP P PP PGPP GP+ G+ P M G + + G PG +
Sbjct: 261 PLGHPGLPGPMGPPGLPGPP---GPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAV 317
Query: 562 KVPRENHCSPGSSYQQ----SPG 580
+ PG+ ++ SPG
Sbjct: 318 AGMKGEPGIPGTKGEKGAEGSPG 340
Score = 41.2 bits (95), Expect = 0.006
Identities = 32/102 (31%), Positives = 38/102 (37%), Gaps = 7/102 (6%)
Query: 481 PGPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSPPLPPGPPEIVGPQNQAGVLVQPDT 540
PG G + PG PGH GP G P PP P GPP GP G P
Sbjct: 453 PGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGENGHPG- 511
Query: 541 SLTPPSMG--GAYHSPGFPGHVMKVPRENHCSPGSSYQQSPG 580
+P G G G PG + + +PG+ PG
Sbjct: 512 --SPGEKGEKGETGQAGSPGEKGEAGEKG--NPGAEVPGLPG 549
Score = 40.8 bits (94), Expect = 0.008
Identities = 31/89 (34%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Query: 448 PPAFYTSASPPG-PQFQGSSPHPQHIYSSGSSPGP--GPNMSQGHSSPVMHPGSPGHHPC 504
PPAF PG P +G+ P + S G + GP G PG PG
Sbjct: 120 PPAFQGPTGRPGLPGDKGAIGMPGRVGSPGDAGLSIIGPRGPPGQPGTRGFPGFPGPIGL 179
Query: 505 AGPPGLPVPQSPPLPPGPPEIVGPQNQAG 533
G PG P P+ GPP GPQ Q G
Sbjct: 180 DGKPGHPGPKGDMGLTGPPGQPGPQGQKG 208
Score = 40.8 bits (94), Expect = 0.008
Identities = 30/100 (30%), Positives = 38/100 (38%), Gaps = 10/100 (10%)
Query: 445 GRKPPAFYTSASPPGPQFQGSSPHPQ-HIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHP 503
G + P PPGP P P+ G+ G +G P+ PG+ G
Sbjct: 541 GAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDG 600
Query: 504 CAGPPGLPVPQSPPLPPGP---------PEIVGPQNQAGV 534
GPPG P P P P GP P + GP AG+
Sbjct: 601 RPGPPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGL 640
Score = 36.6 bits (83), Expect = 0.15
Identities = 26/77 (33%), Positives = 28/77 (36%), Gaps = 4/77 (5%)
Query: 482 GPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSPPLPPGPPEIVGPQNQAGVLVQPDTS 541
GP G P PG PG G PG P P G P +GP G P
Sbjct: 442 GPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQG----PPGK 497
Query: 542 LTPPSMGGAYHSPGFPG 558
PP + G PG PG
Sbjct: 498 DGPPGVKGENGHPGSPG 514
Score = 36.6 bits (83), Expect = 0.15
Identities = 22/65 (33%), Positives = 24/65 (36%)
Query: 469 PQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSPPLPPGPPEIVGP 528
P I G+ PG G P H G G G G P PQ PP GPP + G
Sbjct: 447 PGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGE 506
Query: 529 QNQAG 533
G
Sbjct: 507 NGHPG 511
Score = 36.2 bits (82), Expect = 0.19
Identities = 29/87 (33%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Query: 479 PGP-GPNMSQGHSSPVMHPGSP---GHHPCAGPPGLPVPQSPPLPPGPPEIV---GPQNQ 531
PGP GP G V PG P G AG G P+ PG E+V G N+
Sbjct: 371 PGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPDGPKGSKGEPGKGEMVDYNGNINE 430
Query: 532 AGVLVQPDTSLTPPSMGGAYHSPGFPG 558
A ++ + PP + G PG PG
Sbjct: 431 ALQEIRTLALMGPPGLPGQIGPPGAPG 457
Score = 32.3 bits (72), Expect = 2.8
Identities = 26/92 (28%), Positives = 31/92 (33%), Gaps = 19/92 (20%)
Query: 481 PGPNMSQGHSSPVMHPGSPGHHPCAGPPG-LPVPQSPPLPPGPPEIVGPQNQAGVLVQPD 539
PG N P PG PG G PG + P L I+GP+
Sbjct: 115 PGCNCPPAFQGPTGRPGLPGDKGAIGMPGRVGSPGDAGL-----SIIGPRG--------- 160
Query: 540 TSLTPPSMGGAYHSPGFPGHVMKVPRENHCSP 571
PP G PGFPG + + H P
Sbjct: 161 ----PPGQPGTRGFPGFPGPIGLDGKPGHPGP 188
Score = 32.3 bits (72), Expect = 2.8
Identities = 34/129 (26%), Positives = 45/129 (34%), Gaps = 32/129 (24%)
Query: 457 PPGPQF----------QGSSPHPQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHPCAG 506
PPGP+ +G P G+ PG ++ P + PG+ G G
Sbjct: 279 PPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGI-PGTKGEKGAEG 337
Query: 507 PPGLPV-----------------PQSPPLPPGPPEIVGPQNQAGVLVQPDTSLTPPSMGG 549
PGLP + P PPG P GP+ +AGV D + PP G
Sbjct: 338 SPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGV----DGQVGPPGQPG 393
Query: 550 AYHSPGFPG 558
G G
Sbjct: 394 DKGERGAAG 402
Score = 30.8 bits (68), Expect = 8.0
Identities = 31/107 (28%), Positives = 39/107 (36%), Gaps = 12/107 (11%)
Query: 460 PQFQGSSPHPQHIYSSGSSPGPGPNMSQGHSS-PVMHP-GSPGHHPCAGPPGLPVPQSPP 517
P FQG + P G+ PG S G + ++ P G PG G PG P P
Sbjct: 121 PAFQGPTGRPGLPGDKGAIGMPGRVGSPGDAGLSIIGPRGPPGQPGTRGFPGFPGPIGLD 180
Query: 518 LPPGPPEIVGPQNQAGVLVQPDTSLTPPSMGGAYHSPGFPGHVMKVP 564
PG P GP+ G+ PP G G G + P
Sbjct: 181 GKPGHP---GPKGDMGL-------TGPPGQPGPQGQKGEKGQCGEYP 217
>gi|22027574 alpha 1 type XIII collagen isoform 4 [Homo sapiens]
Length = 698
Score = 54.3 bits (129), Expect = 7e-07
Identities = 30/84 (35%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 457 PPGPQFQGSSPHPQHIYSSGSSPG-PGPNMSQGHSSPVMHPGSPGH-----HPCAGPPGL 510
PPGPQ P + PG PG +G + PG G +P A PGL
Sbjct: 491 PPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGL 550
Query: 511 PVPQSPPLPPGPPEIVGPQNQAGV 534
P P+ PP PPG + GP+ +AG+
Sbjct: 551 PGPEGPPGPPGLQGVPGPKGEAGL 574
Score = 42.0 bits (97), Expect = 0.003
Identities = 44/146 (30%), Positives = 55/146 (37%), Gaps = 26/146 (17%)
Query: 458 PGPQFQ-------GSSPHPQHIYSSGSSPGPGPNMS----QGHSS------PVMHPGSPG 500
PGPQ Q G PH + P P + QG S P PG PG
Sbjct: 201 PGPQGQKGEKGQCGEYPHRLLPLLNSVRLAPPPVIKRRTFQGEQSQASIQGPPGPPGPPG 260
Query: 501 HHPCAGPPGLPVPQSPPLPPGPPEIVGPQNQAGVLVQPDT--SLTPPSMGGAYHSPGFPG 558
G PGLP P PP PGPP GP+ G+ P M G + + G PG
Sbjct: 261 PSGPLGHPGLPGPMGPPGLPGPP---GPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPG 317
Query: 559 HVMKVPRENHCSPGSSYQQ----SPG 580
+ + PG+ ++ SPG
Sbjct: 318 IAVAGMKGEPGIPGTKGEKGAEGSPG 343
Score = 41.2 bits (95), Expect = 0.006
Identities = 32/102 (31%), Positives = 38/102 (37%), Gaps = 7/102 (6%)
Query: 481 PGPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSPPLPPGPPEIVGPQNQAGVLVQPDT 540
PG G + PG PGH GP G P PP P GPP GP G P
Sbjct: 456 PGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGENGHPG- 514
Query: 541 SLTPPSMG--GAYHSPGFPGHVMKVPRENHCSPGSSYQQSPG 580
+P G G G PG + + +PG+ PG
Sbjct: 515 --SPGEKGEKGETGQAGSPGEKGEAGEKG--NPGAEVPGLPG 552
Score = 40.8 bits (94), Expect = 0.008
Identities = 31/89 (34%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Query: 448 PPAFYTSASPPG-PQFQGSSPHPQHIYSSGSSPGP--GPNMSQGHSSPVMHPGSPGHHPC 504
PPAF PG P +G+ P + S G + GP G PG PG
Sbjct: 120 PPAFQGPTGRPGLPGDKGAIGMPGRVGSPGDAGLSIIGPRGPPGQPGTRGFPGFPGPIGL 179
Query: 505 AGPPGLPVPQSPPLPPGPPEIVGPQNQAG 533
G PG P P+ GPP GPQ Q G
Sbjct: 180 DGKPGHPGPKGDMGLTGPPGQPGPQGQKG 208
Score = 40.8 bits (94), Expect = 0.008
Identities = 30/100 (30%), Positives = 38/100 (38%), Gaps = 10/100 (10%)
Query: 445 GRKPPAFYTSASPPGPQFQGSSPHPQ-HIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHP 503
G + P PPGP P P+ G+ G +G P+ PG+ G
Sbjct: 544 GAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDG 603
Query: 504 CAGPPGLPVPQSPPLPPGP---------PEIVGPQNQAGV 534
GPPG P P P P GP P + GP AG+
Sbjct: 604 RPGPPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGL 643
Score = 36.6 bits (83), Expect = 0.15
Identities = 26/77 (33%), Positives = 28/77 (36%), Gaps = 4/77 (5%)
Query: 482 GPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSPPLPPGPPEIVGPQNQAGVLVQPDTS 541
GP G P PG PG G PG P P G P +GP G P
Sbjct: 445 GPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQG----PPGK 500
Query: 542 LTPPSMGGAYHSPGFPG 558
PP + G PG PG
Sbjct: 501 DGPPGVKGENGHPGSPG 517
Score = 36.6 bits (83), Expect = 0.15
Identities = 22/65 (33%), Positives = 24/65 (36%)
Query: 469 PQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSPPLPPGPPEIVGP 528
P I G+ PG G P H G G G G P PQ PP GPP + G
Sbjct: 450 PGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGE 509
Query: 529 QNQAG 533
G
Sbjct: 510 NGHPG 514
Score = 36.2 bits (82), Expect = 0.19
Identities = 29/87 (33%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Query: 479 PGP-GPNMSQGHSSPVMHPGSP---GHHPCAGPPGLPVPQSPPLPPGPPEIV---GPQNQ 531
PGP GP G V PG P G AG G P+ PG E+V G N+
Sbjct: 374 PGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPDGPKGSKGEPGKGEMVDYNGNINE 433
Query: 532 AGVLVQPDTSLTPPSMGGAYHSPGFPG 558
A ++ + PP + G PG PG
Sbjct: 434 ALQEIRTLALMGPPGLPGQIGPPGAPG 460
Score = 32.3 bits (72), Expect = 2.8
Identities = 26/92 (28%), Positives = 31/92 (33%), Gaps = 19/92 (20%)
Query: 481 PGPNMSQGHSSPVMHPGSPGHHPCAGPPG-LPVPQSPPLPPGPPEIVGPQNQAGVLVQPD 539
PG N P PG PG G PG + P L I+GP+
Sbjct: 115 PGCNCPPAFQGPTGRPGLPGDKGAIGMPGRVGSPGDAGL-----SIIGPRG--------- 160
Query: 540 TSLTPPSMGGAYHSPGFPGHVMKVPRENHCSP 571
PP G PGFPG + + H P
Sbjct: 161 ----PPGQPGTRGFPGFPGPIGLDGKPGHPGP 188
Score = 32.3 bits (72), Expect = 2.8
Identities = 34/129 (26%), Positives = 45/129 (34%), Gaps = 32/129 (24%)
Query: 457 PPGPQF----------QGSSPHPQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHPCAG 506
PPGP+ +G P G+ PG ++ P + PG+ G G
Sbjct: 282 PPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGI-PGTKGEKGAEG 340
Query: 507 PPGLPV-----------------PQSPPLPPGPPEIVGPQNQAGVLVQPDTSLTPPSMGG 549
PGLP + P PPG P GP+ +AGV D + PP G
Sbjct: 341 SPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGV----DGQVGPPGQPG 396
Query: 550 AYHSPGFPG 558
G G
Sbjct: 397 DKGERGAAG 405
Score = 30.8 bits (68), Expect = 8.0
Identities = 31/107 (28%), Positives = 39/107 (36%), Gaps = 12/107 (11%)
Query: 460 PQFQGSSPHPQHIYSSGSSPGPGPNMSQGHSS-PVMHP-GSPGHHPCAGPPGLPVPQSPP 517
P FQG + P G+ PG S G + ++ P G PG G PG P P
Sbjct: 121 PAFQGPTGRPGLPGDKGAIGMPGRVGSPGDAGLSIIGPRGPPGQPGTRGFPGFPGPIGLD 180
Query: 518 LPPGPPEIVGPQNQAGVLVQPDTSLTPPSMGGAYHSPGFPGHVMKVP 564
PG P GP+ G+ PP G G G + P
Sbjct: 181 GKPGHP---GPKGDMGL-------TGPPGQPGPQGQKGEKGQCGEYP 217
>gi|22027571 alpha 1 type XIII collagen isoform 3 [Homo sapiens]
Length = 700
Score = 54.3 bits (129), Expect = 7e-07
Identities = 30/84 (35%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 457 PPGPQFQGSSPHPQHIYSSGSSPG-PGPNMSQGHSSPVMHPGSPGH-----HPCAGPPGL 510
PPGPQ P + PG PG +G + PG G +P A PGL
Sbjct: 493 PPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGL 552
Query: 511 PVPQSPPLPPGPPEIVGPQNQAGV 534
P P+ PP PPG + GP+ +AG+
Sbjct: 553 PGPEGPPGPPGLQGVPGPKGEAGL 576
Score = 42.7 bits (99), Expect = 0.002
Identities = 42/156 (26%), Positives = 57/156 (36%), Gaps = 32/156 (20%)
Query: 431 EIVVKPTVDLAHKIGRKPPAFYTSASPPGPQFQGSSPHPQHIYSSGSSPGPGPNMSQGHS 490
+I+ + L + + PP + G Q Q S P PGP
Sbjct: 216 QIIALKLLPLLNSVRLAPPPVIKRRTFQGEQSQASIQGP-----------PGP------- 257
Query: 491 SPVMHPGSPGHHPCAGPPGLPVPQSPPLPPGPPEIVGPQNQAGVLVQPDT--SLTPPSMG 548
PG PG G PGLP P PP PGPP GP+ G+ P M
Sbjct: 258 -----PGPPGPSGPLGHPGLPGPMGPPGLPGPP---GPKGDPGIQGYHGRKGERGMPGMP 309
Query: 549 GAYHSPGFPGHVMKVPRENHCSPGSSYQQ----SPG 580
G + + G PG + + PG+ ++ SPG
Sbjct: 310 GKHGAKGAPGIAVAGMKGEPGIPGTKGEKGAEGSPG 345
Score = 41.2 bits (95), Expect = 0.006
Identities = 32/102 (31%), Positives = 38/102 (37%), Gaps = 7/102 (6%)
Query: 481 PGPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSPPLPPGPPEIVGPQNQAGVLVQPDT 540
PG G + PG PGH GP G P PP P GPP GP G P
Sbjct: 458 PGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGENGHPG- 516
Query: 541 SLTPPSMG--GAYHSPGFPGHVMKVPRENHCSPGSSYQQSPG 580
+P G G G PG + + +PG+ PG
Sbjct: 517 --SPGEKGEKGETGQAGSPGEKGEAGEKG--NPGAEVPGLPG 554
Score = 40.8 bits (94), Expect = 0.008
Identities = 30/100 (30%), Positives = 38/100 (38%), Gaps = 10/100 (10%)
Query: 445 GRKPPAFYTSASPPGPQFQGSSPHPQ-HIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHP 503
G + P PPGP P P+ G+ G +G P+ PG+ G
Sbjct: 546 GAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDG 605
Query: 504 CAGPPGLPVPQSPPLPPGP---------PEIVGPQNQAGV 534
GPPG P P P P GP P + GP AG+
Sbjct: 606 RPGPPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGL 645
Score = 36.6 bits (83), Expect = 0.15
Identities = 26/77 (33%), Positives = 28/77 (36%), Gaps = 4/77 (5%)
Query: 482 GPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSPPLPPGPPEIVGPQNQAGVLVQPDTS 541
GP G P PG PG G PG P P G P +GP G P
Sbjct: 447 GPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQG----PPGK 502
Query: 542 LTPPSMGGAYHSPGFPG 558
PP + G PG PG
Sbjct: 503 DGPPGVKGENGHPGSPG 519
Score = 36.6 bits (83), Expect = 0.15
Identities = 22/65 (33%), Positives = 24/65 (36%)
Query: 469 PQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSPPLPPGPPEIVGP 528
P I G+ PG G P H G G G G P PQ PP GPP + G
Sbjct: 452 PGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGE 511
Query: 529 QNQAG 533
G
Sbjct: 512 NGHPG 516
Score = 36.2 bits (82), Expect = 0.19
Identities = 29/87 (33%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Query: 479 PGP-GPNMSQGHSSPVMHPGSP---GHHPCAGPPGLPVPQSPPLPPGPPEIV---GPQNQ 531
PGP GP G V PG P G AG G P+ PG E+V G N+
Sbjct: 376 PGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPDGPKGSKGEPGKGEMVDYNGNINE 435
Query: 532 AGVLVQPDTSLTPPSMGGAYHSPGFPG 558
A ++ + PP + G PG PG
Sbjct: 436 ALQEIRTLALMGPPGLPGQIGPPGAPG 462
Score = 35.8 bits (81), Expect = 0.25
Identities = 26/74 (35%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
Query: 460 PQFQGSSPHPQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSPPLP 519
P FQG + P G+ PG G PG PG G PG P P+
Sbjct: 121 PAFQGPTGRPGLPGDKGAIGMPG---RVGQPGTRGFPGFPGPIGLDGKPGHPGPKGDMGL 177
Query: 520 PGPPEIVGPQNQAG 533
GPP GPQ Q G
Sbjct: 178 TGPPGQPGPQGQKG 191
Score = 32.3 bits (72), Expect = 2.8
Identities = 34/129 (26%), Positives = 45/129 (34%), Gaps = 32/129 (24%)
Query: 457 PPGPQF----------QGSSPHPQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHPCAG 506
PPGP+ +G P G+ PG ++ P + PG+ G G
Sbjct: 284 PPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGI-PGTKGEKGAEG 342
Query: 507 PPGLPV-----------------PQSPPLPPGPPEIVGPQNQAGVLVQPDTSLTPPSMGG 549
PGLP + P PPG P GP+ +AGV D + PP G
Sbjct: 343 SPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGV----DGQVGPPGQPG 398
Query: 550 AYHSPGFPG 558
G G
Sbjct: 399 DKGERGAAG 407
Score = 30.8 bits (68), Expect = 8.0
Identities = 27/88 (30%), Positives = 31/88 (35%), Gaps = 6/88 (6%)
Query: 481 PGPNMSQGHSSPVMHPGSPGHHPCAGPP---GLPVPQSPPLPPGPPEIVGPQNQAGVLVQ 537
PG N P PG PG G P G P + P PGP + G G +
Sbjct: 115 PGCNCPPAFQGPTGRPGLPGDKGAIGMPGRVGQPGTRGFPGFPGPIGLDGKPGHPG--PK 172
Query: 538 PDTSLT-PPSMGGAYHSPGFPGHVMKVP 564
D LT PP G G G + P
Sbjct: 173 GDMGLTGPPGQPGPQGQKGEKGQCGEYP 200
>gi|22027568 alpha 1 type XIII collagen isoform 2 [Homo sapiens]
Length = 705
Score = 54.3 bits (129), Expect = 7e-07
Identities = 30/84 (35%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 457 PPGPQFQGSSPHPQHIYSSGSSPG-PGPNMSQGHSSPVMHPGSPGH-----HPCAGPPGL 510
PPGPQ P + PG PG +G + PG G +P A PGL
Sbjct: 498 PPGPQGPPGKDGPPGVKGENGHPGSPGEKGEKGETGQAGSPGEKGEAGEKGNPGAEVPGL 557
Query: 511 PVPQSPPLPPGPPEIVGPQNQAGV 534
P P+ PP PPG + GP+ +AG+
Sbjct: 558 PGPEGPPGPPGLQGVPGPKGEAGL 581
Score = 42.7 bits (99), Expect = 0.002
Identities = 42/156 (26%), Positives = 57/156 (36%), Gaps = 32/156 (20%)
Query: 431 EIVVKPTVDLAHKIGRKPPAFYTSASPPGPQFQGSSPHPQHIYSSGSSPGPGPNMSQGHS 490
+I+ + L + + PP + G Q Q S P PGP
Sbjct: 221 QIIALKLLPLLNSVRLAPPPVIKRRTFQGEQSQASIQGP-----------PGP------- 262
Query: 491 SPVMHPGSPGHHPCAGPPGLPVPQSPPLPPGPPEIVGPQNQAGVLVQPDT--SLTPPSMG 548
PG PG G PGLP P PP PGPP GP+ G+ P M
Sbjct: 263 -----PGPPGPSGPLGHPGLPGPMGPPGLPGPP---GPKGDPGIQGYHGRKGERGMPGMP 314
Query: 549 GAYHSPGFPGHVMKVPRENHCSPGSSYQQ----SPG 580
G + + G PG + + PG+ ++ SPG
Sbjct: 315 GKHGAKGAPGIAVAGMKGEPGIPGTKGEKGAEGSPG 350
Score = 41.2 bits (95), Expect = 0.006
Identities = 32/102 (31%), Positives = 38/102 (37%), Gaps = 7/102 (6%)
Query: 481 PGPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSPPLPPGPPEIVGPQNQAGVLVQPDT 540
PG G + PG PGH GP G P PP P GPP GP G P
Sbjct: 463 PGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGENGHPG- 521
Query: 541 SLTPPSMG--GAYHSPGFPGHVMKVPRENHCSPGSSYQQSPG 580
+P G G G PG + + +PG+ PG
Sbjct: 522 --SPGEKGEKGETGQAGSPGEKGEAGEKG--NPGAEVPGLPG 559
Score = 40.8 bits (94), Expect = 0.008
Identities = 30/100 (30%), Positives = 38/100 (38%), Gaps = 10/100 (10%)
Query: 445 GRKPPAFYTSASPPGPQFQGSSPHPQ-HIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHP 503
G + P PPGP P P+ G+ G +G P+ PG+ G
Sbjct: 551 GAEVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDG 610
Query: 504 CAGPPGLPVPQSPPLPPGP---------PEIVGPQNQAGV 534
GPPG P P P P GP P + GP AG+
Sbjct: 611 RPGPPGTPGPIGVPGPAGPKGERGSKGDPGMTGPTGAAGL 650
Score = 37.0 bits (84), Expect = 0.11
Identities = 28/80 (35%), Positives = 30/80 (37%), Gaps = 10/80 (12%)
Query: 460 PQFQGSSPHPQHIYSSGSSPGP------GPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVP 513
P FQG + P SPG GP G PG PG G PG P P
Sbjct: 121 PAFQGPTGRP----GLPGSPGDAGLSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGHPGP 176
Query: 514 QSPPLPPGPPEIVGPQNQAG 533
+ GPP GPQ Q G
Sbjct: 177 KGDMGLTGPPGQPGPQGQKG 196
Score = 36.6 bits (83), Expect = 0.15
Identities = 26/77 (33%), Positives = 28/77 (36%), Gaps = 4/77 (5%)
Query: 482 GPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSPPLPPGPPEIVGPQNQAGVLVQPDTS 541
GP G P PG PG G PG P P G P +GP G P
Sbjct: 452 GPPGLPGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQG----PPGK 507
Query: 542 LTPPSMGGAYHSPGFPG 558
PP + G PG PG
Sbjct: 508 DGPPGVKGENGHPGSPG 524
Score = 36.6 bits (83), Expect = 0.15
Identities = 22/65 (33%), Positives = 24/65 (36%)
Query: 469 PQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHPCAGPPGLPVPQSPPLPPGPPEIVGP 528
P I G+ PG G P H G G G G P PQ PP GPP + G
Sbjct: 457 PGQIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGDMGPPGPQGPPGKDGPPGVKGE 516
Query: 529 QNQAG 533
G
Sbjct: 517 NGHPG 521
Score = 36.2 bits (82), Expect = 0.19
Identities = 29/87 (33%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Query: 479 PGP-GPNMSQGHSSPVMHPGSP---GHHPCAGPPGLPVPQSPPLPPGPPEIV---GPQNQ 531
PGP GP G V PG P G AG G P+ PG E+V G N+
Sbjct: 381 PGPPGPKGEAGVDGQVGPPGQPGDKGERGAAGEQGPDGPKGSKGEPGKGEMVDYNGNINE 440
Query: 532 AGVLVQPDTSLTPPSMGGAYHSPGFPG 558
A ++ + PP + G PG PG
Sbjct: 441 ALQEIRTLALMGPPGLPGQIGPPGAPG 467
Score = 32.7 bits (73), Expect = 2.1
Identities = 29/93 (31%), Positives = 33/93 (35%), Gaps = 11/93 (11%)
Query: 481 PGPNMSQGHSSPVMHPGSPGHHPCA--------GPPGLPVPQSPPLPPGPPEIVGPQNQA 532
PG N P PG PG A GPPG P + P PGP + G
Sbjct: 115 PGCNCPPAFQGPTGRPGLPGSPGDAGLSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGHP 174
Query: 533 GVLVQPDTSLT-PPSMGGAYHSPGFPGHVMKVP 564
G + D LT PP G G G + P
Sbjct: 175 G--PKGDMGLTGPPGQPGPQGQKGEKGQCGEYP 205
Score = 32.3 bits (72), Expect = 2.8
Identities = 34/129 (26%), Positives = 45/129 (34%), Gaps = 32/129 (24%)
Query: 457 PPGPQF----------QGSSPHPQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHPCAG 506
PPGP+ +G P G+ PG ++ P + PG+ G G
Sbjct: 289 PPGPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGI-PGTKGEKGAEG 347
Query: 507 PPGLPV-----------------PQSPPLPPGPPEIVGPQNQAGVLVQPDTSLTPPSMGG 549
PGLP + P PPG P GP+ +AGV D + PP G
Sbjct: 348 SPGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGV----DGQVGPPGQPG 403
Query: 550 AYHSPGFPG 558
G G
Sbjct: 404 DKGERGAAG 412
Score = 31.6 bits (70), Expect = 4.7
Identities = 38/133 (28%), Positives = 43/133 (32%), Gaps = 33/133 (24%)
Query: 457 PPG-PQFQGSSPHPQHIYSSGSSPGPGPNMSQGHSSPVMHPGSPGHHPCAGPPG------ 509
PPG P +G P I G PGP G + P PG G G G
Sbjct: 149 PPGQPGTRGFPGFPGPIGLDGKPGHPGPKGDMGLTGPPGQPGPQGQKGEKGQCGEYPHRE 208
Query: 510 -------------------LPVPQSPPLPPGPPEI-----VGPQNQAGVLVQPDTSLTPP 545
LP+ S L P PP I G Q+QA + P PP
Sbjct: 209 CLSSMPAALRSSQIIALKLLPLLNSVRLAP-PPVIKRRTFQGEQSQASIQGPPGPP-GPP 266
Query: 546 SMGGAYHSPGFPG 558
G PG PG
Sbjct: 267 GPSGPLGHPGLPG 279
Score = 31.2 bits (69), Expect = 6.1
Identities = 24/79 (30%), Positives = 28/79 (35%), Gaps = 21/79 (26%)
Query: 498 SPGHHPCAGPPGLPVPQSPPLPPGPP-----EIVGPQNQAGVLVQPDTSLTPPSMGGAYH 552
SPG C PP P P PG P I+GP+ PP G
Sbjct: 114 SPG---CNCPPAFQGPTGRPGLPGSPGDAGLSIIGPRG-------------PPGQPGTRG 157
Query: 553 SPGFPGHVMKVPRENHCSP 571
PGFPG + + H P
Sbjct: 158 FPGFPGPIGLDGKPGHPGP 176
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.131 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,857,910
Number of Sequences: 37866
Number of extensions: 3778334
Number of successful extensions: 47256
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 1223
Number of HSP's that attempted gapping in prelim test: 21225
Number of HSP's gapped (non-prelim): 14180
length of query: 1189
length of database: 18,247,518
effective HSP length: 113
effective length of query: 1076
effective length of database: 13,968,660
effective search space: 15030278160
effective search space used: 15030278160
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 68 (30.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.