Guide to the Human Genome
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Name: TBC1D30 Sequence: fasta or formatted (761aa) NCBI GI: 239755853
Description:

PREDICTED: TBC1 domain family, member 30

Referenced in:

Rab

Other entries for this name:
alt mRNA [761aa] PREDICTED: TBC1 domain family, member 30
alt prot [761aa] PREDICTED: TBC1 domain family, member 30
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         53           3
 C cysteine            2.0         15           2
 D aspartate           4.5         34           3
 E glutamate           6.4         49           2
 F phenylalanine       3.3         25           2
 G glycine             7.0         53           3
 H histidine           2.2         17           1
 I isoleucine          4.3         33           2
 K lysine              6.6         50           3
 L leucine             9.2         70           3
 M methionine          2.6         20           3
 N asparagine          4.6         35           2
 P proline             6.4         49           2
 Q glutamine           4.7         36           4
 R arginine            6.2         47           2
 S serine              7.6         58           2
 T threonine           6.4         49           2
 V valine              5.4         41           2
 W tryptophan          1.2          9           1
 Y tyrosine            2.4         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: TBC1 domain family, member 30 
TBC1D30               1.000   PREDICTED: TBC1 domain family, member 30 
TBC1D30               1.000   PREDICTED: TBC1 domain family, member 30 
TBC1D2B               0.055   TBC1 domain family, member 2B isoform a 
TBC1D2B               0.054   TBC1 domain family, member 2B isoform b 
TBC1D2                0.053   TBC1 domain family, member 2 
TBC1D9B               0.053   TBC1 domain family, member 9B (with GRAM domain) iso...
TBC1D9B               0.053   TBC1 domain family, member 9B (with GRAM domain) iso...
SGSM3                 0.051   small G protein signaling modulator 3 
GRTP1                 0.049   growth hormone regulated TBC protein 1 
TBC1D8                0.048   TBC1 domain family, member 8 
TBC1D9                0.045   TBC1 domain family, member 9 (with GRAM domain) [Ho...
TBC1D8B               0.045   TBC1 domain family, member 8B (with GRAM domain) iso...
TBC1D10B              0.043   TBC1 domain family, member 10B 
TBC1D10C              0.035   TBC1 domain family, member 10C 
TBC1D1                0.033   TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member...
TBC1D10A              0.033   TBC1 domain family, member 10A 
RABGAP1L              0.032   RAB GTPase activating protein 1-like isoform A [Homo...
EVI5L                 0.030   ecotropic viral integration site 5-like isoform 1 [...
EVI5L                 0.030   ecotropic viral integration site 5-like isoform 2 [H...
USP6NL                0.030   USP6 N-terminal like isoform 1 
USP6NL                0.030   USP6 N-terminal like isoform 2 
TBC1D4                0.030   TBC1 domain family, member 4 
EVI5                  0.030   ecotropic viral integration site 5 
RABGAP1               0.026   RAB GTPase activating protein 1 
TBC1D12               0.026   TBC1 domain family, member 12 
TBCKL                 0.023   TBC domain-containing protein kinase-like 
TBC1D14               0.022   TBC1 domain family, member 14 isoform b 
TBC1D14               0.022   TBC1 domain family, member 14 isoform a 
TBC1D14               0.022   TBC1 domain family, member 14 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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