Guide to the Human Genome
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Name: LOC729920 Sequence: fasta or formatted (401aa) NCBI GI: 157671913
Description:

notch1-induced protein isoform b

Not currently referenced in the text

Other entries for this name:
alt prot {451aa} notch1-induced protein isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         29           2
 C cysteine            3.0         12           2
 D aspartate           3.7         15           2
 E glutamate           8.7         35           2
 F phenylalanine       2.2          9           1
 G glycine             6.2         25           2
 H histidine           3.0         12           1
 I isoleucine          6.7         27           3
 K lysine              6.5         26           1
 L leucine            11.2         45           2
 M methionine          2.0          8           1
 N asparagine          2.5         10           1
 P proline             4.7         19           2
 Q glutamine           5.5         22           2
 R arginine            4.2         17           1
 S serine              6.7         27           2
 T threonine           3.7         15           2
 V valine              9.0         36           4
 W tryptophan          0.5          2           1
 Y tyrosine            2.5         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   notch1-induced protein isoform b 
LOC729920             0.970   notch1-induced protein isoform a 
KIF4A                 0.017   kinesin family member 4 
EIF2B3                0.012   eukaryotic translation initiation factor 2B, subunit ...
KANK3                 0.009   ankyrin repeat domain 47 
C12orf51              0.009   chromosome 12 open reading frame 51 
SRP72                 0.009   signal recognition particle 72kDa 
LOC440017             0.008   PREDICTED: similar to double homeobox, 4 
LOC728022             0.008   PREDICTED: similar to double homeobox, 4 
LOC100289581          0.008   PREDICTED: hypothetical protein XP_002343082 
LOC440014             0.008   PREDICTED: similar to double homeobox, 4 
LOC399839             0.008   PREDICTED: similar to double homeobox, 4 
LOC440013             0.008   PREDICTED: similar to double homeobox, 4 
TROAP                 0.008   tastin isoform 1 
TPD52L2               0.008   tumor protein D52-like 2 isoform c 
TPD52L2               0.008   tumor protein D52-like 2 isoform e 
TPD52L2               0.008   tumor protein D52-like 2 isoform a 
AHDC1                 0.008   AT hook, DNA binding motif, containing 1 
KIF6                  0.008   kinesin family member 6 
LOC100128943          0.006   PREDICTED: similar to hCG2038853 
LOC100128943          0.006   PREDICTED: similar to hCG2038853 
LOC100128943          0.006   PREDICTED: similar to hCG2038853 
LOC653548             0.006   PREDICTED: double homeobox, 4-like 
FCN2                  0.006   ficolin 2 isoform b precursor 
FCN2                  0.006   ficolin 2 isoform a precursor 
DUX4                  0.006   double homeobox, 4 
LOC728410             0.006   double homeobox, 4-like 
LOC653543             0.006   double homeobox, 4-like 
LOC653545             0.006   double homeobox, 4-like 
LOC653544             0.006   double homeobox, 4-like 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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