Guide to the Human Genome
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Name: LOC100293322 Sequence: fasta or formatted (262aa) NCBI GI: 239753791
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.8         23           3
 C cysteine            1.1          3           1
 D aspartate           4.2         11           1
 E glutamate           5.0         13           1
 F phenylalanine       5.3         14           4
 G glycine            16.8         44           2
 H histidine           1.1          3           1
 I isoleucine          1.9          5           1
 K lysine              1.5          4           1
 L leucine             8.4         22           2
 M methionine          0.4          1           1
 N asparagine          2.7          7           3
 P proline             6.5         17           3
 Q glutamine           2.7          7           2
 R arginine            5.7         15           1
 S serine             16.0         42           3
 T threonine           5.3         14           1
 V valine              5.3         14           2
 W tryptophan          0.8          2           1
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
MLL                   0.030   myeloid/lymphoid or mixed-lineage leukemia protein [...
CDSN                  0.028   corneodesmosin precursor 
CADPS                 0.028   Ca2+-dependent secretion activator isoform 2 
CADPS                 0.028   Ca2+-dependent secretion activator isoform 1 
CADPS                 0.028   Ca2+-dependent secretion activator isoform 3 
SCRT1                 0.028   scratch 
ZIC2                  0.028   zinc finger protein of the cerebellum 2 
ZBTB22                0.026   zinc finger and BTB domain containing 22 
ZBTB22                0.026   zinc finger and BTB domain containing 22 
KRT2                  0.026   keratin 2 
ELN                   0.024   elastin isoform e precursor 
ELN                   0.024   elastin isoform d precursor 
ELN                   0.024   elastin isoform c precursor 
ELN                   0.024   elastin isoform b precursor 
ELN                   0.024   elastin isoform a precursor 
DACH1                 0.024   dachshund homolog 1 isoform b 
DACH1                 0.024   dachshund homolog 1 isoform a 
DACH1                 0.024   dachshund homolog 1 isoform c 
BHLHE22               0.024   basic helix-loop-helix domain containing, class B, 5...
ONECUT3               0.024   one cut homeobox 3 
MAFA                  0.022   v-maf musculoaponeurotic fibrosarcoma oncogene homol...
KIF26B                0.022   kinesin family member 26B 
KRT24                 0.020   keratin 24 
GATA4                 0.020   GATA binding protein 4 
LOR                   0.020   loricrin 
FOXP3                 0.020   forkhead box P3 isoform b 
DMKN                  0.020   dermokine isoform 4 precursor 
DMKN                  0.020   dermokine isoform 5 precursor 
DMKN                  0.020   dermokine isoform 3 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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