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Search of human proteins with 239753539
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239753539 PREDICTED: hypothetical protein [Homo sapiens]
(159 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753539 PREDICTED: hypothetical protein [Homo sapiens] 338 1e-93
gi|239748123 PREDICTED: hypothetical protein XP_002346557 [Homo ... 338 1e-93
gi|239742022 PREDICTED: hypothetical protein XP_002342393 [Homo ... 338 1e-93
gi|6912492 mitogen-activated protein kinase 8 interacting protei... 34 0.046
gi|7706537 mitogen-activated protein kinase 8 interacting protei... 34 0.046
gi|163965366 nascent polypeptide-associated complex alpha subuni... 33 0.10
gi|169161400 PREDICTED: hypothetical protein [Homo sapiens] 33 0.13
gi|239741286 PREDICTED: hypothetical protein [Homo sapiens] 33 0.13
gi|238859651 pleckstrin homology domain containing family A memb... 32 0.18
gi|239741283 PREDICTED: hypothetical protein XP_002344484 [Homo ... 32 0.30
gi|58743323 XK, Kell blood group complex subunit-related family,... 32 0.30
gi|13376335 hypothetical protein LOC79946 [Homo sapiens] 32 0.30
gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens] 31 0.39
gi|5454140 tumor susceptibility gene 101 [Homo sapiens] 31 0.51
gi|116268127 kinase non-catalytic C-lobe domain (KIND) containin... 31 0.51
gi|11321640 basic beta 1 syntrophin [Homo sapiens] 30 0.67
gi|169205117 PREDICTED: hypothetical protein [Homo sapiens] 30 0.87
gi|110832843 TBP-associated factor 4 [Homo sapiens] 30 0.87
gi|123701326 zinc finger protein 831 [Homo sapiens] 30 0.87
gi|157412259 notch1-induced protein isoform a [Homo sapiens] 30 1.1
gi|157671913 notch1-induced protein isoform b [Homo sapiens] 30 1.1
gi|15529996 son of sevenless homolog 1 [Homo sapiens] 30 1.1
gi|23397672 homeobox D4 [Homo sapiens] 30 1.1
gi|239754514 PREDICTED: hypothetical protein [Homo sapiens] 30 1.1
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] 30 1.1
gi|87298937 centrosomal protein 110kDa [Homo sapiens] 30 1.1
gi|119395760 diaphanous 1 isoform 2 [Homo sapiens] 29 1.9
gi|119395758 diaphanous 1 isoform 1 [Homo sapiens] 29 1.9
gi|239757559 PREDICTED: hypothetical protein [Homo sapiens] 29 1.9
gi|239752069 PREDICTED: hypothetical protein [Homo sapiens] 29 1.9
>gi|239753539 PREDICTED: hypothetical protein [Homo sapiens]
Length = 159
Score = 338 bits (867), Expect = 1e-93
Identities = 159/159 (100%), Positives = 159/159 (100%)
Query: 1 MRSTTAGGLCVIARLRWREKAWCEKCPRESLSRVSSAGRGPCTRTGTAPGPAFPQALHPQ 60
MRSTTAGGLCVIARLRWREKAWCEKCPRESLSRVSSAGRGPCTRTGTAPGPAFPQALHPQ
Sbjct: 1 MRSTTAGGLCVIARLRWREKAWCEKCPRESLSRVSSAGRGPCTRTGTAPGPAFPQALHPQ 60
Query: 61 RPGGICEQPSGTPTPRLFGFTDLPLPQGSSHSGSFLPQGPLHWLFRDLSRSSLLICTYET 120
RPGGICEQPSGTPTPRLFGFTDLPLPQGSSHSGSFLPQGPLHWLFRDLSRSSLLICTYET
Sbjct: 61 RPGGICEQPSGTPTPRLFGFTDLPLPQGSSHSGSFLPQGPLHWLFRDLSRSSLLICTYET 120
Query: 121 RSDSLLQRTSESSCQILTILNNCSHPYTFCIALTTTRRF 159
RSDSLLQRTSESSCQILTILNNCSHPYTFCIALTTTRRF
Sbjct: 121 RSDSLLQRTSESSCQILTILNNCSHPYTFCIALTTTRRF 159
>gi|239748123 PREDICTED: hypothetical protein XP_002346557 [Homo
sapiens]
Length = 159
Score = 338 bits (867), Expect = 1e-93
Identities = 159/159 (100%), Positives = 159/159 (100%)
Query: 1 MRSTTAGGLCVIARLRWREKAWCEKCPRESLSRVSSAGRGPCTRTGTAPGPAFPQALHPQ 60
MRSTTAGGLCVIARLRWREKAWCEKCPRESLSRVSSAGRGPCTRTGTAPGPAFPQALHPQ
Sbjct: 1 MRSTTAGGLCVIARLRWREKAWCEKCPRESLSRVSSAGRGPCTRTGTAPGPAFPQALHPQ 60
Query: 61 RPGGICEQPSGTPTPRLFGFTDLPLPQGSSHSGSFLPQGPLHWLFRDLSRSSLLICTYET 120
RPGGICEQPSGTPTPRLFGFTDLPLPQGSSHSGSFLPQGPLHWLFRDLSRSSLLICTYET
Sbjct: 61 RPGGICEQPSGTPTPRLFGFTDLPLPQGSSHSGSFLPQGPLHWLFRDLSRSSLLICTYET 120
Query: 121 RSDSLLQRTSESSCQILTILNNCSHPYTFCIALTTTRRF 159
RSDSLLQRTSESSCQILTILNNCSHPYTFCIALTTTRRF
Sbjct: 121 RSDSLLQRTSESSCQILTILNNCSHPYTFCIALTTTRRF 159
>gi|239742022 PREDICTED: hypothetical protein XP_002342393 [Homo
sapiens]
Length = 159
Score = 338 bits (867), Expect = 1e-93
Identities = 159/159 (100%), Positives = 159/159 (100%)
Query: 1 MRSTTAGGLCVIARLRWREKAWCEKCPRESLSRVSSAGRGPCTRTGTAPGPAFPQALHPQ 60
MRSTTAGGLCVIARLRWREKAWCEKCPRESLSRVSSAGRGPCTRTGTAPGPAFPQALHPQ
Sbjct: 1 MRSTTAGGLCVIARLRWREKAWCEKCPRESLSRVSSAGRGPCTRTGTAPGPAFPQALHPQ 60
Query: 61 RPGGICEQPSGTPTPRLFGFTDLPLPQGSSHSGSFLPQGPLHWLFRDLSRSSLLICTYET 120
RPGGICEQPSGTPTPRLFGFTDLPLPQGSSHSGSFLPQGPLHWLFRDLSRSSLLICTYET
Sbjct: 61 RPGGICEQPSGTPTPRLFGFTDLPLPQGSSHSGSFLPQGPLHWLFRDLSRSSLLICTYET 120
Query: 121 RSDSLLQRTSESSCQILTILNNCSHPYTFCIALTTTRRF 159
RSDSLLQRTSESSCQILTILNNCSHPYTFCIALTTTRRF
Sbjct: 121 RSDSLLQRTSESSCQILTILNNCSHPYTFCIALTTTRRF 159
>gi|6912492 mitogen-activated protein kinase 8 interacting protein 2
isoform 1 [Homo sapiens]
Length = 824
Score = 34.3 bits (77), Expect = 0.046
Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 11/71 (15%)
Query: 7 GGLCVIARLRWREKAWCEKCPRESLSRVSSAGRGPCTRTGTAPGPAFPQALHPQRPGGIC 66
GG ++ W+E A C P E+L + GP T T PG A P RPG C
Sbjct: 156 GGFDLVRPASWQETALCSPAP-EALRELP----GPLPATDTGPG----GAQSPVRPGCDC 206
Query: 67 E--QPSGTPTP 75
E +P+ P P
Sbjct: 207 EGNRPAEPPAP 217
>gi|7706537 mitogen-activated protein kinase 8 interacting protein 2
isoform 2 [Homo sapiens]
Length = 797
Score = 34.3 bits (77), Expect = 0.046
Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 11/71 (15%)
Query: 7 GGLCVIARLRWREKAWCEKCPRESLSRVSSAGRGPCTRTGTAPGPAFPQALHPQRPGGIC 66
GG ++ W+E A C P E+L + GP T T PG A P RPG C
Sbjct: 129 GGFDLVRPASWQETALCSPAP-EALRELP----GPLPATDTGPG----GAQSPVRPGCDC 179
Query: 67 E--QPSGTPTP 75
E +P+ P P
Sbjct: 180 EGNRPAEPPAP 190
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 33.1 bits (74), Expect = 0.10
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 27 PRESLSRVSSAGRGPCTRTGTAPGPA---FPQALHPQRPGGICEQPSGTPTPRLFGFTDL 83
P SLS S T + T P P P A+ P P G+ P TPTP + +L
Sbjct: 837 PENSLSFQGSKDSPATTHSPTPPSPKGAPTPSAVTPLSPKGVTLPPKETPTPSV---VNL 893
Query: 84 PLPQ 87
P P+
Sbjct: 894 PFPK 897
Score = 32.3 bits (72), Expect = 0.18
Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 49 PGPAFPQALHP---QRPGGICEQPSGTPTPRLFGFTDLPLPQGSSHSGSFLPQG 99
PGP P P Q P Q S P+P T L +P S SG+ LP G
Sbjct: 41 PGPTLPPPCSPAPQQCPLSAANQASPFPSPSTIASTPLEVPFPQSSSGTALPLG 94
>gi|169161400 PREDICTED: hypothetical protein [Homo sapiens]
Length = 268
Score = 32.7 bits (73), Expect = 0.13
Identities = 32/107 (29%), Positives = 40/107 (37%), Gaps = 21/107 (19%)
Query: 9 LCVIARLRW--REKAWCEKCPRESLSRVSSAGRGPCTRTGTAPGPAFPQALHPQRPGG-- 64
LC RW R + W E+CP L S R +R + P P P ++PGG
Sbjct: 77 LCQSEGTRWSRRGRRWAERCPPGVLGAGRSL-RAQRSRLHSRPPPLSPL----RKPGGSN 131
Query: 65 ------------ICEQPSGTPTPRLFGFTDLPLPQGSSHSGSFLPQG 99
C Q SGT + L L S H+GS L G
Sbjct: 132 QPRSAAAAGTQEACLQASGTTRGWKYHALPLRLDPRSGHAGSALKAG 178
>gi|239741286 PREDICTED: hypothetical protein [Homo sapiens]
Length = 268
Score = 32.7 bits (73), Expect = 0.13
Identities = 32/107 (29%), Positives = 40/107 (37%), Gaps = 21/107 (19%)
Query: 9 LCVIARLRW--REKAWCEKCPRESLSRVSSAGRGPCTRTGTAPGPAFPQALHPQRPGG-- 64
LC RW R + W E+CP L S R +R + P P P ++PGG
Sbjct: 77 LCQSEGTRWSRRGRRWAERCPPGVLGAGRSL-RAQRSRLHSRPPPLSPL----RKPGGSN 131
Query: 65 ------------ICEQPSGTPTPRLFGFTDLPLPQGSSHSGSFLPQG 99
C Q SGT + L L S H+GS L G
Sbjct: 132 QPRSAAAAGTHEACLQASGTTRGWKYHALPLRLDPRSGHAGSALKAG 178
>gi|238859651 pleckstrin homology domain containing family A member
4 isoform 1 [Homo sapiens]
Length = 779
Score = 32.3 bits (72), Expect = 0.18
Identities = 34/105 (32%), Positives = 45/105 (42%), Gaps = 10/105 (9%)
Query: 28 RESLSRVSSAGRGPCTRTGTAPGPAFPQALHPQRPGGICEQPSGTPTPRLFGFTDL-PLP 86
R++LSR + RGP + G P PQ Q P + SG+PT + L P P
Sbjct: 288 RQTLSRPPTPRRGPPSEAGGGKPPRSPQH-WSQEPR--TQAHSGSPT-----YLQLPPRP 339
Query: 87 QGSSHSGSFLPQGPLHWLFRDLSRSSLLICTYETRSDSLLQRTSE 131
G+ S LP PL F + L+ T D LL+R E
Sbjct: 340 PGTRASMVLLPGPPLESTFHQSLETDTLL-TKLCGQDRLLRRLQE 383
>gi|239741283 PREDICTED: hypothetical protein XP_002344484 [Homo
sapiens]
Length = 268
Score = 31.6 bits (70), Expect = 0.30
Identities = 31/102 (30%), Positives = 38/102 (37%), Gaps = 21/102 (20%)
Query: 9 LCVIARLRW--REKAWCEKCPRESLSRVSSAGRGPCTRTGTAPGPAFPQALHPQRPGG-- 64
LC RW R + W E+CP L S R +R + P P P ++PGG
Sbjct: 77 LCQSEGTRWSRRGRRWAERCPPGVLGAGRSL-RAQGSRLHSRPPPLSPL----RKPGGSN 131
Query: 65 ------------ICEQPSGTPTPRLFGFTDLPLPQGSSHSGS 94
C Q SGT + L L S HSGS
Sbjct: 132 QPRSAAAAGTQEACLQASGTTRGWKYHALPLRLDPRSGHSGS 173
>gi|58743323 XK, Kell blood group complex subunit-related family,
member 7 [Homo sapiens]
Length = 579
Score = 31.6 bits (70), Expect = 0.30
Identities = 30/118 (25%), Positives = 48/118 (40%), Gaps = 14/118 (11%)
Query: 33 RVSSAGRGPCTRTGTAPGPAFPQALHPQRPGGICEQPSGTPTPRLF----GFTDLPLPQG 88
R +S GP T+P + P+ +R G + +GTPTP +F G P+ +
Sbjct: 456 RKASEPCGPPADAITSPPRSLPRTTGAERDGASAGERAGTPTPPVFQVRPGLPPTPVART 515
Query: 89 SSHSGSFL---------PQGPLHWLFRDLSRSSLLICTYETRSDSLLQRTSESSCQIL 137
G + P H++ R L R ++L Y + + LQ S + Q L
Sbjct: 516 LRTEGPVIRIDLPRKKYPAWDAHFIDRRL-RKTILALEYSSPATPRLQYRSVGTSQEL 572
>gi|13376335 hypothetical protein LOC79946 [Homo sapiens]
Length = 257
Score = 31.6 bits (70), Expect = 0.30
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 10/57 (17%)
Query: 26 CPRESLSRVSSAGRGPCTRTGTAP------GPAFPQALHPQRPGGICEQPSGTPTPR 76
C +S S+AG G C R P A P+ P+RPGG P+ PTPR
Sbjct: 77 CYPQSRPTASAAGPGACMRASGRPHGNTTASTAPPRHPRPRRPGG----PALRPTPR 129
>gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens]
Length = 1003
Score = 31.2 bits (69), Expect = 0.39
Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 9/68 (13%)
Query: 37 AGRGPCTRTGTAPGPAFPQALHPQRPG-----GICEQPSGTPTPRLFGFTDLPLPQGSSH 91
+ R PC T P P +L P+ P P G PRL P+P G S
Sbjct: 144 SARPPCRVPPTTPLNGGPGSLPPEPPSVSQAFPTLAGPGGLFPPRLAD----PVPSGGSS 199
Query: 92 SGSFLPQG 99
S FLP+G
Sbjct: 200 SPRFLPRG 207
>gi|5454140 tumor susceptibility gene 101 [Homo sapiens]
Length = 390
Score = 30.8 bits (68), Expect = 0.51
Identities = 24/69 (34%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
Query: 32 SRVSSAGRGPCTRTGTAPGPAFPQALHPQRPGGICEQPSGTPTPRLFGFTDLPLPQGSSH 91
SR SA P TG P ++ P PGGI PSG P P G+ P P G +
Sbjct: 143 SRPISASYPPYQATGP-PNTSYM----PGMPGGISPYPSGYP-PNPSGYPGCPYPPGGPY 196
Query: 92 SGSFLPQGP 100
+ Q P
Sbjct: 197 PATTSSQYP 205
>gi|116268127 kinase non-catalytic C-lobe domain (KIND) containing 1
isoform a [Homo sapiens]
Length = 1749
Score = 30.8 bits (68), Expect = 0.51
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 20 KAWCEKCPRESLSRVSSAGRGPCTRTGTAPGPAFPQALHPQRPGGICEQPS 70
+ W E+ P L RV AGR G P P+ HP + G E P+
Sbjct: 362 RLWPEQEPEHQLGRVPCAGRSTDRGPGVPGSPGQPETSHPSQ--GPAEAPA 410
>gi|11321640 basic beta 1 syntrophin [Homo sapiens]
Length = 538
Score = 30.4 bits (67), Expect = 0.67
Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
Query: 2 RSTTAGGLCVIARLRWREKAWCEKCPRESLSRVSSAGRGPCTRTGTAPGPAFPQALHPQR 61
R+ +G L V+ R RW + ++L S G GTA +F +
Sbjct: 19 RAQRSGLLEVLVRDRWHKVL--VNLSEDALVLSSEEGAAAYNGIGTATNGSFCRGAGAGH 76
Query: 62 PGGICEQPSGTPTPRLFGFTDLP 84
PG QP +P FTDLP
Sbjct: 77 PGAGGAQPPDSPAGVRTAFTDLP 99
>gi|169205117 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 30.0 bits (66), Expect = 0.87
Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 12/68 (17%)
Query: 34 VSSAGRGPCTRTGTAPGPAFPQALHPQRPGGICEQPSGTPTPRLFGFTDLPLPQGSSHSG 93
V + G+ C+ G A GP G CE G PR G + PLP + +G
Sbjct: 189 VRARGKPGCSPRGGAAGP------------GACELGEGRRLPRAPGPSPPPLPASADAAG 236
Query: 94 SFLPQGPL 101
P G L
Sbjct: 237 RLPPGGRL 244
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 30.0 bits (66), Expect = 0.87
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 32 SRVSSAGRGPCTRTGTAPGPA-FPQALHPQRPGGICEQPSGTPTPR 76
S +AG GP APG A P RPGG Q G P+PR
Sbjct: 66 SPAGAAGAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPR 111
>gi|123701326 zinc finger protein 831 [Homo sapiens]
Length = 1677
Score = 30.0 bits (66), Expect = 0.87
Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Query: 2 RSTTAGGLCVIARLRWR--EKAWCEKCPRESLSRVSSAGRGPCTRTGTAPGPAFP-QALH 58
+S TAG C + R + EK W K P L + S G +R+ +A P P LH
Sbjct: 305 KSPTAGKPCALQRQQATAAEKPWDAKAPEGRLRKCESTDSGYLSRSDSAEQPHAPCSPLH 364
Query: 59 PQRPGGICEQPSGTPTP 75
+ G P P
Sbjct: 365 SLSEHSAESEGEGGPGP 381
>gi|157412259 notch1-induced protein isoform a [Homo sapiens]
Length = 451
Score = 29.6 bits (65), Expect = 1.1
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 46 GTAPGPAFPQALHPQRPGGICEQPSGTPTPRLF 78
GT PG PQA+ P G C + G PTP+ F
Sbjct: 37 GTEPG-RHPQAVAAVLPAGGCGERMGVPTPKQF 68
>gi|157671913 notch1-induced protein isoform b [Homo sapiens]
Length = 401
Score = 29.6 bits (65), Expect = 1.1
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 46 GTAPGPAFPQALHPQRPGGICEQPSGTPTPRLF 78
GT PG PQA+ P G C + G PTP+ F
Sbjct: 37 GTEPG-RHPQAVAAVLPAGGCGERMGVPTPKQF 68
>gi|15529996 son of sevenless homolog 1 [Homo sapiens]
Length = 1333
Score = 29.6 bits (65), Expect = 1.1
Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 14/79 (17%)
Query: 27 PRESLSRVSSAGRGPCTRTGTAPGPAFPQALHPQRPGGICEQPSGTPTPRLFGFTDL--- 83
PR+ S+ S RT + P P L P+ P TP +F + L
Sbjct: 1184 PRQPTSKAYSPRYSISDRTSISDPPESPPLLPPREP---------VRTPDVFSSSPLHLQ 1234
Query: 84 --PLPQGSSHSGSFLPQGP 100
PL + S H +F P P
Sbjct: 1235 PPPLGKKSDHGNAFFPNSP 1253
>gi|23397672 homeobox D4 [Homo sapiens]
Length = 255
Score = 29.6 bits (65), Expect = 1.1
Identities = 22/65 (33%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Query: 38 GRGPCTRTGTAPGPAFPQALHPQRPGGICEQ--PSGTPTPRLFGFTDLPLPQGSSHSGSF 95
G P +G PG A P H Q PGG G P P PLP ++S S
Sbjct: 58 GEQPFGGSGPGPGSALPARGHGQEPGGPGGHYAAPGEPCPAPPAPPPAPLPGARAYSQSD 117
Query: 96 LPQGP 100
Q P
Sbjct: 118 PKQPP 122
>gi|239754514 PREDICTED: hypothetical protein [Homo sapiens]
Length = 260
Score = 29.6 bits (65), Expect = 1.1
Identities = 32/100 (32%), Positives = 39/100 (39%), Gaps = 20/100 (20%)
Query: 36 SAGRGPCTRTGTAPGPAFPQALHPQRPGGICEQPSGTPTPRLFGFTDLP--LP------- 86
S+ RG R AP P PQ L RP G P+ + PR + P LP
Sbjct: 26 SSSRGGSARRRAAPAPRCPQRLGLLRPPG----PTNSEFPRAWHPRPPPGHLPMWLSSMC 81
Query: 87 -QGSSHSGSFLPQGPLHWLFRDLSRSSLLICTYETRSDSL 125
S+ G + PQ P + R S IC TRS L
Sbjct: 82 SMRSARVGKWSPQPP------NRQRWSFAICPGWTRSPGL 115
>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
Length = 1489
Score = 29.6 bits (65), Expect = 1.1
Identities = 23/64 (35%), Positives = 26/64 (40%), Gaps = 10/64 (15%)
Query: 46 GTAPGPAFPQALHPQRPGGICEQPSGTPT--PRLFGFT--------DLPLPQGSSHSGSF 95
G+ P P FP P PG Q P+ P+L T P P SS SGSF
Sbjct: 575 GSPPEPLFPNDWDPLDPGVPAPQAPQAPSEVPQLVSETWASPLFPAPRPFPAQSSASGSF 634
Query: 96 LPQG 99
L G
Sbjct: 635 LLSG 638
>gi|87298937 centrosomal protein 110kDa [Homo sapiens]
Length = 2325
Score = 29.6 bits (65), Expect = 1.1
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 6/55 (10%)
Query: 48 APGPAFPQALHPQRPGGICEQPSGTPTPRLFGFTDLPLPQGSSHSGSFLPQGPLH 102
AP P P P PG + P P ++G P + S F+P G LH
Sbjct: 1264 APPPPLPNNSRPLTPGTVVYGPPPAGAPMVYG------PPPPNFSIPFIPMGVLH 1312
>gi|119395760 diaphanous 1 isoform 2 [Homo sapiens]
Length = 1263
Score = 28.9 bits (63), Expect = 1.9
Identities = 25/66 (37%), Positives = 28/66 (42%), Gaps = 13/66 (19%)
Query: 47 TAPGPAFPQALHPQRPGGIC-----EQPSGT---PTPRLFGFTDL----PLPQG-SSHSG 93
T P P P P PGG+C P GT P P L G + PLP+G S
Sbjct: 598 TPPPPPPPPPPPPPLPGGVCISSPPSLPGGTAISPPPPLSGDATIPPPPPLPEGVGIPSP 657
Query: 94 SFLPQG 99
S LP G
Sbjct: 658 SSLPGG 663
>gi|119395758 diaphanous 1 isoform 1 [Homo sapiens]
Length = 1272
Score = 28.9 bits (63), Expect = 1.9
Identities = 25/66 (37%), Positives = 28/66 (42%), Gaps = 13/66 (19%)
Query: 47 TAPGPAFPQALHPQRPGGIC-----EQPSGT---PTPRLFGFTDL----PLPQG-SSHSG 93
T P P P P PGG+C P GT P P L G + PLP+G S
Sbjct: 607 TPPPPPPPPPPPPPLPGGVCISSPPSLPGGTAISPPPPLSGDATIPPPPPLPEGVGIPSP 666
Query: 94 SFLPQG 99
S LP G
Sbjct: 667 SSLPGG 672
>gi|239757559 PREDICTED: hypothetical protein [Homo sapiens]
Length = 196
Score = 28.9 bits (63), Expect = 1.9
Identities = 25/94 (26%), Positives = 35/94 (37%), Gaps = 5/94 (5%)
Query: 12 IARLRWREKA----WCEKCPRESLSRVSSAGRGPCTRTGTAPGPAFPQAL-HPQRPGGIC 66
IA LR A W P + + ++ RGP R+ P+ L P+R GG
Sbjct: 72 IATLRGAPSALLCEWDPPRPCSARAATAAVSRGPRARSSACSRLPLPRKLTEPERGGGAQ 131
Query: 67 EQPSGTPTPRLFGFTDLPLPQGSSHSGSFLPQGP 100
Q S P G + PL + +GP
Sbjct: 132 SQASQLIRPTPLGTRERPLAAPPGNCARSRREGP 165
>gi|239752069 PREDICTED: hypothetical protein [Homo sapiens]
Length = 216
Score = 28.9 bits (63), Expect = 1.9
Identities = 25/94 (26%), Positives = 35/94 (37%), Gaps = 5/94 (5%)
Query: 12 IARLRWREKA----WCEKCPRESLSRVSSAGRGPCTRTGTAPGPAFPQAL-HPQRPGGIC 66
IA LR A W P + + ++ RGP R+ P+ L P+R GG
Sbjct: 72 IATLRGAPSALLCEWDPPRPCSARAATAAVSRGPRARSSACSRLPLPRKLTEPERGGGAQ 131
Query: 67 EQPSGTPTPRLFGFTDLPLPQGSSHSGSFLPQGP 100
Q S P G + PL + +GP
Sbjct: 132 SQASQLIRPTPLGTRERPLAAPPGNCARSRREGP 165
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.135 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,881,833
Number of Sequences: 37866
Number of extensions: 478238
Number of successful extensions: 1861
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 126
Number of HSP's that attempted gapping in prelim test: 1789
Number of HSP's gapped (non-prelim): 205
length of query: 159
length of database: 18,247,518
effective HSP length: 94
effective length of query: 65
effective length of database: 14,688,114
effective search space: 954727410
effective search space used: 954727410
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.