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Search of human proteins with 239753623
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239753623 PREDICTED: hypothetical protein [Homo sapiens]
(224 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753623 PREDICTED: hypothetical protein [Homo sapiens] 461 e-130
gi|239748202 PREDICTED: hypothetical protein XP_002346594 [Homo ... 461 e-130
gi|239742100 PREDICTED: hypothetical protein XP_002342435 [Homo ... 461 e-130
gi|38570075 collagen, type XXV, alpha 1 isoform 1 [Homo sapiens] 37 0.018
gi|38570073 collagen, type XXV, alpha 1 isoform 2 [Homo sapiens] 37 0.018
gi|239751929 PREDICTED: hypothetical protein [Homo sapiens] 36 0.023
gi|239746415 PREDICTED: hypothetical protein XP_002344217 [Homo ... 36 0.023
gi|169167792 PREDICTED: similar to hCG1745223 [Homo sapiens] 35 0.040
gi|169210434 PREDICTED: hypothetical protein [Homo sapiens] 35 0.040
gi|88987622 PREDICTED: similar to hCG1745223 [Homo sapiens] 35 0.040
gi|51464815 PREDICTED: similar to hCG1745223 [Homo sapiens] 35 0.040
gi|57222570 codanin 1 [Homo sapiens] 35 0.052
gi|239756804 PREDICTED: hypothetical protein [Homo sapiens] 35 0.068
gi|239751298 PREDICTED: hypothetical protein XP_002347799 [Homo ... 35 0.068
gi|239745795 PREDICTED: hypothetical protein XP_002343591 [Homo ... 35 0.068
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 34 0.089
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 34 0.12
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 34 0.12
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 34 0.12
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 34 0.12
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 33 0.15
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 33 0.15
gi|154759257 DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 [Homo sap... 33 0.15
gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo ... 33 0.20
gi|239747641 PREDICTED: hypothetical protein XP_002347916 [Homo ... 33 0.20
gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo ... 33 0.20
gi|29648305 zinc finger, CCHC domain containing 3 [Homo sapiens] 33 0.20
gi|239754253 PREDICTED: hypothetical protein XP_002345936 [Homo ... 33 0.26
gi|239748791 PREDICTED: hypothetical protein XP_002346804 [Homo ... 33 0.26
gi|239742828 PREDICTED: hypothetical protein XP_002342673 [Homo ... 33 0.26
>gi|239753623 PREDICTED: hypothetical protein [Homo sapiens]
Length = 224
Score = 461 bits (1187), Expect = e-130
Identities = 224/224 (100%), Positives = 224/224 (100%)
Query: 1 MEDELSIHKHRKHRQVNRESPAYRSWKCFSLGKDQLSSRTLKKTKHSEVAWKKTHLQSLE 60
MEDELSIHKHRKHRQVNRESPAYRSWKCFSLGKDQLSSRTLKKTKHSEVAWKKTHLQSLE
Sbjct: 1 MEDELSIHKHRKHRQVNRESPAYRSWKCFSLGKDQLSSRTLKKTKHSEVAWKKTHLQSLE 60
Query: 61 EQRNLPGQHLFLLANHNKDRVVEILRGTVHIHPHGLSYLVGLAGVVERVDVLGAEVHHPA 120
EQRNLPGQHLFLLANHNKDRVVEILRGTVHIHPHGLSYLVGLAGVVERVDVLGAEVHHPA
Sbjct: 61 EQRNLPGQHLFLLANHNKDRVVEILRGTVHIHPHGLSYLVGLAGVVERVDVLGAEVHHPA 120
Query: 121 VDMIEIGAPGSVEGVAARCRGLPGGFRRVPGRRRQQEPGQRAEQREPQAAAHGGHRARAR 180
VDMIEIGAPGSVEGVAARCRGLPGGFRRVPGRRRQQEPGQRAEQREPQAAAHGGHRARAR
Sbjct: 121 VDMIEIGAPGSVEGVAARCRGLPGGFRRVPGRRRQQEPGQRAEQREPQAAAHGGHRARAR 180
Query: 181 KRSHPGEGASAERVLPKPGAGPGVRFRAERVMPGEPSRPGLAAC 224
KRSHPGEGASAERVLPKPGAGPGVRFRAERVMPGEPSRPGLAAC
Sbjct: 181 KRSHPGEGASAERVLPKPGAGPGVRFRAERVMPGEPSRPGLAAC 224
>gi|239748202 PREDICTED: hypothetical protein XP_002346594 [Homo
sapiens]
Length = 224
Score = 461 bits (1187), Expect = e-130
Identities = 224/224 (100%), Positives = 224/224 (100%)
Query: 1 MEDELSIHKHRKHRQVNRESPAYRSWKCFSLGKDQLSSRTLKKTKHSEVAWKKTHLQSLE 60
MEDELSIHKHRKHRQVNRESPAYRSWKCFSLGKDQLSSRTLKKTKHSEVAWKKTHLQSLE
Sbjct: 1 MEDELSIHKHRKHRQVNRESPAYRSWKCFSLGKDQLSSRTLKKTKHSEVAWKKTHLQSLE 60
Query: 61 EQRNLPGQHLFLLANHNKDRVVEILRGTVHIHPHGLSYLVGLAGVVERVDVLGAEVHHPA 120
EQRNLPGQHLFLLANHNKDRVVEILRGTVHIHPHGLSYLVGLAGVVERVDVLGAEVHHPA
Sbjct: 61 EQRNLPGQHLFLLANHNKDRVVEILRGTVHIHPHGLSYLVGLAGVVERVDVLGAEVHHPA 120
Query: 121 VDMIEIGAPGSVEGVAARCRGLPGGFRRVPGRRRQQEPGQRAEQREPQAAAHGGHRARAR 180
VDMIEIGAPGSVEGVAARCRGLPGGFRRVPGRRRQQEPGQRAEQREPQAAAHGGHRARAR
Sbjct: 121 VDMIEIGAPGSVEGVAARCRGLPGGFRRVPGRRRQQEPGQRAEQREPQAAAHGGHRARAR 180
Query: 181 KRSHPGEGASAERVLPKPGAGPGVRFRAERVMPGEPSRPGLAAC 224
KRSHPGEGASAERVLPKPGAGPGVRFRAERVMPGEPSRPGLAAC
Sbjct: 181 KRSHPGEGASAERVLPKPGAGPGVRFRAERVMPGEPSRPGLAAC 224
>gi|239742100 PREDICTED: hypothetical protein XP_002342435 [Homo
sapiens]
Length = 224
Score = 461 bits (1187), Expect = e-130
Identities = 224/224 (100%), Positives = 224/224 (100%)
Query: 1 MEDELSIHKHRKHRQVNRESPAYRSWKCFSLGKDQLSSRTLKKTKHSEVAWKKTHLQSLE 60
MEDELSIHKHRKHRQVNRESPAYRSWKCFSLGKDQLSSRTLKKTKHSEVAWKKTHLQSLE
Sbjct: 1 MEDELSIHKHRKHRQVNRESPAYRSWKCFSLGKDQLSSRTLKKTKHSEVAWKKTHLQSLE 60
Query: 61 EQRNLPGQHLFLLANHNKDRVVEILRGTVHIHPHGLSYLVGLAGVVERVDVLGAEVHHPA 120
EQRNLPGQHLFLLANHNKDRVVEILRGTVHIHPHGLSYLVGLAGVVERVDVLGAEVHHPA
Sbjct: 61 EQRNLPGQHLFLLANHNKDRVVEILRGTVHIHPHGLSYLVGLAGVVERVDVLGAEVHHPA 120
Query: 121 VDMIEIGAPGSVEGVAARCRGLPGGFRRVPGRRRQQEPGQRAEQREPQAAAHGGHRARAR 180
VDMIEIGAPGSVEGVAARCRGLPGGFRRVPGRRRQQEPGQRAEQREPQAAAHGGHRARAR
Sbjct: 121 VDMIEIGAPGSVEGVAARCRGLPGGFRRVPGRRRQQEPGQRAEQREPQAAAHGGHRARAR 180
Query: 181 KRSHPGEGASAERVLPKPGAGPGVRFRAERVMPGEPSRPGLAAC 224
KRSHPGEGASAERVLPKPGAGPGVRFRAERVMPGEPSRPGLAAC
Sbjct: 181 KRSHPGEGASAERVLPKPGAGPGVRFRAERVMPGEPSRPGLAAC 224
>gi|38570075 collagen, type XXV, alpha 1 isoform 1 [Homo sapiens]
Length = 654
Score = 36.6 bits (83), Expect = 0.018
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 12/100 (12%)
Query: 126 IGAPGSVEGVAARCR--GLPG--GFRRVPGRRRQQEPGQRAEQREPQAAAHGGHRARARK 181
IGAPG + G+ + GLPG G +PG + EPG++ E+ + A G + +
Sbjct: 248 IGAPG-IPGMNGQKGEPGLPGAVGQNGIPGPKG--EPGEQGEKGD---AGENGPKGDTGE 301
Query: 182 RSHPGEGASAERVLPKPGAGPGVRFRAERVMPGEPSRPGL 221
+ PG A+ + P PG + E +PG P PG+
Sbjct: 302 KGDPGSSAAGIKGEPGESGRPGQ--KGEPGLPGLPGLPGI 339
>gi|38570073 collagen, type XXV, alpha 1 isoform 2 [Homo sapiens]
Length = 642
Score = 36.6 bits (83), Expect = 0.018
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 12/100 (12%)
Query: 126 IGAPGSVEGVAARCR--GLPG--GFRRVPGRRRQQEPGQRAEQREPQAAAHGGHRARARK 181
IGAPG + G+ + GLPG G +PG + EPG++ E+ + A G + +
Sbjct: 248 IGAPG-IPGMNGQKGEPGLPGAVGQNGIPGPKG--EPGEQGEKGD---AGENGPKGDTGE 301
Query: 182 RSHPGEGASAERVLPKPGAGPGVRFRAERVMPGEPSRPGL 221
+ PG A+ + P PG + E +PG P PG+
Sbjct: 302 KGDPGSSAAGIKGEPGESGRPGQ--KGEPGLPGLPGLPGI 339
>gi|239751929 PREDICTED: hypothetical protein [Homo sapiens]
Length = 382
Score = 36.2 bits (82), Expect = 0.023
Identities = 31/104 (29%), Positives = 39/104 (37%), Gaps = 10/104 (9%)
Query: 118 HPAVDMIEIGAPGSVEGVAARCRGLPGGFRRVPGRRRQQEPGQRAEQREPQAAAHGGHRA 177
H ++ G V+ A R PG R P R P QR+ +P R
Sbjct: 32 HAQRHVVHRGDAARVDAAALRAAARPGPLGRPPTRAG---PAQRSSCTQPHR-----RRR 83
Query: 178 RARKRSHPGEGASAERVLPKPGAGPGVRFRAERVMPGEPSRPGL 221
R +R P + +PG G R RA RV P P R GL
Sbjct: 84 RGTRRLPPALTPAGPYHSARPGGG--ARARAARVSPPTPPRSGL 125
>gi|239746415 PREDICTED: hypothetical protein XP_002344217 [Homo
sapiens]
Length = 382
Score = 36.2 bits (82), Expect = 0.023
Identities = 31/104 (29%), Positives = 39/104 (37%), Gaps = 10/104 (9%)
Query: 118 HPAVDMIEIGAPGSVEGVAARCRGLPGGFRRVPGRRRQQEPGQRAEQREPQAAAHGGHRA 177
H ++ G V+ A R PG R P R P QR+ +P R
Sbjct: 32 HAQRHVVHRGDAARVDAAALRAAARPGPLGRPPTRAG---PAQRSSCTQPHR-----RRR 83
Query: 178 RARKRSHPGEGASAERVLPKPGAGPGVRFRAERVMPGEPSRPGL 221
R +R P + +PG G R RA RV P P R GL
Sbjct: 84 RGTRRLPPALTPAGPYHSARPGGG--ARARAARVSPPTPPRSGL 125
>gi|169167792 PREDICTED: similar to hCG1745223 [Homo sapiens]
Length = 320
Score = 35.4 bits (80), Expect = 0.040
Identities = 34/115 (29%), Positives = 45/115 (39%), Gaps = 17/115 (14%)
Query: 110 DVLGAEVHHPAVDMIEIGAPGSVEGVAARCRGLPGGFRRVPGRRRQQEPGQRAEQREPQA 169
D+L A+ PAVD E+ P R PG VP R + P +A R +
Sbjct: 200 DLLSADSGLPAVDQGEVAGPRLQPAQPLR----PGA---VPSASRARAPDTKAGTR-ARD 251
Query: 170 AAHGGHRARARKRSHPGEGASAERVLPKPGAGPGVRFRAERVMPGEPSRPGLAAC 224
A G + RA H G G + L P P +P E + GLA+C
Sbjct: 252 PAPGASQLRAAHSPHRGGGGAPRTQLAAPPRPP---------LPQENAAAGLASC 297
>gi|169210434 PREDICTED: hypothetical protein [Homo sapiens]
Length = 301
Score = 35.4 bits (80), Expect = 0.040
Identities = 32/102 (31%), Positives = 40/102 (39%), Gaps = 15/102 (14%)
Query: 127 GAPGSVEGVAARCRGLPGGFRRVPGRRRQQEPGQRAEQRE--------PQAAAHGGHRAR 178
GAP A + RG G + R R Q+ G+ E R P +G RA
Sbjct: 82 GAPARTRAHAHKGRG--AGKLVIQARTRAQKGGKGEETRRGPAPAGLTPSVCLYG--RAP 137
Query: 179 ARKRSHPGEGASAERVLPKPGAGPGVRFRAERVMPGEPSRPG 220
R+ PG A R P+ G G V AER +PS G
Sbjct: 138 TASRTGPGAPAEGARAAPREGGGEAV---AERCARSQPSWEG 176
>gi|88987622 PREDICTED: similar to hCG1745223 [Homo sapiens]
Length = 320
Score = 35.4 bits (80), Expect = 0.040
Identities = 34/115 (29%), Positives = 45/115 (39%), Gaps = 17/115 (14%)
Query: 110 DVLGAEVHHPAVDMIEIGAPGSVEGVAARCRGLPGGFRRVPGRRRQQEPGQRAEQREPQA 169
D+L A+ PAVD E+ P R PG VP R + P +A R +
Sbjct: 200 DLLSADSGLPAVDQGEVAGPRLQPAQPLR----PGA---VPSASRARAPDTKAGTR-ARD 251
Query: 170 AAHGGHRARARKRSHPGEGASAERVLPKPGAGPGVRFRAERVMPGEPSRPGLAAC 224
A G + RA H G G + L P P +P E + GLA+C
Sbjct: 252 PAPGASQLRAAHSPHRGGGGAPRTQLAAPPRPP---------LPQENAAAGLASC 297
>gi|51464815 PREDICTED: similar to hCG1745223 [Homo sapiens]
Length = 319
Score = 35.4 bits (80), Expect = 0.040
Identities = 34/115 (29%), Positives = 45/115 (39%), Gaps = 17/115 (14%)
Query: 110 DVLGAEVHHPAVDMIEIGAPGSVEGVAARCRGLPGGFRRVPGRRRQQEPGQRAEQREPQA 169
D+L A+ PAVD E+ P R PG VP R + P +A R +
Sbjct: 199 DLLSADSGLPAVDQGEVAGPRLQPAQPLR----PGA---VPSASRARAPDTKAGTR-ARD 250
Query: 170 AAHGGHRARARKRSHPGEGASAERVLPKPGAGPGVRFRAERVMPGEPSRPGLAAC 224
A G + RA H G G + L P P +P E + GLA+C
Sbjct: 251 PAPGASQLRAAHSPHRGGGGAPRTQLAAPPRPP---------LPQENAAAGLASC 296
>gi|57222570 codanin 1 [Homo sapiens]
Length = 1227
Score = 35.0 bits (79), Expect = 0.052
Identities = 38/100 (38%), Positives = 44/100 (44%), Gaps = 18/100 (18%)
Query: 129 PGSVEGVAARCRGLPGGFRRVPGRRRQQEPGQRAEQREPQA--AAHGGHR---ARARKRS 183
PG+ + R G P G R G R Q P A+ +A A GG R AR+R
Sbjct: 76 PGASAALPGRPGGPPRGSR---GARSQLFPPTEAQSTAAEAPLARRGGRRRGPGPARERG 132
Query: 184 HPG--EGASAERVLPKPGAGPGVRFRAERVMPGEPSRPGL 221
G EG S E + PGAG G R R G PSRP L
Sbjct: 133 GRGLEEGVSGESL---PGAG-GRRLRGS----GSPSRPSL 164
>gi|239756804 PREDICTED: hypothetical protein [Homo sapiens]
Length = 236
Score = 34.7 bits (78), Expect = 0.068
Identities = 39/135 (28%), Positives = 53/135 (39%), Gaps = 23/135 (17%)
Query: 76 HNKDRVVEILRG-TVHIHPHGLSYLVGLAGVVERVDV---LGAEVHHPAVDMIEIGAPGS 131
H RV R T +HP G G +G + L A A + +GA +
Sbjct: 96 HPSGRVAAQARAATGGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLLGAGRA 155
Query: 132 VEGVAARCRGLPGGFRRVPGRRRQQEPGQRAEQREPQ--------AAAHGGHRARA--RK 181
V+G A+ R PGG QQ+ G AE + + A GG R RA R+
Sbjct: 156 VDGFVAQARPGPGG---------QQQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERR 206
Query: 182 RSHPGEGASAERVLP 196
R+H G + R P
Sbjct: 207 RAHGGSAWRSWRTRP 221
>gi|239751298 PREDICTED: hypothetical protein XP_002347799 [Homo
sapiens]
Length = 236
Score = 34.7 bits (78), Expect = 0.068
Identities = 39/135 (28%), Positives = 53/135 (39%), Gaps = 23/135 (17%)
Query: 76 HNKDRVVEILRG-TVHIHPHGLSYLVGLAGVVERVDV---LGAEVHHPAVDMIEIGAPGS 131
H RV R T +HP G G +G + L A A + +GA +
Sbjct: 96 HPSGRVAAQARAATGGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLLGAGRA 155
Query: 132 VEGVAARCRGLPGGFRRVPGRRRQQEPGQRAEQREPQ--------AAAHGGHRARA--RK 181
V+G A+ R PGG QQ+ G AE + + A GG R RA R+
Sbjct: 156 VDGFVAQARPGPGG---------QQQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERR 206
Query: 182 RSHPGEGASAERVLP 196
R+H G + R P
Sbjct: 207 RAHGGSAWRSWRTRP 221
>gi|239745795 PREDICTED: hypothetical protein XP_002343591 [Homo
sapiens]
Length = 236
Score = 34.7 bits (78), Expect = 0.068
Identities = 39/135 (28%), Positives = 53/135 (39%), Gaps = 23/135 (17%)
Query: 76 HNKDRVVEILRG-TVHIHPHGLSYLVGLAGVVERVDV---LGAEVHHPAVDMIEIGAPGS 131
H RV R T +HP G G +G + L A A + +GA +
Sbjct: 96 HPSGRVAAQARAATGGVHPAGHPQAQGASGATAAARLSHQLLAAHGGAAARQLLLGAGRA 155
Query: 132 VEGVAARCRGLPGGFRRVPGRRRQQEPGQRAEQREPQ--------AAAHGGHRARA--RK 181
V+G A+ R PGG QQ+ G AE + + A GG R RA R+
Sbjct: 156 VDGFVAQARPGPGG---------QQQGGHEAEGQHDRPRTGRGRGALGAGGERGRAGERR 206
Query: 182 RSHPGEGASAERVLP 196
R+H G + R P
Sbjct: 207 RAHGGSAWRSWRTRP 221
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 34.3 bits (77), Expect = 0.089
Identities = 31/100 (31%), Positives = 37/100 (37%), Gaps = 12/100 (12%)
Query: 127 GAPGSVEGVAARCRGLPG--GFRRVPGRRRQQ---EPGQRAEQREPQAAAHGGHRARARK 181
G PG GLPG G + PG EPG + ++ P G RA +
Sbjct: 2290 GEPGPTGAPGQAVVGLPGAKGEKGAPGGLAGDLVGEPGAKGDRGLPGPRGEKGEAGRAGE 2349
Query: 182 RSHPGEGASAERVLPKPGAG-PGVRFRAERVMPGEPSRPG 220
PGE PK G PGV +PG P PG
Sbjct: 2350 PGDPGEDGQKGAPGPKGFKGDPGVG------VPGSPGPPG 2383
Score = 32.3 bits (72), Expect = 0.34
Identities = 34/97 (35%), Positives = 38/97 (39%), Gaps = 16/97 (16%)
Query: 125 EIGAPGSVEGVAARCRGLPGGFRRVPGRRRQQEPGQRAEQREPQAAAHGGHRARARKRSH 184
E GAPG V G GLPG + PG PG R +P G A K
Sbjct: 1348 EPGAPGQVIG--GEGPGLPGR-KGDPGP--SGPPGPRGPLGDPGPRGPPGLPGTAMKGD- 1401
Query: 185 PGEGASAERVLPKPGAGPGVRFRAERVMPGEPSRPGL 221
+G ER P PG G + PGEP PGL
Sbjct: 1402 --KGDRGERGPPGPGEGG--------IAPGEPGLPGL 1428
Score = 30.4 bits (67), Expect = 1.3
Identities = 34/105 (32%), Positives = 42/105 (40%), Gaps = 16/105 (15%)
Query: 127 GAPGSVEGVAARCR-GLPGGFRRV----PGRRRQQEPGQRAEQREPQAAAHGGHRARARK 181
G+PGS R G PG R+ PG R + EPG R ++ G +
Sbjct: 1685 GSPGSSGPKGDRGEPGPPGPPGRLVDTGPGAREKGEPGDRGQE------GPRGPKGDPGL 1738
Query: 182 RSHPGE-GASAERVLPKPGAGPGVR----FRAERVMPGEPSRPGL 221
PGE G R P P PGVR + +R PG R GL
Sbjct: 1739 PGAPGERGIEGFRGPPGPQGDPGVRGPAGEKGDRGPPGLDGRSGL 1783
Score = 27.7 bits (60), Expect = 8.3
Identities = 31/108 (28%), Positives = 41/108 (37%), Gaps = 17/108 (15%)
Query: 119 PAVDMIEIGAPGSVEGVAARCR--GLPGGFRRVPGRRRQQEPGQRAEQREPQAAAHGGHR 176
P + + E G PG G+A G+PG R G PG+R E+ E G R
Sbjct: 2017 PGLALGERGPPGP-SGLAGEPGKPGIPGLPGRAGGVGEAGRPGERGERGEK------GER 2069
Query: 177 ARARKRSHPGEGASAERVLPKPGAGPGVRFRAERVMP---GEPSRPGL 221
+ PG + P P PG + + P GE PGL
Sbjct: 2070 GEQGRDGPPGLPGT-----PGPPGPPGPKVSVDEPGPGLSGEQGPPGL 2112
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 33.9 bits (76), Expect = 0.12
Identities = 30/96 (31%), Positives = 38/96 (39%), Gaps = 16/96 (16%)
Query: 127 GAPGSVEGVAARCRGLPGGFRRVPGRRRQQEPGQRAEQREPQAAAHGGHRARARKRSHPG 186
GAPG+ ++ G PG PG + G + E P A G + PG
Sbjct: 533 GAPGAPGFPGSK--GEPGDILTFPGMK-----GDKGELGSPGAPGLPGLPGTPGQDGLPG 585
Query: 187 EGASAERVLPKPGAGPG-VRFRAERVMPGEPSRPGL 221
LP P PG + F+ ER PG P PGL
Sbjct: 586 --------LPGPKGEPGGITFKGERGPPGNPGLPGL 613
Score = 29.6 bits (65), Expect = 2.2
Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 3/95 (3%)
Query: 127 GAPGSVEGVAARCRGLPGGFRRVPGRRRQQ-EPGQRAEQREPQAAAHGGHRARARKRSHP 185
G PG +G +G PG R PG+ + +PG +P G ++
Sbjct: 279 GPPGGEKGEKGE-QGEPGK-RGKPGKDGENGQPGIPGLPGDPGYPGEPGRDGEKGQKGDT 336
Query: 186 GEGASAERVLPKPGAGPGVRFRAERVMPGEPSRPG 220
G V+P+PG G + + +PG P G
Sbjct: 337 GPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKG 371
Score = 29.3 bits (64), Expect = 2.8
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 7/82 (8%)
Query: 141 GLPGGFRRVPGRRRQQEPGQRAEQREPQAAAHGGHRARARKRSHPGEGASAERVLPKPGA 200
GLPG V G +PG E+ +P G + + PG G P P
Sbjct: 1143 GLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGN------PGPPG 1196
Query: 201 GPGVR-FRAERVMPGEPSRPGL 221
PG+ + + +PG P PGL
Sbjct: 1197 LPGLSGQKGDGGLPGIPGNPGL 1218
Score = 27.7 bits (60), Expect = 8.3
Identities = 28/91 (30%), Positives = 36/91 (39%), Gaps = 16/91 (17%)
Query: 141 GLPG-----GFRRVPGRRRQQEPGQRAEQREPQAAAHGGHRARARKRSHPGE-GASAERV 194
GLPG GF PG Q PG A G + + PG G + +
Sbjct: 1217 GLPGPKGEPGFHGFPGV--QGPPGPPGSP----GPALEGPKGNPGPQGPPGRPGPTGFQG 1270
Query: 195 LPKPGAGPGVR----FRAERVMPGEPSRPGL 221
LP P PG+ + E+ PG+P PGL
Sbjct: 1271 LPGPEGPPGLPGNGGIKGEKGNPGQPGLPGL 1301
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 33.9 bits (76), Expect = 0.12
Identities = 30/96 (31%), Positives = 38/96 (39%), Gaps = 16/96 (16%)
Query: 127 GAPGSVEGVAARCRGLPGGFRRVPGRRRQQEPGQRAEQREPQAAAHGGHRARARKRSHPG 186
GAPG+ ++ G PG PG + G + E P A G + PG
Sbjct: 533 GAPGAPGFPGSK--GEPGDILTFPGMK-----GDKGELGSPGAPGLPGLPGTPGQDGLPG 585
Query: 187 EGASAERVLPKPGAGPG-VRFRAERVMPGEPSRPGL 221
LP P PG + F+ ER PG P PGL
Sbjct: 586 --------LPGPKGEPGGITFKGERGPPGNPGLPGL 613
Score = 29.6 bits (65), Expect = 2.2
Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 3/95 (3%)
Query: 127 GAPGSVEGVAARCRGLPGGFRRVPGRRRQQ-EPGQRAEQREPQAAAHGGHRARARKRSHP 185
G PG +G +G PG R PG+ + +PG +P G ++
Sbjct: 279 GPPGGEKGEKGE-QGEPGK-RGKPGKDGENGQPGIPGLPGDPGYPGEPGRDGEKGQKGDT 336
Query: 186 GEGASAERVLPKPGAGPGVRFRAERVMPGEPSRPG 220
G V+P+PG G + + +PG P G
Sbjct: 337 GPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKG 371
Score = 29.3 bits (64), Expect = 2.8
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 7/82 (8%)
Query: 141 GLPGGFRRVPGRRRQQEPGQRAEQREPQAAAHGGHRARARKRSHPGEGASAERVLPKPGA 200
GLPG V G +PG E+ +P G + + PG G P P
Sbjct: 1143 GLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGN------PGPPG 1196
Query: 201 GPGVR-FRAERVMPGEPSRPGL 221
PG+ + + +PG P PGL
Sbjct: 1197 LPGLSGQKGDGGLPGIPGNPGL 1218
Score = 27.7 bits (60), Expect = 8.3
Identities = 29/91 (31%), Positives = 36/91 (39%), Gaps = 22/91 (24%)
Query: 141 GLPG-----GFRRVPGRRRQQEPGQRAEQREPQAAAHGGHRARARKRSHPG-EGASAERV 194
GLPG GF PG Q PG P A G + +PG +G
Sbjct: 1217 GLPGPKGEPGFHGFPGV--QGPPGPPGS---PGPALEG-------PKGNPGPQGPPGRPG 1264
Query: 195 LPKPGAGPGVR----FRAERVMPGEPSRPGL 221
LP P PG+ + E+ PG+P PGL
Sbjct: 1265 LPGPEGPPGLPGNGGIKGEKGNPGQPGLPGL 1295
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 33.9 bits (76), Expect = 0.12
Identities = 30/96 (31%), Positives = 38/96 (39%), Gaps = 16/96 (16%)
Query: 127 GAPGSVEGVAARCRGLPGGFRRVPGRRRQQEPGQRAEQREPQAAAHGGHRARARKRSHPG 186
GAPG+ ++ G PG PG + G + E P A G + PG
Sbjct: 533 GAPGAPGFPGSK--GEPGDILTFPGMK-----GDKGELGSPGAPGLPGLPGTPGQDGLPG 585
Query: 187 EGASAERVLPKPGAGPG-VRFRAERVMPGEPSRPGL 221
LP P PG + F+ ER PG P PGL
Sbjct: 586 --------LPGPKGEPGGITFKGERGPPGNPGLPGL 613
Score = 29.6 bits (65), Expect = 2.2
Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 3/95 (3%)
Query: 127 GAPGSVEGVAARCRGLPGGFRRVPGRRRQQ-EPGQRAEQREPQAAAHGGHRARARKRSHP 185
G PG +G +G PG R PG+ + +PG +P G ++
Sbjct: 279 GPPGGEKGEKGE-QGEPGK-RGKPGKDGENGQPGIPGLPGDPGYPGEPGRDGEKGQKGDT 336
Query: 186 GEGASAERVLPKPGAGPGVRFRAERVMPGEPSRPG 220
G V+P+PG G + + +PG P G
Sbjct: 337 GPPGPPGLVIPRPGTGITIGEKGNIGLPGLPGEKG 371
Score = 29.3 bits (64), Expect = 2.8
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 7/82 (8%)
Query: 141 GLPGGFRRVPGRRRQQEPGQRAEQREPQAAAHGGHRARARKRSHPGEGASAERVLPKPGA 200
GLPG V G +PG E+ +P G + + PG G P P
Sbjct: 1143 GLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGN------PGPPG 1196
Query: 201 GPGVR-FRAERVMPGEPSRPGL 221
PG+ + + +PG P PGL
Sbjct: 1197 LPGLSGQKGDGGLPGIPGNPGL 1218
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 33.9 bits (76), Expect = 0.12
Identities = 33/100 (33%), Positives = 42/100 (42%), Gaps = 9/100 (9%)
Query: 128 APGSVEGVAARCRGLPGGFRRVPGRRRQQE-----PGQRAEQREPQAAAHGGHRA--RAR 180
AP S +G R G G RR RRR+ P +R +R A G R+ RAR
Sbjct: 369 APSS-QGRGGRAAGGAGRRRRRRRRRRRSRSSASAPRRRGRRRPRPAPPRGSSRSLSRAR 427
Query: 181 KRSHPGEGASAERVLPKPGAGPGVRFRAERVMPGEP-SRP 219
S G G A P+PG+ G +R P +RP
Sbjct: 428 SSSDSGSGRGAPGPGPEPGSERGHGGHGKRAKERPPRARP 467
>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
Length = 680
Score = 33.5 bits (75), Expect = 0.15
Identities = 29/91 (31%), Positives = 36/91 (39%), Gaps = 11/91 (12%)
Query: 141 GLPGGFR-RVPGRRRQQ----EPGQRAEQREPQAAAHGGHRARARKRSHPGEGASAERVL 195
G+PG VPG+ QQ PG R E A G + + + G ER L
Sbjct: 145 GIPGPAGISVPGKPGQQGPTGAPGPRGFPGEKGAPGVPGMNGQKGEMGYGAPGRPGERGL 204
Query: 196 PKP------GAGPGVRFRAERVMPGEPSRPG 220
P P PGV R E +PG+P G
Sbjct: 205 PGPQGPTGPSGPPGVGKRGENGVPGQPGIKG 235
Score = 28.9 bits (63), Expect = 3.7
Identities = 27/98 (27%), Positives = 32/98 (32%), Gaps = 6/98 (6%)
Query: 127 GAPGSVEGVAARCRGLPGGFRRVPGRRRQQEPGQRAEQREPQAAAHGGHRARARKRSHPG 186
G PG V A+ G+PG R PG R P G + PG
Sbjct: 419 GLPGPVGPAGAK--GMPGHNGEAGPRGAPGIPGTRGPIGPPGIPGFPGSKGDPGSPGPPG 476
Query: 187 EGASAERVLPKPGAGPGV----RFRAERVMPGEPSRPG 220
A + L P PG E +PG P PG
Sbjct: 477 PAGIATKGLNGPTGPPGPPGPRGHSGEPGLPGPPGPPG 514
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 33.5 bits (75), Expect = 0.15
Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 9/72 (12%)
Query: 158 PGQRAEQREPQAAAHGGHRARARKRSHPG---------EGASAERVLPKPGAGPGVRFRA 208
PG+ Q EP A + GH+ PG E AE PG V R
Sbjct: 1296 PGRMGAQGEPGLAGYDGHKGIVGPLGPPGPKGEKGEQGEDGKAEGPPGPPGDRGPVGDRG 1355
Query: 209 ERVMPGEPSRPG 220
+R PG+P PG
Sbjct: 1356 DRGEPGDPGYPG 1367
Score = 31.6 bits (70), Expect = 0.57
Identities = 33/96 (34%), Positives = 40/96 (41%), Gaps = 16/96 (16%)
Query: 127 GAPGSVEGVAARCRGLPG--GFRRVPGRRRQQEPGQRAEQREPQAAAHGGHRARARKRSH 184
G PG GV R +GL G G +PGR GQ +Q E G A KR +
Sbjct: 1424 GLPGP-RGVVGR-QGLEGIAGPDGLPGR-----DGQAGQQGEQGDDGDPGPMGPAGKRGN 1476
Query: 185 PGEGASAERVLPKPGAGPGVRFRAERVMPGEPSRPG 220
PG V PGA F+ E +PG+ PG
Sbjct: 1477 PG-------VAGLPGAQGPPGFKGESGLPGQLGPPG 1505
Score = 30.8 bits (68), Expect = 0.98
Identities = 28/95 (29%), Positives = 38/95 (40%), Gaps = 8/95 (8%)
Query: 128 APGSVEGVAARCRGLPGGFRRVPGRRRQQEPGQRAEQREPQAAAHGGHRARARKRSHPG- 186
+PG A GLPG PG PG++ + P A H G + + PG
Sbjct: 681 SPGKAHDGAKGDMGLPG-LSGNPG-----PPGRKGHKGYPGPAGHPGEQGQPGPEGSPGA 734
Query: 187 EGASAERVLPKPGAGPGVR-FRAERVMPGEPSRPG 220
+G + LP P PG + R +PG PG
Sbjct: 735 KGYPGRQGLPGPVGDPGPKGSRGYIGLPGLFGLPG 769
>gi|154759257 DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 [Homo
sapiens]
Length = 666
Score = 33.5 bits (75), Expect = 0.15
Identities = 29/94 (30%), Positives = 37/94 (39%), Gaps = 3/94 (3%)
Query: 127 GAPGSVEGVAARCRGLPGGFR-RVPGRRRQQEPGQRAEQREPQAAAHGGHRARARKRSHP 185
G G+ G R R L + R R++Q+EP Q + A R R R+R +
Sbjct: 19 GPEGAEAGAHGRARALLERLQSRARERQQQREPAQTEAAASTEPATRRRRRPRRRRRVND 78
Query: 186 GEGASAERVLPKPGAGPGVRFRAE--RVMPGEPS 217
E S E K G AE PGEPS
Sbjct: 79 AEPGSPEAPQGKRRKADGEDAGAESNEEAPGEPS 112
>gi|239748756 PREDICTED: hypothetical protein XP_002346788 [Homo
sapiens]
Length = 647
Score = 33.1 bits (74), Expect = 0.20
Identities = 28/69 (40%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 127 GAPGSVEGVAARCRGLPGG-FRRVPGRRRQQEPGQRAEQREPQAAAHGGHRARARKRS-H 184
GA + EG AA G P R GRR+ EPG RA + P A+ G H A R
Sbjct: 408 GAGPAREGPAAWPGGAPTPPHARPTGRRQDPEPGPRAPRGGP--ASSGWHAGSAAGRGWD 465
Query: 185 PGEGASAER 193
PG G+ A R
Sbjct: 466 PGGGSRARR 474
>gi|239747641 PREDICTED: hypothetical protein XP_002347916 [Homo
sapiens]
Length = 193
Score = 33.1 bits (74), Expect = 0.20
Identities = 29/81 (35%), Positives = 32/81 (39%), Gaps = 17/81 (20%)
Query: 153 RRQQEPGQRAEQREPQAAAHGGHRARARKRSHPGEGASAER------------VLPKPGA 200
R+QQ QR R P AA G H R R PG A E +LP PG
Sbjct: 59 RQQQRQQQRPRPRSPDPAARGQHVPELRSRK-PGPAARTEEGGDVTGRPWQPPLLPPPGV 117
Query: 201 -GPGVR---FRAERVMPGEPS 217
PG R R ER P P+
Sbjct: 118 PTPGNRGGERRGERRAPPRPA 138
>gi|239742799 PREDICTED: hypothetical protein XP_002342652 [Homo
sapiens]
Length = 647
Score = 33.1 bits (74), Expect = 0.20
Identities = 28/69 (40%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 127 GAPGSVEGVAARCRGLPGG-FRRVPGRRRQQEPGQRAEQREPQAAAHGGHRARARKRS-H 184
GA + EG AA G P R GRR+ EPG RA + P A+ G H A R
Sbjct: 408 GAGPAREGPAAWPGGAPTPPHARPTGRRQDPEPGPRAPRGGP--ASSGWHAGSAAGRGWD 465
Query: 185 PGEGASAER 193
PG G+ A R
Sbjct: 466 PGGGSRARR 474
>gi|29648305 zinc finger, CCHC domain containing 3 [Homo sapiens]
Length = 403
Score = 33.1 bits (74), Expect = 0.20
Identities = 29/86 (33%), Positives = 38/86 (44%), Gaps = 12/86 (13%)
Query: 130 GSVEGVAARCRG-LPGGFRRVPGRRRQQEPGQRAEQREPQAAAHGGHRARARKR------ 182
G G+AA G P R P RR+ G+ + R+ + AA G R +A
Sbjct: 76 GGPAGLAAPDLGDFPPAGRGDPKGRRRDPAGEAVDPRKKKGAAEAGRRKKAEAAAAAMAT 135
Query: 183 -SHPGEGA-SAERVL---PKPGAGPG 203
+ PGE +AER L P AGPG
Sbjct: 136 PARPGEAEDAAERPLQDEPAAAAGPG 161
>gi|239754253 PREDICTED: hypothetical protein XP_002345936 [Homo
sapiens]
Length = 145
Score = 32.7 bits (73), Expect = 0.26
Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Query: 143 PGGFRRVPGRRRQQEP-GQRAEQREPQAAAHGGHRARARKRSHPGEGASAERVLPKPGAG 201
P GF+R PG R++ P E P AAA R R+ PG S R P+ G
Sbjct: 62 PPGFQRGPGARKRSAPSAMLLEPPHPSAAA--APLQRRRRTPPPGTVGSKRRCPPRLRLG 119
Query: 202 PGVRFRAERVMPGEPSRP 219
G + G P P
Sbjct: 120 LGFPYPGPASSLGSPLSP 137
>gi|239748791 PREDICTED: hypothetical protein XP_002346804 [Homo
sapiens]
Length = 145
Score = 32.7 bits (73), Expect = 0.26
Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Query: 143 PGGFRRVPGRRRQQEP-GQRAEQREPQAAAHGGHRARARKRSHPGEGASAERVLPKPGAG 201
P GF+R PG R++ P E P AAA R R+ PG S R P+ G
Sbjct: 62 PPGFQRGPGARKRSAPSAMLLEPPHPSAAA--APLQRRRRTPPPGTVGSKRRCPPRLRLG 119
Query: 202 PGVRFRAERVMPGEPSRP 219
G + G P P
Sbjct: 120 LGFPYPGPASSLGSPLSP 137
>gi|239742828 PREDICTED: hypothetical protein XP_002342673 [Homo
sapiens]
Length = 145
Score = 32.7 bits (73), Expect = 0.26
Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
Query: 143 PGGFRRVPGRRRQQEP-GQRAEQREPQAAAHGGHRARARKRSHPGEGASAERVLPKPGAG 201
P GF+R PG R++ P E P AAA R R+ PG S R P+ G
Sbjct: 62 PPGFQRGPGARKRSAPSAMLLEPPHPSAAA--APLQRRRRTPPPGTVGSKRRCPPRLRLG 119
Query: 202 PGVRFRAERVMPGEPSRP 219
G + G P P
Sbjct: 120 LGFPYPGPASSLGSPLSP 137
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.135 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,728,285
Number of Sequences: 37866
Number of extensions: 565820
Number of successful extensions: 3131
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 235
Number of HSP's that attempted gapping in prelim test: 2881
Number of HSP's gapped (non-prelim): 504
length of query: 224
length of database: 18,247,518
effective HSP length: 98
effective length of query: 126
effective length of database: 14,536,650
effective search space: 1831617900
effective search space used: 1831617900
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.